Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC4.68□□□□□ -1.66
NUP88Q99567 AL136964.1-201ENST00000622038 2990 ntBASIC4.68□□□□□ -1.66
NUP88Q99567 MTCO1P9-201ENST00000505577 1534 ntBASIC4.68□□□□□ -1.66
NUP88Q99567 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
NUP88Q99567 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC4.68□□□□□ -1.66
NUP88Q99567 SNORA60-201ENST00000362396 134 ntBASIC4.68□□□□□ -1.66
NUP88Q99567 RNU6-213P-201ENST00000384051 104 ntBASIC4.68□□□□□ -1.66
NUP88Q99567 MRPL42P2-201ENST00000403169 426 ntBASIC4.68□□□□□ -1.66
NUP88Q99567 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
NUP88Q99567 EZH2P1-201ENST00000431167 291 ntBASIC4.68□□□□□ -1.66
NUP88Q99567 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC4.68□□□□□ -1.66
NUP88Q99567 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC4.68□□□□□ -1.66
NUP88Q99567 AC073614.1-201ENST00000438690 650 ntBASIC4.68□□□□□ -1.66
NUP88Q99567 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC4.68□□□□□ -1.66
NUP88Q99567 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC4.68□□□□□ -1.66
NUP88Q99567 AC234775.1-201ENST00000454247 670 ntBASIC4.68□□□□□ -1.66
NUP88Q99567 AC104308.1-201ENST00000454621 333 ntBASIC4.68□□□□□ -1.66
NUP88Q99567 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC4.68□□□□□ -1.66
NUP88Q99567 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC4.68□□□□□ -1.66
NUP88Q99567 TPT1P7-201ENST00000458300 517 ntBASIC4.68□□□□□ -1.66
NUP88Q99567 RPL7P15-201ENST00000461190 712 ntBASIC4.68□□□□□ -1.66
NUP88Q99567 HMGB1P25-201ENST00000468402 607 ntBASIC4.68□□□□□ -1.66
NUP88Q99567 AL139099.1-201ENST00000497398 403 ntBASIC4.68□□□□□ -1.66
NUP88Q99567 SNORA18.6-201ENST00000516792 115 ntBASIC4.68□□□□□ -1.66
NUP88Q99567 AC126177.3-201ENST00000551839 688 ntBASIC4.68□□□□□ -1.66
NUP88Q99567 MIR4528-201ENST00000577763 90 ntBASIC4.68□□□□□ -1.66
NUP88Q99567 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC4.68□□□□□ -1.66
NUP88Q99567 AL139395.1-201ENST00000603662 160 ntBASIC4.68□□□□□ -1.66
NUP88Q99567 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC4.68□□□□□ -1.66
NUP88Q99567 AC012603.1-201ENST00000606424 528 ntBASIC4.68□□□□□ -1.66
NUP88Q99567 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC4.68□□□□□ -1.66
NUP88Q99567 AC138749.5-201ENST00000611461 208 ntBASIC4.68□□□□□ -1.66
NUP88Q99567 Z99129.1-201ENST00000612510 255 ntBASIC4.68□□□□□ -1.66
NUP88Q99567 AC116165.2-201ENST00000616705 206 ntBASIC4.68□□□□□ -1.66
NUP88Q99567 AC039056.2-201ENST00000622261 511 ntBASIC4.68□□□□□ -1.66
NUP88Q99567 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC4.68□□□□□ -1.66
NUP88Q99567 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC4.68□□□□□ -1.66
NUP88Q99567 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
NUP88Q99567 AL356489.2-201ENST00000566968 3528 ntBASIC4.68□□□□□ -1.66
NUP88Q99567 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
NUP88Q99567 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC4.67□□□□□ -1.66
NUP88Q99567 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
NUP88Q99567 RNA5SP124-201ENST00000362739 110 ntBASIC4.67□□□□□ -1.66
NUP88Q99567 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC4.67□□□□□ -1.66
NUP88Q99567 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
NUP88Q99567 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
NUP88Q99567 RNU6-297P-201ENST00000384636 107 ntBASIC4.67□□□□□ -1.66
NUP88Q99567 RNU6-114P-201ENST00000384704 105 ntBASIC4.67□□□□□ -1.66
NUP88Q99567 RPS3AP36-201ENST00000398190 775 ntBASIC4.67□□□□□ -1.66
NUP88Q99567 CCNG1P1-201ENST00000406783 885 ntBASIC4.67□□□□□ -1.66
NUP88Q99567 LINC02089-201ENST00000412360 682 ntTSL 2 BASIC4.67□□□□□ -1.66
NUP88Q99567 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC4.67□□□□□ -1.66
NUP88Q99567 MTCO1P21-201ENST00000416634 589 ntBASIC4.67□□□□□ -1.66
NUP88Q99567 AL137014.1-201ENST00000420490 1226 ntBASIC4.67□□□□□ -1.66
NUP88Q99567 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC4.67□□□□□ -1.66
NUP88Q99567 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC4.67□□□□□ -1.66
NUP88Q99567 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC4.67□□□□□ -1.66
NUP88Q99567 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC4.67□□□□□ -1.66
NUP88Q99567 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC4.67□□□□□ -1.66
NUP88Q99567 ELOCP30-201ENST00000447108 299 ntBASIC4.67□□□□□ -1.66
NUP88Q99567 AC025554.1-201ENST00000505641 188 ntBASIC4.67□□□□□ -1.66
NUP88Q99567 AC116616.1-201ENST00000508815 366 ntTSL 3 BASIC4.67□□□□□ -1.66
NUP88Q99567 AC022616.6-201ENST00000520479 119 ntBASIC4.67□□□□□ -1.66
NUP88Q99567 SMILR-201ENST00000533992 553 ntTSL 4 BASIC4.67□□□□□ -1.66
NUP88Q99567 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC4.67□□□□□ -1.66
NUP88Q99567 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC4.67□□□□□ -1.66
NUP88Q99567 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC4.67□□□□□ -1.66
NUP88Q99567 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC4.67□□□□□ -1.66
NUP88Q99567 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC4.67□□□□□ -1.66
NUP88Q99567 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC4.67□□□□□ -1.66
NUP88Q99567 AC068790.3-201ENST00000602988 553 ntBASIC4.67□□□□□ -1.66
NUP88Q99567 AC073648.5-201ENST00000603502 305 ntBASIC4.67□□□□□ -1.66
NUP88Q99567 AC011468.4-201ENST00000603942 409 ntBASIC4.67□□□□□ -1.66
NUP88Q99567 AC121334.2-201ENST00000605387 271 ntBASIC4.67□□□□□ -1.66
NUP88Q99567 AC098614.4-201ENST00000607601 462 ntBASIC4.67□□□□□ -1.66
NUP88Q99567 AC092354.2-201ENST00000607786 514 ntBASIC4.67□□□□□ -1.66
NUP88Q99567 LINC00901.1-201ENST00000617252 152 ntBASIC4.67□□□□□ -1.66
NUP88Q99567 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
NUP88Q99567 AL354798.1-201ENST00000622505 329 ntBASIC4.67□□□□□ -1.66
NUP88Q99567 AL356585.4-201ENST00000623078 1229 ntBASIC4.67□□□□□ -1.66
NUP88Q99567 AC034229.5-201ENST00000624258 185 ntBASIC4.67□□□□□ -1.66
NUP88Q99567 AC092447.7-201ENST00000422212 1621 ntBASIC4.67□□□□□ -1.66
NUP88Q99567 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC4.67□□□□□ -1.66
NUP88Q99567 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC4.67□□□□□ -1.66
NUP88Q99567 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
NUP88Q99567 AC011460.1-201ENST00000636268 1834 ntBASIC4.67□□□□□ -1.66
NUP88Q99567 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
NUP88Q99567 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC4.66□□□□□ -1.66
NUP88Q99567 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
NUP88Q99567 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC4.66□□□□□ -1.66
NUP88Q99567 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
NUP88Q99567 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC4.66□□□□□ -1.66
NUP88Q99567 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
NUP88Q99567 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
NUP88Q99567 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC4.66□□□□□ -1.66
NUP88Q99567 RPL7P25-201ENST00000404151 721 ntBASIC4.66□□□□□ -1.66
NUP88Q99567 RNU6-712P-201ENST00000410558 100 ntBASIC4.66□□□□□ -1.66
NUP88Q99567 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC4.66□□□□□ -1.66
NUP88Q99567 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC4.66□□□□□ -1.66
NUP88Q99567 MTND1P34-201ENST00000438556 671 ntBASIC4.66□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms