Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 HPVC1-201ENST00000629899 1198 ntBASIC1.85□□□□□ -2.11
VPS13AQ96RL7 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC1.85□□□□□ -2.11
VPS13AQ96RL7 AC090518.1-201ENST00000562300 1495 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
VPS13AQ96RL7 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC1.85□□□□□ -2.11
VPS13AQ96RL7 SET-203ENST00000372688 801 ntTSL 2 BASIC1.85□□□□□ -2.11
VPS13AQ96RL7 AL358075.3-201ENST00000426289 226 ntBASIC1.85□□□□□ -2.11
VPS13AQ96RL7 PIGFP3-201ENST00000441918 722 ntBASIC1.85□□□□□ -2.11
VPS13AQ96RL7 RPS4XP11-201ENST00000446897 772 ntBASIC1.85□□□□□ -2.11
VPS13AQ96RL7 AC006390.1-201ENST00000508068 283 ntBASIC1.85□□□□□ -2.11
VPS13AQ96RL7 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC1.85□□□□□ -2.11
VPS13AQ96RL7 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC1.85□□□□□ -2.11
VPS13AQ96RL7 AL035411.2-201ENST00000604022 421 ntBASIC1.85□□□□□ -2.11
VPS13AQ96RL7 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.85□□□□□ -2.11
VPS13AQ96RL7 BRIP1-202ENST00000577598 3969 ntAPPRIS ALT2 TSL 5 BASIC1.85□□□□□ -2.11
VPS13AQ96RL7 AC095050.2-201ENST00000510748 1458 ntBASIC1.85□□□□□ -2.11
VPS13AQ96RL7 ALG6-201ENST00000263440 1895 ntAPPRIS ALT1 TSL 5 BASIC1.85□□□□□ -2.11
VPS13AQ96RL7 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC1.85□□□□□ -2.11
VPS13AQ96RL7 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC1.84□□□□□ -2.11
VPS13AQ96RL7 NDUFB4P5-201ENST00000415445 361 ntBASIC1.84□□□□□ -2.11
VPS13AQ96RL7 ARPC3P1-201ENST00000437218 533 ntBASIC1.84□□□□□ -2.11
VPS13AQ96RL7 CLEC5A-202ENST00000438351 743 ntTSL 3 BASIC1.84□□□□□ -2.11
VPS13AQ96RL7 AL138799.3-201ENST00000438968 350 ntBASIC1.84□□□□□ -2.11
VPS13AQ96RL7 USP9YP8-201ENST00000441913 500 ntBASIC1.84□□□□□ -2.11
VPS13AQ96RL7 HSPE1P28-201ENST00000443139 211 ntBASIC1.84□□□□□ -2.11
VPS13AQ96RL7 AP000852.1-201ENST00000472460 573 ntBASIC1.84□□□□□ -2.11
VPS13AQ96RL7 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC1.84□□□□□ -2.11
VPS13AQ96RL7 AC008526.1-201ENST00000509149 338 ntBASIC1.84□□□□□ -2.11
VPS13AQ96RL7 IGHV3-76-201ENST00000522465 295 ntBASIC1.84□□□□□ -2.11
VPS13AQ96RL7 AC004486.1-201ENST00000546846 233 ntBASIC1.84□□□□□ -2.11
VPS13AQ96RL7 AC009101.2-201ENST00000564293 456 ntTSL 3 BASIC1.84□□□□□ -2.11
VPS13AQ96RL7 MIR5089-201ENST00000580047 84 ntBASIC1.84□□□□□ -2.11
VPS13AQ96RL7 SLC26A7-210ENST00000617233 5257 ntAPPRIS P1 TSL 5 BASIC1.84□□□□□ -2.11
VPS13AQ96RL7 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC1.84□□□□□ -2.11
VPS13AQ96RL7 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC1.84□□□□□ -2.11
VPS13AQ96RL7 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC1.84□□□□□ -2.11
VPS13AQ96RL7 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC1.84□□□□□ -2.11
VPS13AQ96RL7 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC1.84□□□□□ -2.12
VPS13AQ96RL7 MTND6P18-201ENST00000439477 513 ntBASIC1.84□□□□□ -2.12
VPS13AQ96RL7 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.84□□□□□ -2.12
VPS13AQ96RL7 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC1.84□□□□□ -2.12
VPS13AQ96RL7 MIR3186-201ENST00000577404 85 ntBASIC1.84□□□□□ -2.12
VPS13AQ96RL7 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC1.84□□□□□ -2.12
VPS13AQ96RL7 AC107021.2-201ENST00000567714 2095 ntBASIC1.84□□□□□ -2.12
VPS13AQ96RL7 CCDC169-203ENST00000379862 624 ntTSL 5 BASIC1.84□□□□□ -2.12
VPS13AQ96RL7 SNORD21-201ENST00000383953 95 ntBASIC1.84□□□□□ -2.12
VPS13AQ96RL7 AL035604.1-201ENST00000416481 531 ntTSL 3 BASIC1.84□□□□□ -2.12
VPS13AQ96RL7 AC244505.4-201ENST00000434905 287 ntBASIC1.84□□□□□ -2.12
VPS13AQ96RL7 SSXP5-201ENST00000443473 287 ntBASIC1.84□□□□□ -2.12
VPS13AQ96RL7 HMGN1P7-201ENST00000491722 313 ntBASIC1.84□□□□□ -2.12
VPS13AQ96RL7 AC023202.1-201ENST00000521681 491 ntTSL 3 BASIC1.84□□□□□ -2.12
VPS13AQ96RL7 AL353748.2-201ENST00000622148 471 ntBASIC1.84□□□□□ -2.12
VPS13AQ96RL7 AC005336.3-201ENST00000623833 2679 ntBASIC1.83□□□□□ -2.12
VPS13AQ96RL7 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.83□□□□□ -2.12
VPS13AQ96RL7 AC026523.2-201ENST00000625039 7739 ntBASIC1.83□□□□□ -2.12
VPS13AQ96RL7 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC1.83□□□□□ -2.12
VPS13AQ96RL7 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC1.83□□□□□ -2.12
VPS13AQ96RL7 DEFA7P-201ENST00000382676 285 ntBASIC1.83□□□□□ -2.12
VPS13AQ96RL7 NCSTNP1-201ENST00000406229 144 ntBASIC1.83□□□□□ -2.12
VPS13AQ96RL7 RN7SKP123-201ENST00000410732 291 ntBASIC1.83□□□□□ -2.12
VPS13AQ96RL7 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC1.83□□□□□ -2.12
VPS13AQ96RL7 AC104564.1-201ENST00000493028 407 ntBASIC1.83□□□□□ -2.12
VPS13AQ96RL7 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC1.83□□□□□ -2.12
VPS13AQ96RL7 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.83□□□□□ -2.12
VPS13AQ96RL7 KIF14-202ENST00000614960 6838 ntAPPRIS P1 TSL 1 (best) BASIC1.83□□□□□ -2.12
VPS13AQ96RL7 PROS2P-201ENST00000474651 1951 ntBASIC1.83□□□□□ -2.12
VPS13AQ96RL7 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC1.83□□□□□ -2.12
VPS13AQ96RL7 AL355578.1-201ENST00000607405 1328 ntBASIC1.83□□□□□ -2.12
VPS13AQ96RL7 OR14A16-201ENST00000357627 930 ntAPPRIS P1 BASIC1.83□□□□□ -2.12
VPS13AQ96RL7 AIMP1P1-201ENST00000418670 937 ntBASIC1.83□□□□□ -2.12
VPS13AQ96RL7 AC027124.2-201ENST00000428249 105 ntBASIC1.83□□□□□ -2.12
VPS13AQ96RL7 PTP4A1P6-201ENST00000531034 478 ntBASIC1.83□□□□□ -2.12
VPS13AQ96RL7 AC234775.3-201ENST00000564612 656 ntBASIC1.83□□□□□ -2.12
VPS13AQ96RL7 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
VPS13AQ96RL7 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC1.82□□□□□ -2.12
VPS13AQ96RL7 MIR625-201ENST00000385047 85 ntBASIC1.82□□□□□ -2.12
VPS13AQ96RL7 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC1.82□□□□□ -2.12
VPS13AQ96RL7 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC1.82□□□□□ -2.12
VPS13AQ96RL7 AL160237.3-201ENST00000604114 1013 ntBASIC1.82□□□□□ -2.12
VPS13AQ96RL7 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC1.82□□□□□ -2.12
VPS13AQ96RL7 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC1.82□□□□□ -2.12
VPS13AQ96RL7 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC1.82□□□□□ -2.12
VPS13AQ96RL7 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC1.82□□□□□ -2.12
VPS13AQ96RL7 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC1.82□□□□□ -2.12
VPS13AQ96RL7 AC011604.1-201ENST00000545978 196 ntBASIC1.82□□□□□ -2.12
VPS13AQ96RL7 RAB3IP-214ENST00000550847 670 ntTSL 3 BASIC1.82□□□□□ -2.12
VPS13AQ96RL7 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC1.82□□□□□ -2.12
VPS13AQ96RL7 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC1.82□□□□□ -2.12
VPS13AQ96RL7 OR4G1P-201ENST00000588632 938 ntBASIC1.82□□□□□ -2.12
VPS13AQ96RL7 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.82□□□□□ -2.12
VPS13AQ96RL7 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
VPS13AQ96RL7 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC1.82□□□□□ -2.12
VPS13AQ96RL7 AC013404.1-201ENST00000413068 249 ntBASIC1.82□□□□□ -2.12
VPS13AQ96RL7 AL589765.3-201ENST00000446084 462 ntBASIC1.82□□□□□ -2.12
VPS13AQ96RL7 GZMAP1-201ENST00000503054 631 ntBASIC1.82□□□□□ -2.12
VPS13AQ96RL7 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC1.82□□□□□ -2.12
VPS13AQ96RL7 AC093331.1-201ENST00000521474 169 ntBASIC1.82□□□□□ -2.12
VPS13AQ96RL7 AC010680.1-201ENST00000590024 3590 ntBASIC1.81□□□□□ -2.12
VPS13AQ96RL7 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
VPS13AQ96RL7 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
VPS13AQ96RL7 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 106.6 ms