Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 MIR4637-201ENST00000582405 84 ntBASIC3.6□□□□□ -1.83
CCDC43Q96MW1 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC3.6□□□□□ -1.83
CCDC43Q96MW1 AC096947.1-201ENST00000603233 470 ntBASIC3.6□□□□□ -1.83
CCDC43Q96MW1 AL031176.1-201ENST00000604554 466 ntBASIC3.6□□□□□ -1.83
CCDC43Q96MW1 MIR7112-201ENST00000616126 65 ntBASIC3.6□□□□□ -1.83
CCDC43Q96MW1 AL158163.2-201ENST00000619110 700 ntBASIC3.6□□□□□ -1.83
CCDC43Q96MW1 AC084824.4-201ENST00000620106 731 ntBASIC3.6□□□□□ -1.83
CCDC43Q96MW1 AC123767.1-202ENST00000620407 817 ntBASIC3.6□□□□□ -1.83
CCDC43Q96MW1 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC3.6□□□□□ -1.83
CCDC43Q96MW1 PCNP-208ENST00000627393 136 ntTSL 2 BASIC3.6□□□□□ -1.83
CCDC43Q96MW1 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
CCDC43Q96MW1 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
CCDC43Q96MW1 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.6□□□□□ -1.83
CCDC43Q96MW1 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC3.59□□□□□ -1.83
CCDC43Q96MW1 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC3.59□□□□□ -1.83
CCDC43Q96MW1 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC3.59□□□□□ -1.83
CCDC43Q96MW1 RNA5SP383-201ENST00000362934 120 ntBASIC3.59□□□□□ -1.83
CCDC43Q96MW1 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC3.59□□□□□ -1.83
CCDC43Q96MW1 NFIB-202ENST00000380924 840 ntTSL 5 BASIC3.59□□□□□ -1.83
CCDC43Q96MW1 SNORA11.1-201ENST00000408133 129 ntBASIC3.59□□□□□ -1.83
CCDC43Q96MW1 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
CCDC43Q96MW1 AL449283.1-202ENST00000418249 604 ntBASIC3.59□□□□□ -1.83
CCDC43Q96MW1 AL137014.1-201ENST00000420490 1226 ntBASIC3.59□□□□□ -1.83
CCDC43Q96MW1 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC3.59□□□□□ -1.83
CCDC43Q96MW1 AC233728.2-201ENST00000425348 757 ntBASIC3.59□□□□□ -1.83
CCDC43Q96MW1 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
CCDC43Q96MW1 AC007742.1-201ENST00000425789 329 ntBASIC3.59□□□□□ -1.83
CCDC43Q96MW1 EZH2P1-201ENST00000431167 291 ntBASIC3.59□□□□□ -1.83
CCDC43Q96MW1 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC3.59□□□□□ -1.83
CCDC43Q96MW1 ELOCP26-201ENST00000436067 329 ntBASIC3.59□□□□□ -1.83
CCDC43Q96MW1 RAC1P7-201ENST00000445367 377 ntBASIC3.59□□□□□ -1.83
CCDC43Q96MW1 OR6K5P-201ENST00000447050 945 ntBASIC3.59□□□□□ -1.83
CCDC43Q96MW1 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC3.59□□□□□ -1.83
CCDC43Q96MW1 RN7SL863P-201ENST00000462370 296 ntBASIC3.59□□□□□ -1.83
CCDC43Q96MW1 AC104982.1-201ENST00000478775 574 ntBASIC3.59□□□□□ -1.83
CCDC43Q96MW1 AC108734.3-201ENST00000481241 1165 ntBASIC3.59□□□□□ -1.83
CCDC43Q96MW1 AC023424.2-201ENST00000493479 777 ntBASIC3.59□□□□□ -1.83
CCDC43Q96MW1 TMEM251P1-201ENST00000503717 318 ntBASIC3.59□□□□□ -1.83
CCDC43Q96MW1 AC008700.1-201ENST00000512571 654 ntTSL 3 BASIC3.59□□□□□ -1.83
CCDC43Q96MW1 PHBP14-201ENST00000512887 367 ntBASIC3.59□□□□□ -1.83
CCDC43Q96MW1 AP003181.1-201ENST00000528811 445 ntTSL 3 BASIC3.59□□□□□ -1.83
CCDC43Q96MW1 AC023908.1-201ENST00000559899 567 ntTSL 4 BASIC3.59□□□□□ -1.83
CCDC43Q96MW1 AL845331.3-202ENST00000562856 261 ntBASIC3.59□□□□□ -1.83
CCDC43Q96MW1 AP005433.1-201ENST00000582939 620 ntTSL 2 BASIC3.59□□□□□ -1.83
CCDC43Q96MW1 MIR5195-201ENST00000583555 115 ntBASIC3.59□□□□□ -1.83
CCDC43Q96MW1 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC3.59□□□□□ -1.83
CCDC43Q96MW1 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC3.59□□□□□ -1.83
CCDC43Q96MW1 AC091903.1-201ENST00000624322 454 ntBASIC3.59□□□□□ -1.83
CCDC43Q96MW1 AC090897.3-201ENST00000636973 1157 ntBASIC3.59□□□□□ -1.83
CCDC43Q96MW1 ZNF542P-204ENST00000482727 1305 ntBASIC3.59□□□□□ -1.83
CCDC43Q96MW1 AC109315.1-201ENST00000584143 1347 ntBASIC3.59□□□□□ -1.83
CCDC43Q96MW1 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC3.59□□□□□ -1.84
CCDC43Q96MW1 CDR1-202ENST00000625883 1485 ntBASIC3.59□□□□□ -1.84
CCDC43Q96MW1 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.58□□□□□ -1.84
CCDC43Q96MW1 ZNF826P-207ENST00000622273 1910 ntBASIC3.58□□□□□ -1.84
CCDC43Q96MW1 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.58□□□□□ -1.84
CCDC43Q96MW1 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.58□□□□□ -1.84
CCDC43Q96MW1 OR1S2-201ENST00000302592 978 ntBASIC3.58□□□□□ -1.84
CCDC43Q96MW1 MIR148B-201ENST00000362252 99 ntBASIC3.58□□□□□ -1.84
CCDC43Q96MW1 RNA5-8SP4-201ENST00000365096 150 ntBASIC3.58□□□□□ -1.84
CCDC43Q96MW1 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC3.58□□□□□ -1.84
CCDC43Q96MW1 Y_RNA.408-201ENST00000383987 102 ntBASIC3.58□□□□□ -1.84
CCDC43Q96MW1 RNU6-882P-201ENST00000391025 103 ntBASIC3.58□□□□□ -1.84
CCDC43Q96MW1 RNA5SP229-201ENST00000410809 99 ntBASIC3.58□□□□□ -1.84
CCDC43Q96MW1 SSXP9-201ENST00000417503 292 ntBASIC3.58□□□□□ -1.84
CCDC43Q96MW1 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC3.58□□□□□ -1.84
CCDC43Q96MW1 ISCA1P2-201ENST00000438679 421 ntBASIC3.58□□□□□ -1.84
CCDC43Q96MW1 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC3.58□□□□□ -1.84
CCDC43Q96MW1 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.58□□□□□ -1.84
CCDC43Q96MW1 AC115115.1-201ENST00000449927 248 ntBASIC3.58□□□□□ -1.84
CCDC43Q96MW1 AC090453.1-201ENST00000495560 436 ntBASIC3.58□□□□□ -1.84
CCDC43Q96MW1 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC3.58□□□□□ -1.84
CCDC43Q96MW1 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC3.58□□□□□ -1.84
CCDC43Q96MW1 HMGB1P28-201ENST00000507778 552 ntBASIC3.58□□□□□ -1.84
CCDC43Q96MW1 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC3.58□□□□□ -1.84
CCDC43Q96MW1 RNU6-711P-201ENST00000517255 106 ntBASIC3.58□□□□□ -1.84
CCDC43Q96MW1 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC3.58□□□□□ -1.84
CCDC43Q96MW1 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC3.58□□□□□ -1.84
CCDC43Q96MW1 AC027544.2-201ENST00000539313 630 ntTSL 5 BASIC3.58□□□□□ -1.84
CCDC43Q96MW1 REXO2-218ENST00000544827 880 ntTSL 3 BASIC3.58□□□□□ -1.84
CCDC43Q96MW1 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC3.58□□□□□ -1.84
CCDC43Q96MW1 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC3.58□□□□□ -1.84
CCDC43Q96MW1 ZFAND6-208ENST00000558688 780 ntTSL 2 BASIC3.58□□□□□ -1.84
CCDC43Q96MW1 HSPE1P3-201ENST00000559254 309 ntBASIC3.58□□□□□ -1.84
CCDC43Q96MW1 MTCO3P24-201ENST00000572729 782 ntBASIC3.58□□□□□ -1.84
CCDC43Q96MW1 OR4K8P-201ENST00000578842 1048 ntBASIC3.58□□□□□ -1.84
CCDC43Q96MW1 AC012443.1-201ENST00000605605 231 ntBASIC3.58□□□□□ -1.84
CCDC43Q96MW1 uc_338.25-201ENST00000613756 156 ntBASIC3.58□□□□□ -1.84
CCDC43Q96MW1 AC023158.2-201ENST00000614876 543 ntBASIC3.58□□□□□ -1.84
CCDC43Q96MW1 AC002076.2-201ENST00000617362 122 ntBASIC3.58□□□□□ -1.84
CCDC43Q96MW1 AC013437.2-201ENST00000639587 677 ntBASIC3.58□□□□□ -1.84
CCDC43Q96MW1 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
CCDC43Q96MW1 SRP72P2-201ENST00000344851 1979 ntBASIC3.58□□□□□ -1.84
CCDC43Q96MW1 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.58□□□□□ -1.84
CCDC43Q96MW1 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.57□□□□□ -1.84
CCDC43Q96MW1 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
CCDC43Q96MW1 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC3.57□□□□□ -1.84
CCDC43Q96MW1 MIR135A2-201ENST00000384854 100 ntBASIC3.57□□□□□ -1.84
CCDC43Q96MW1 MIR493-201ENST00000385254 89 ntBASIC3.57□□□□□ -1.84
CCDC43Q96MW1 RNU1-101P-201ENST00000391171 127 ntBASIC3.57□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 101.8 ms