Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 AC103798.2-201ENST00000624292 632 ntBASIC2.59□□□□□ -1.99
CCDC42Q96M95 AC069528.2-201ENST00000624849 1991 ntBASIC2.59□□□□□ -2
CCDC42Q96M95 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -2
CCDC42Q96M95 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC2.59□□□□□ -2
CCDC42Q96M95 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC2.58□□□□□ -2
CCDC42Q96M95 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
CCDC42Q96M95 RNU6-1249P-201ENST00000363237 111 ntBASIC2.58□□□□□ -2
CCDC42Q96M95 MIR7-1-201ENST00000384871 110 ntBASIC2.58□□□□□ -2
CCDC42Q96M95 RNA5SP252-201ENST00000391131 119 ntBASIC2.58□□□□□ -2
CCDC42Q96M95 SYCP3-202ENST00000392924 845 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
CCDC42Q96M95 AC107083.1-201ENST00000439643 279 ntBASIC2.58□□□□□ -2
CCDC42Q96M95 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.58□□□□□ -2
CCDC42Q96M95 SRI-210ENST00000490437 570 ntTSL 2 BASIC2.58□□□□□ -2
CCDC42Q96M95 AC135721.1-201ENST00000497954 479 ntBASIC2.58□□□□□ -2
CCDC42Q96M95 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC2.58□□□□□ -2
CCDC42Q96M95 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC2.58□□□□□ -2
CCDC42Q96M95 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC2.58□□□□□ -2
CCDC42Q96M95 SETP12-201ENST00000514068 805 ntBASIC2.58□□□□□ -2
CCDC42Q96M95 RNA5SP320-201ENST00000516263 124 ntBASIC2.58□□□□□ -2
CCDC42Q96M95 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC2.58□□□□□ -2
CCDC42Q96M95 AHI1-217ENST00000534469 680 ntTSL 3 BASIC2.58□□□□□ -2
CCDC42Q96M95 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC2.58□□□□□ -2
CCDC42Q96M95 AC016134.1-201ENST00000565259 701 ntTSL 3 BASIC2.58□□□□□ -2
CCDC42Q96M95 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC2.58□□□□□ -2
CCDC42Q96M95 MYL12BP1-201ENST00000569826 507 ntBASIC2.58□□□□□ -2
CCDC42Q96M95 GLUD1P4-201ENST00000590914 418 ntBASIC2.58□□□□□ -2
CCDC42Q96M95 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC2.58□□□□□ -2
CCDC42Q96M95 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC2.58□□□□□ -2
CCDC42Q96M95 AC099654.7-201ENST00000635788 2127 ntBASIC2.58□□□□□ -2
CCDC42Q96M95 AC104446.1-201ENST00000613728 1321 ntBASIC2.58□□□□□ -2
CCDC42Q96M95 AC011460.1-201ENST00000636268 1834 ntBASIC2.58□□□□□ -2
CCDC42Q96M95 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
CCDC42Q96M95 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
CCDC42Q96M95 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.57□□□□□ -2
CCDC42Q96M95 OR5J1P-201ENST00000313544 939 ntBASIC2.57□□□□□ -2
CCDC42Q96M95 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC2.57□□□□□ -2
CCDC42Q96M95 C1orf146-201ENST00000370373 871 ntTSL 5 BASIC2.57□□□□□ -2
CCDC42Q96M95 IL6ST-204ENST00000381293 612 ntTSL 1 (best) BASIC2.57□□□□□ -2
CCDC42Q96M95 RNU6-761P-201ENST00000384148 107 ntBASIC2.57□□□□□ -2
CCDC42Q96M95 RNU6-1226P-201ENST00000384317 107 ntBASIC2.57□□□□□ -2
CCDC42Q96M95 SNORA80E-201ENST00000384744 137 ntBASIC2.57□□□□□ -2
CCDC42Q96M95 RPS4XP3-201ENST00000398541 413 ntBASIC2.57□□□□□ -2
CCDC42Q96M95 RPS4XP7-201ENST00000406274 780 ntBASIC2.57□□□□□ -2
CCDC42Q96M95 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC2.57□□□□□ -2
CCDC42Q96M95 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC2.57□□□□□ -2
CCDC42Q96M95 RPS15AP7-201ENST00000439294 405 ntBASIC2.57□□□□□ -2
CCDC42Q96M95 AC000041.1-201ENST00000439655 175 ntBASIC2.57□□□□□ -2
CCDC42Q96M95 AL645638.1-201ENST00000440519 361 ntBASIC2.57□□□□□ -2
CCDC42Q96M95 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC2.57□□□□□ -2
CCDC42Q96M95 OR5H5P-201ENST00000503164 928 ntBASIC2.57□□□□□ -2
CCDC42Q96M95 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC2.57□□□□□ -2
CCDC42Q96M95 AC108157.1-201ENST00000510511 539 ntBASIC2.57□□□□□ -2
CCDC42Q96M95 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
CCDC42Q96M95 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC2.57□□□□□ -2
CCDC42Q96M95 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC2.57□□□□□ -2
CCDC42Q96M95 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC2.57□□□□□ -2
CCDC42Q96M95 VN1R90P-201ENST00000595717 726 ntBASIC2.57□□□□□ -2
CCDC42Q96M95 AL355812.1-201ENST00000603215 216 ntBASIC2.57□□□□□ -2
CCDC42Q96M95 AC018926.3-201ENST00000618841 406 ntBASIC2.57□□□□□ -2
CCDC42Q96M95 AC023490.1-202ENST00000620909 820 ntTSL 5 BASIC2.57□□□□□ -2
CCDC42Q96M95 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.57□□□□□ -2
CCDC42Q96M95 IL33-203ENST00000456383 2501 ntTSL 5 BASIC2.57□□□□□ -2
CCDC42Q96M95 RPL21P132-201ENST00000331267 462 ntBASIC2.56□□□□□ -2
CCDC42Q96M95 RNU6-989P-201ENST00000362756 107 ntBASIC2.56□□□□□ -2
CCDC42Q96M95 RNU4-23P-201ENST00000362839 140 ntBASIC2.56□□□□□ -2
CCDC42Q96M95 RNA5SP139-201ENST00000364340 117 ntBASIC2.56□□□□□ -2
CCDC42Q96M95 SNORA1.3-201ENST00000384676 136 ntBASIC2.56□□□□□ -2
CCDC42Q96M95 MIR34A-201ENST00000385130 110 ntBASIC2.56□□□□□ -2
CCDC42Q96M95 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC2.56□□□□□ -2
CCDC42Q96M95 U3.37-201ENST00000408528 213 ntBASIC2.56□□□□□ -2
CCDC42Q96M95 UBE2Q2P12-201ENST00000414573 204 ntBASIC2.56□□□□□ -2
CCDC42Q96M95 AC092447.6-201ENST00000414578 210 ntBASIC2.56□□□□□ -2
CCDC42Q96M95 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC2.56□□□□□ -2
CCDC42Q96M95 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC2.56□□□□□ -2
CCDC42Q96M95 AC114973.1-201ENST00000429057 632 ntBASIC2.56□□□□□ -2
CCDC42Q96M95 AC010723.1-201ENST00000435111 540 ntTSL 3 BASIC2.56□□□□□ -2
CCDC42Q96M95 TRIM60P8Y-201ENST00000436338 762 ntBASIC2.56□□□□□ -2
CCDC42Q96M95 AC092685.1-201ENST00000447960 1243 ntBASIC2.56□□□□□ -2
CCDC42Q96M95 SETP11-201ENST00000473027 690 ntBASIC2.56□□□□□ -2
CCDC42Q96M95 RPL36AP51-201ENST00000487216 318 ntBASIC2.56□□□□□ -2
CCDC42Q96M95 AC096751.1-202ENST00000502691 1067 ntBASIC2.56□□□□□ -2
CCDC42Q96M95 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC2.56□□□□□ -2
CCDC42Q96M95 AC008716.1-201ENST00000511084 513 ntBASIC2.56□□□□□ -2
CCDC42Q96M95 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC2.56□□□□□ -2
CCDC42Q96M95 RNU1-104P-201ENST00000517280 175 ntBASIC2.56□□□□□ -2
CCDC42Q96M95 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC2.56□□□□□ -2
CCDC42Q96M95 NOP56P3-201ENST00000549457 385 ntBASIC2.56□□□□□ -2
CCDC42Q96M95 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC2.56□□□□□ -2
CCDC42Q96M95 AC090666.1-201ENST00000578241 445 ntBASIC2.56□□□□□ -2
CCDC42Q96M95 AC116003.2-201ENST00000579278 748 ntTSL 2 BASIC2.56□□□□□ -2
CCDC42Q96M95 AC017100.2-201ENST00000584628 355 ntBASIC2.56□□□□□ -2
CCDC42Q96M95 AC010620.2-201ENST00000600135 313 ntBASIC2.56□□□□□ -2
CCDC42Q96M95 AC013468.1-201ENST00000608680 598 ntBASIC2.56□□□□□ -2
CCDC42Q96M95 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.56□□□□□ -2
CCDC42Q96M95 PABPC1P9-201ENST00000426076 1612 ntBASIC2.56□□□□□ -2
CCDC42Q96M95 AC026241.1-201ENST00000517873 2142 ntBASIC2.56□□□□□ -2
CCDC42Q96M95 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.56□□□□□ -2
CCDC42Q96M95 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC2.55□□□□□ -2
CCDC42Q96M95 MIR144-201ENST00000384886 86 ntBASIC2.55□□□□□ -2
CCDC42Q96M95 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC2.55□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 84.9 ms