Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 SNORA62.3-201ENST00000365110 153 ntBASIC3.51□□□□□ -1.85
VMP1Q96GC9 DYNLT3P1-201ENST00000378574 347 ntBASIC3.51□□□□□ -1.85
VMP1Q96GC9 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC3.51□□□□□ -1.85
VMP1Q96GC9 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC3.51□□□□□ -1.85
VMP1Q96GC9 AC245054.1-201ENST00000420944 258 ntBASIC3.51□□□□□ -1.85
VMP1Q96GC9 AC010967.1-201ENST00000421575 489 ntTSL 5 BASIC3.51□□□□□ -1.85
VMP1Q96GC9 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC3.51□□□□□ -1.85
VMP1Q96GC9 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC3.51□□□□□ -1.85
VMP1Q96GC9 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC3.51□□□□□ -1.85
VMP1Q96GC9 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC3.51□□□□□ -1.85
VMP1Q96GC9 EEF1A1P39-201ENST00000440791 250 ntBASIC3.51□□□□□ -1.85
VMP1Q96GC9 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC3.51□□□□□ -1.85
VMP1Q96GC9 AC007967.1-201ENST00000455422 1159 ntBASIC3.51□□□□□ -1.85
VMP1Q96GC9 AC010099.1-201ENST00000455434 375 ntBASIC3.51□□□□□ -1.85
VMP1Q96GC9 MTND1P16-201ENST00000465177 898 ntBASIC3.51□□□□□ -1.85
VMP1Q96GC9 TRBV12-2-201ENST00000489763 344 ntBASIC3.51□□□□□ -1.85
VMP1Q96GC9 HMGN1P11-201ENST00000508668 303 ntBASIC3.51□□□□□ -1.85
VMP1Q96GC9 RNU6-714P-201ENST00000516963 103 ntBASIC3.51□□□□□ -1.85
VMP1Q96GC9 SNORA31.22-201ENST00000517204 135 ntBASIC3.51□□□□□ -1.85
VMP1Q96GC9 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC3.51□□□□□ -1.85
VMP1Q96GC9 DEFB131D-201ENST00000526803 184 ntBASIC3.51□□□□□ -1.85
VMP1Q96GC9 AP003969.1-201ENST00000531846 400 ntTSL 2 BASIC3.51□□□□□ -1.85
VMP1Q96GC9 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC3.51□□□□□ -1.85
VMP1Q96GC9 ZKSCAN7P1-201ENST00000543668 673 ntBASIC3.51□□□□□ -1.85
VMP1Q96GC9 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC3.51□□□□□ -1.85
VMP1Q96GC9 AC090680.2-201ENST00000550279 742 ntTSL 3 BASIC3.51□□□□□ -1.85
VMP1Q96GC9 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC3.51□□□□□ -1.85
VMP1Q96GC9 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC3.51□□□□□ -1.85
VMP1Q96GC9 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC3.51□□□□□ -1.85
VMP1Q96GC9 DUXAP3-201ENST00000603616 594 ntBASIC3.51□□□□□ -1.85
VMP1Q96GC9 AC005014.3-201ENST00000605985 190 ntBASIC3.51□□□□□ -1.85
VMP1Q96GC9 AC004067.1-201ENST00000608733 700 ntBASIC3.51□□□□□ -1.85
VMP1Q96GC9 AC109809.1-201ENST00000619665 545 ntBASIC3.51□□□□□ -1.85
VMP1Q96GC9 AC243312.2-201ENST00000623340 601 ntBASIC3.51□□□□□ -1.85
VMP1Q96GC9 AC090617.7-201ENST00000623952 126 ntBASIC3.51□□□□□ -1.85
VMP1Q96GC9 AP000676.4-201ENST00000624659 623 ntBASIC3.51□□□□□ -1.85
VMP1Q96GC9 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.51□□□□□ -1.85
VMP1Q96GC9 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC3.51□□□□□ -1.85
VMP1Q96GC9 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC3.51□□□□□ -1.85
VMP1Q96GC9 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
VMP1Q96GC9 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
VMP1Q96GC9 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC3.5□□□□□ -1.85
VMP1Q96GC9 Y_RNA.311-201ENST00000365068 96 ntBASIC3.5□□□□□ -1.85
VMP1Q96GC9 MLLT3-201ENST00000380321 708 ntTSL 3 BASIC3.5□□□□□ -1.85
VMP1Q96GC9 MIR620-201ENST00000385232 95 ntBASIC3.5□□□□□ -1.85
VMP1Q96GC9 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC3.5□□□□□ -1.85
VMP1Q96GC9 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3.5□□□□□ -1.85
VMP1Q96GC9 RNU6-1176P-201ENST00000390955 107 ntBASIC3.5□□□□□ -1.85
VMP1Q96GC9 ERHP2-201ENST00000402323 299 ntBASIC3.5□□□□□ -1.85
VMP1Q96GC9 RN7SKP27-201ENST00000410684 333 ntBASIC3.5□□□□□ -1.85
VMP1Q96GC9 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC3.5□□□□□ -1.85
VMP1Q96GC9 RPS3AP37-201ENST00000419176 745 ntBASIC3.5□□□□□ -1.85
VMP1Q96GC9 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.5□□□□□ -1.85
VMP1Q96GC9 AL590383.1-201ENST00000428602 75 ntBASIC3.5□□□□□ -1.85
VMP1Q96GC9 AC018644.1-201ENST00000429934 551 ntBASIC3.5□□□□□ -1.85
VMP1Q96GC9 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC3.5□□□□□ -1.85
VMP1Q96GC9 AC009237.8-201ENST00000445492 379 ntBASIC3.5□□□□□ -1.85
VMP1Q96GC9 AC002381.1-201ENST00000447049 280 ntBASIC3.5□□□□□ -1.85
VMP1Q96GC9 AL133547.1-201ENST00000448546 220 ntBASIC3.5□□□□□ -1.85
VMP1Q96GC9 AC006480.1-201ENST00000449887 378 ntBASIC3.5□□□□□ -1.85
VMP1Q96GC9 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC3.5□□□□□ -1.85
VMP1Q96GC9 ACTR3P3-201ENST00000480448 893 ntBASIC3.5□□□□□ -1.85
VMP1Q96GC9 RAC1P2-201ENST00000511164 579 ntBASIC3.5□□□□□ -1.85
VMP1Q96GC9 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC3.5□□□□□ -1.85
VMP1Q96GC9 RNU6-150P-201ENST00000516237 95 ntBASIC3.5□□□□□ -1.85
VMP1Q96GC9 SNORA31.26-201ENST00000517250 137 ntBASIC3.5□□□□□ -1.85
VMP1Q96GC9 PAICSP4-201ENST00000517543 1253 ntBASIC3.5□□□□□ -1.85
VMP1Q96GC9 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC3.5□□□□□ -1.85
VMP1Q96GC9 TMEM68-214ENST00000523073 536 ntTSL 3 BASIC3.5□□□□□ -1.85
VMP1Q96GC9 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC3.5□□□□□ -1.85
VMP1Q96GC9 OR6C7P-201ENST00000547875 934 ntBASIC3.5□□□□□ -1.85
VMP1Q96GC9 MTCYBP23-201ENST00000558717 1102 ntBASIC3.5□□□□□ -1.85
VMP1Q96GC9 AC090695.1-201ENST00000561269 1222 ntBASIC3.5□□□□□ -1.85
VMP1Q96GC9 AC037471.2-201ENST00000564941 598 ntBASIC3.5□□□□□ -1.85
VMP1Q96GC9 SNORA62.6-201ENST00000606322 83 ntBASIC3.5□□□□□ -1.85
VMP1Q96GC9 AC009269.6-201ENST00000621778 588 ntBASIC3.5□□□□□ -1.85
VMP1Q96GC9 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
VMP1Q96GC9 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.5□□□□□ -1.85
VMP1Q96GC9 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
VMP1Q96GC9 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
VMP1Q96GC9 FAM35BP-202ENST00000497389 3337 ntBASIC3.49□□□□□ -1.85
VMP1Q96GC9 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC3.49□□□□□ -1.85
VMP1Q96GC9 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
VMP1Q96GC9 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC3.49□□□□□ -1.85
VMP1Q96GC9 AL161781.1-201ENST00000354277 403 ntBASIC3.49□□□□□ -1.85
VMP1Q96GC9 U8.11-201ENST00000384699 133 ntBASIC3.49□□□□□ -1.85
VMP1Q96GC9 U8.12-201ENST00000384701 133 ntBASIC3.49□□□□□ -1.85
VMP1Q96GC9 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.49□□□□□ -1.85
VMP1Q96GC9 RNA5SP424-201ENST00000390988 115 ntBASIC3.49□□□□□ -1.85
VMP1Q96GC9 LANCL1-AS1-201ENST00000416344 714 ntTSL 3 BASIC3.49□□□□□ -1.85
VMP1Q96GC9 AC018630.2-202ENST00000422992 927 ntBASIC3.49□□□□□ -1.85
VMP1Q96GC9 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC3.49□□□□□ -1.85
VMP1Q96GC9 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC3.49□□□□□ -1.85
VMP1Q96GC9 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC3.49□□□□□ -1.85
VMP1Q96GC9 FCF1P6-201ENST00000456841 595 ntBASIC3.49□□□□□ -1.85
VMP1Q96GC9 SNORD121B-201ENST00000458838 81 ntBASIC3.49□□□□□ -1.85
VMP1Q96GC9 SNORA84-201ENST00000459229 133 ntBASIC3.49□□□□□ -1.85
VMP1Q96GC9 U8.18-201ENST00000459285 133 ntBASIC3.49□□□□□ -1.85
VMP1Q96GC9 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC3.49□□□□□ -1.85
VMP1Q96GC9 AC147055.4-201ENST00000504399 745 ntBASIC3.49□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 79.5 ms