Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 C11orf40-201ENST00000307616 654 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
HDDC3Q8N4P3 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
HDDC3Q8N4P3 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC3.39□□□□□ -1.87
HDDC3Q8N4P3 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
HDDC3Q8N4P3 RNA5SP38-201ENST00000410750 119 ntBASIC3.39□□□□□ -1.87
HDDC3Q8N4P3 Z99755.1-201ENST00000414048 380 ntBASIC3.39□□□□□ -1.87
HDDC3Q8N4P3 MTATP6P27-201ENST00000416987 621 ntBASIC3.39□□□□□ -1.87
HDDC3Q8N4P3 MRPS36P1-201ENST00000421291 307 ntBASIC3.39□□□□□ -1.87
HDDC3Q8N4P3 HSPE1P1-201ENST00000421494 318 ntBASIC3.39□□□□□ -1.87
HDDC3Q8N4P3 GTF2IP23-201ENST00000423746 351 ntBASIC3.39□□□□□ -1.87
HDDC3Q8N4P3 EZH2P1-201ENST00000431167 291 ntBASIC3.39□□□□□ -1.87
HDDC3Q8N4P3 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC3.39□□□□□ -1.87
HDDC3Q8N4P3 AL357552.1-201ENST00000445254 415 ntBASIC3.39□□□□□ -1.87
HDDC3Q8N4P3 MTCO3P11-201ENST00000455103 774 ntBASIC3.39□□□□□ -1.87
HDDC3Q8N4P3 S100A11P2-201ENST00000467589 312 ntBASIC3.39□□□□□ -1.87
HDDC3Q8N4P3 RPS3AP43-201ENST00000479743 781 ntBASIC3.39□□□□□ -1.87
HDDC3Q8N4P3 AC108734.3-201ENST00000481241 1165 ntBASIC3.39□□□□□ -1.87
HDDC3Q8N4P3 RPS3AP50-201ENST00000487064 803 ntBASIC3.39□□□□□ -1.87
HDDC3Q8N4P3 AC023424.2-201ENST00000493479 777 ntBASIC3.39□□□□□ -1.87
HDDC3Q8N4P3 AC020893.1-201ENST00000502452 580 ntBASIC3.39□□□□□ -1.87
HDDC3Q8N4P3 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC3.39□□□□□ -1.87
HDDC3Q8N4P3 VN1R104P-201ENST00000505115 1009 ntBASIC3.39□□□□□ -1.87
HDDC3Q8N4P3 AC021678.1-201ENST00000505195 936 ntBASIC3.39□□□□□ -1.87
HDDC3Q8N4P3 AC097480.1-201ENST00000509416 712 ntTSL 3 BASIC3.39□□□□□ -1.87
HDDC3Q8N4P3 SNORA31.1-201ENST00000515993 133 ntBASIC3.39□□□□□ -1.87
HDDC3Q8N4P3 SNORA31.5-201ENST00000516190 133 ntBASIC3.39□□□□□ -1.87
HDDC3Q8N4P3 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC3.39□□□□□ -1.87
HDDC3Q8N4P3 FAM60DP-201ENST00000524174 632 ntBASIC3.39□□□□□ -1.87
HDDC3Q8N4P3 CKS1BP3-201ENST00000600888 237 ntBASIC3.39□□□□□ -1.87
HDDC3Q8N4P3 AL133393.1-201ENST00000603277 287 ntBASIC3.39□□□□□ -1.87
HDDC3Q8N4P3 AC080013.4-201ENST00000607624 649 ntBASIC3.39□□□□□ -1.87
HDDC3Q8N4P3 AC097504.2-201ENST00000608088 454 ntBASIC3.39□□□□□ -1.87
HDDC3Q8N4P3 AC092574.1-201ENST00000609771 420 ntBASIC3.39□□□□□ -1.87
HDDC3Q8N4P3 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
HDDC3Q8N4P3 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.39□□□□□ -1.87
HDDC3Q8N4P3 AC010872.1-201ENST00000624225 675 ntBASIC3.39□□□□□ -1.87
HDDC3Q8N4P3 C8orf89-202ENST00000624510 658 ntAPPRIS P2 TSL 3 BASIC3.39□□□□□ -1.87
HDDC3Q8N4P3 AC120349.2-201ENST00000625002 298 ntBASIC3.39□□□□□ -1.87
HDDC3Q8N4P3 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC3.39□□□□□ -1.87
HDDC3Q8N4P3 AL356274.2-201ENST00000624379 3752 ntBASIC3.39□□□□□ -1.87
HDDC3Q8N4P3 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
HDDC3Q8N4P3 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
HDDC3Q8N4P3 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC3.39□□□□□ -1.87
HDDC3Q8N4P3 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
HDDC3Q8N4P3 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC3.38□□□□□ -1.87
HDDC3Q8N4P3 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC3.38□□□□□ -1.87
HDDC3Q8N4P3 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.38□□□□□ -1.87
HDDC3Q8N4P3 AP002907.1-201ENST00000606361 1430 ntBASIC3.38□□□□□ -1.87
HDDC3Q8N4P3 EFTUD1P2-201ENST00000514817 1603 ntBASIC3.38□□□□□ -1.87
HDDC3Q8N4P3 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC3.38□□□□□ -1.87
HDDC3Q8N4P3 OR8K5-201ENST00000313447 924 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
HDDC3Q8N4P3 OR4P4-201ENST00000314612 939 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
HDDC3Q8N4P3 NACA3P-201ENST00000359690 648 ntBASIC3.38□□□□□ -1.87
HDDC3Q8N4P3 CRP-203ENST00000368111 512 ntTSL 3 BASIC3.38□□□□□ -1.87
HDDC3Q8N4P3 RNU6-298P-201ENST00000390888 96 ntBASIC3.38□□□□□ -1.87
HDDC3Q8N4P3 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC3.38□□□□□ -1.87
HDDC3Q8N4P3 HMGN1P24-201ENST00000412282 298 ntBASIC3.38□□□□□ -1.87
HDDC3Q8N4P3 AL161449.1-201ENST00000414531 1199 ntBASIC3.38□□□□□ -1.87
HDDC3Q8N4P3 MRPL50P2-201ENST00000416821 482 ntBASIC3.38□□□□□ -1.87
HDDC3Q8N4P3 AL034347.1-201ENST00000420766 835 ntTSL 3 BASIC3.38□□□□□ -1.87
HDDC3Q8N4P3 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC3.38□□□□□ -1.87
HDDC3Q8N4P3 AC002075.2-201ENST00000425207 252 ntBASIC3.38□□□□□ -1.87
HDDC3Q8N4P3 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC3.38□□□□□ -1.87
HDDC3Q8N4P3 AC022537.1-201ENST00000435271 446 ntTSL 3 BASIC3.38□□□□□ -1.87
HDDC3Q8N4P3 RPL21P8-201ENST00000465083 535 ntBASIC3.38□□□□□ -1.87
HDDC3Q8N4P3 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC3.38□□□□□ -1.87
HDDC3Q8N4P3 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC3.38□□□□□ -1.87
HDDC3Q8N4P3 AC108860.1-201ENST00000484521 383 ntBASIC3.38□□□□□ -1.87
HDDC3Q8N4P3 AC112198.1-201ENST00000505369 1220 ntBASIC3.38□□□□□ -1.87
HDDC3Q8N4P3 MTCYBP16-201ENST00000509187 1129 ntBASIC3.38□□□□□ -1.87
HDDC3Q8N4P3 AC093248.1-201ENST00000513197 417 ntTSL 2 BASIC3.38□□□□□ -1.87
HDDC3Q8N4P3 SNORA70.19-201ENST00000516717 90 ntBASIC3.38□□□□□ -1.87
HDDC3Q8N4P3 AP006245.1-201ENST00000522549 120 ntBASIC3.38□□□□□ -1.87
HDDC3Q8N4P3 OR5AK1P-201ENST00000524837 922 ntBASIC3.38□□□□□ -1.87
HDDC3Q8N4P3 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC3.38□□□□□ -1.87
HDDC3Q8N4P3 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
HDDC3Q8N4P3 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC3.38□□□□□ -1.87
HDDC3Q8N4P3 MIR3186-201ENST00000577404 85 ntBASIC3.38□□□□□ -1.87
HDDC3Q8N4P3 MIR4738-201ENST00000579134 87 ntBASIC3.38□□□□□ -1.87
HDDC3Q8N4P3 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC3.38□□□□□ -1.87
HDDC3Q8N4P3 AC013444.2-201ENST00000603317 787 ntBASIC3.38□□□□□ -1.87
HDDC3Q8N4P3 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC3.38□□□□□ -1.87
HDDC3Q8N4P3 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC3.38□□□□□ -1.87
HDDC3Q8N4P3 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.38□□□□□ -1.87
HDDC3Q8N4P3 AC009237.15-201ENST00000610252 501 ntBASIC3.38□□□□□ -1.87
HDDC3Q8N4P3 AC022149.2-201ENST00000621061 203 ntBASIC3.38□□□□□ -1.87
HDDC3Q8N4P3 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC3.38□□□□□ -1.87
HDDC3Q8N4P3 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.38□□□□□ -1.87
HDDC3Q8N4P3 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC3.38□□□□□ -1.87
HDDC3Q8N4P3 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC3.38□□□□□ -1.87
HDDC3Q8N4P3 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC3.38□□□□□ -1.87
HDDC3Q8N4P3 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
HDDC3Q8N4P3 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
HDDC3Q8N4P3 AC110774.1-201ENST00000623567 2018 ntBASIC3.37□□□□□ -1.87
HDDC3Q8N4P3 AC011460.1-201ENST00000636268 1834 ntBASIC3.37□□□□□ -1.87
HDDC3Q8N4P3 TAB3P1-202ENST00000452645 1634 ntBASIC3.37□□□□□ -1.87
HDDC3Q8N4P3 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
HDDC3Q8N4P3 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC3.37□□□□□ -1.87
HDDC3Q8N4P3 MIR422A-201ENST00000362286 90 ntBASIC3.37□□□□□ -1.87
HDDC3Q8N4P3 MLLT3-201ENST00000380321 708 ntTSL 3 BASIC3.37□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 100 ms