Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
USP39Q53GS9 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC4.63□□□□□ -1.67
USP39Q53GS9 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC4.63□□□□□ -1.67
USP39Q53GS9 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC4.63□□□□□ -1.67
USP39Q53GS9 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
USP39Q53GS9 RNU1-83P-201ENST00000363426 164 ntBASIC4.63□□□□□ -1.67
USP39Q53GS9 Y_RNA.216-201ENST00000364205 93 ntBASIC4.63□□□□□ -1.67
USP39Q53GS9 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC4.63□□□□□ -1.67
USP39Q53GS9 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
USP39Q53GS9 RNU6-657P-201ENST00000383904 107 ntBASIC4.63□□□□□ -1.67
USP39Q53GS9 Y_RNA.474-201ENST00000384341 102 ntBASIC4.63□□□□□ -1.67
USP39Q53GS9 AL354719.1-201ENST00000406535 843 ntBASIC4.63□□□□□ -1.67
USP39Q53GS9 MIR320C1-201ENST00000408566 88 ntBASIC4.63□□□□□ -1.67
USP39Q53GS9 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC4.63□□□□□ -1.67
USP39Q53GS9 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC4.63□□□□□ -1.67
USP39Q53GS9 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC4.63□□□□□ -1.67
USP39Q53GS9 NANOGP6-201ENST00000429190 847 ntBASIC4.63□□□□□ -1.67
USP39Q53GS9 RPL36AP53-201ENST00000432891 316 ntBASIC4.63□□□□□ -1.67
USP39Q53GS9 AC018865.1-201ENST00000433507 578 ntTSL 4 BASIC4.63□□□□□ -1.67
USP39Q53GS9 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC4.63□□□□□ -1.67
USP39Q53GS9 FGF7P3-201ENST00000454645 303 ntBASIC4.63□□□□□ -1.67
USP39Q53GS9 AC016746.1-201ENST00000489557 831 ntTSL 2 BASIC4.63□□□□□ -1.67
USP39Q53GS9 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC4.63□□□□□ -1.67
USP39Q53GS9 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC4.63□□□□□ -1.67
USP39Q53GS9 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC4.63□□□□□ -1.67
USP39Q53GS9 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC4.63□□□□□ -1.67
USP39Q53GS9 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC4.63□□□□□ -1.67
USP39Q53GS9 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC4.63□□□□□ -1.67
USP39Q53GS9 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC4.63□□□□□ -1.67
USP39Q53GS9 AC105129.1-201ENST00000560250 297 ntBASIC4.63□□□□□ -1.67
USP39Q53GS9 AC011824.2-203ENST00000579975 633 ntTSL 3 BASIC4.63□□□□□ -1.67
USP39Q53GS9 AL161734.1-201ENST00000609720 557 ntBASIC4.63□□□□□ -1.67
USP39Q53GS9 AC105429.2-201ENST00000610567 517 ntBASIC4.63□□□□□ -1.67
USP39Q53GS9 AC244472.1-201ENST00000620773 347 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
USP39Q53GS9 AP000843.1-201ENST00000624880 701 ntBASIC4.63□□□□□ -1.67
USP39Q53GS9 SRP54-214ENST00000630962 162 ntTSL 5 BASIC4.63□□□□□ -1.67
USP39Q53GS9 AC134503.1-201ENST00000633048 54 ntBASIC4.63□□□□□ -1.67
USP39Q53GS9 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC4.63□□□□□ -1.67
USP39Q53GS9 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC4.63□□□□□ -1.67
USP39Q53GS9 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC4.63□□□□□ -1.67
USP39Q53GS9 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC4.63□□□□□ -1.67
USP39Q53GS9 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC4.63□□□□□ -1.67
USP39Q53GS9 ERCC6-202ENST00000374127 1782 ntBASIC4.63□□□□□ -1.67
USP39Q53GS9 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC4.63□□□□□ -1.67
USP39Q53GS9 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC4.63□□□□□ -1.67
USP39Q53GS9 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC4.63□□□□□ -1.67
USP39Q53GS9 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC4.62□□□□□ -1.67
USP39Q53GS9 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
USP39Q53GS9 AC027290.2-201ENST00000623210 18662 ntBASIC4.62□□□□□ -1.67
USP39Q53GS9 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
USP39Q53GS9 AC021146.4-201ENST00000309229 279 ntBASIC4.62□□□□□ -1.67
USP39Q53GS9 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
USP39Q53GS9 Y_RNA.144-201ENST00000363521 113 ntBASIC4.62□□□□□ -1.67
USP39Q53GS9 RNA5SP28-201ENST00000363841 119 ntBASIC4.62□□□□□ -1.67
USP39Q53GS9 RNU6-289P-201ENST00000364093 107 ntBASIC4.62□□□□□ -1.67
USP39Q53GS9 SNORA69-201ENST00000383895 132 ntBASIC4.62□□□□□ -1.67
USP39Q53GS9 RNU6-74P-201ENST00000384235 107 ntBASIC4.62□□□□□ -1.67
USP39Q53GS9 RPL32P23-201ENST00000397237 405 ntBASIC4.62□□□□□ -1.67
USP39Q53GS9 RNU6-1068P-201ENST00000410958 103 ntBASIC4.62□□□□□ -1.67
USP39Q53GS9 RNU6-1148P-201ENST00000410992 104 ntBASIC4.62□□□□□ -1.67
USP39Q53GS9 RPL35AP12-201ENST00000425362 338 ntBASIC4.62□□□□□ -1.67
USP39Q53GS9 RPS12P10-201ENST00000427031 377 ntBASIC4.62□□□□□ -1.67
USP39Q53GS9 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC4.62□□□□□ -1.67
USP39Q53GS9 AL606489.2-201ENST00000433886 234 ntBASIC4.62□□□□□ -1.67
USP39Q53GS9 MTND3P2-201ENST00000438452 342 ntBASIC4.62□□□□□ -1.67
USP39Q53GS9 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC4.62□□□□□ -1.67
USP39Q53GS9 TDGF1P1-201ENST00000445734 527 ntBASIC4.62□□□□□ -1.67
USP39Q53GS9 RPL7P12-201ENST00000446719 750 ntBASIC4.62□□□□□ -1.67
USP39Q53GS9 NDUFA5P7-201ENST00000452914 242 ntBASIC4.62□□□□□ -1.67
USP39Q53GS9 Y_RNA.632-201ENST00000459189 102 ntBASIC4.62□□□□□ -1.67
USP39Q53GS9 RPS3AP50-201ENST00000487064 803 ntBASIC4.62□□□□□ -1.67
USP39Q53GS9 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC4.62□□□□□ -1.67
USP39Q53GS9 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC4.62□□□□□ -1.67
USP39Q53GS9 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC4.62□□□□□ -1.67
USP39Q53GS9 MRPL49P2-201ENST00000521066 465 ntBASIC4.62□□□□□ -1.67
USP39Q53GS9 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC4.62□□□□□ -1.67
USP39Q53GS9 AC023050.3-201ENST00000541142 333 ntBASIC4.62□□□□□ -1.67
USP39Q53GS9 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
USP39Q53GS9 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC4.62□□□□□ -1.67
USP39Q53GS9 DYNLL1P4-201ENST00000549314 266 ntBASIC4.62□□□□□ -1.67
USP39Q53GS9 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC4.62□□□□□ -1.67
USP39Q53GS9 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC4.62□□□□□ -1.67
USP39Q53GS9 MIR3171-201ENST00000584270 74 ntBASIC4.62□□□□□ -1.67
USP39Q53GS9 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC4.62□□□□□ -1.67
USP39Q53GS9 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC4.62□□□□□ -1.67
USP39Q53GS9 AC008638.3-201ENST00000603341 463 ntBASIC4.62□□□□□ -1.67
USP39Q53GS9 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC4.62□□□□□ -1.67
USP39Q53GS9 RNU6-87P-201ENST00000607561 108 ntBASIC4.62□□□□□ -1.67
USP39Q53GS9 AL355802.3-201ENST00000607571 545 ntBASIC4.62□□□□□ -1.67
USP39Q53GS9 AL445567.2-201ENST00000618935 498 ntBASIC4.62□□□□□ -1.67
USP39Q53GS9 AC100810.6-201ENST00000638068 285 ntBASIC4.62□□□□□ -1.67
USP39Q53GS9 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC4.62□□□□□ -1.67
USP39Q53GS9 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC4.62□□□□□ -1.67
USP39Q53GS9 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
USP39Q53GS9 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC4.62□□□□□ -1.67
USP39Q53GS9 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
USP39Q53GS9 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
USP39Q53GS9 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
USP39Q53GS9 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC4.61□□□□□ -1.67
USP39Q53GS9 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC4.61□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 143.6 ms