Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC073530.1-202ENST00000538008 508 ntTSL 2 BASIC3.83□□□□□ -1.8
COL28A1Q2UY09 AC135001.1-201ENST00000544546 283 ntBASIC3.83□□□□□ -1.8
COL28A1Q2UY09 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC3.83□□□□□ -1.8
COL28A1Q2UY09 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC3.83□□□□□ -1.8
COL28A1Q2UY09 ROCK1P1-201ENST00000573767 549 ntBASIC3.83□□□□□ -1.8
COL28A1Q2UY09 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC3.83□□□□□ -1.8
COL28A1Q2UY09 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
COL28A1Q2UY09 MIR544B-201ENST00000582372 78 ntBASIC3.83□□□□□ -1.8
COL28A1Q2UY09 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC3.83□□□□□ -1.8
COL28A1Q2UY09 BCRP9-201ENST00000605312 388 ntBASIC3.83□□□□□ -1.8
COL28A1Q2UY09 HMGN2P28-201ENST00000606102 262 ntBASIC3.83□□□□□ -1.8
COL28A1Q2UY09 AC012360.2-201ENST00000609349 391 ntBASIC3.83□□□□□ -1.8
COL28A1Q2UY09 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC3.83□□□□□ -1.8
COL28A1Q2UY09 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC3.83□□□□□ -1.8
COL28A1Q2UY09 MTND4P16-201ENST00000466108 1367 ntBASIC3.83□□□□□ -1.8
COL28A1Q2UY09 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
COL28A1Q2UY09 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC3.83□□□□□ -1.8
COL28A1Q2UY09 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC3.83□□□□□ -1.8
COL28A1Q2UY09 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC3.83□□□□□ -1.8
COL28A1Q2UY09 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC3.82□□□□□ -1.8
COL28A1Q2UY09 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
COL28A1Q2UY09 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC3.82□□□□□ -1.8
COL28A1Q2UY09 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC3.82□□□□□ -1.8
COL28A1Q2UY09 Z82217.1-201ENST00000625157 8149 ntBASIC3.82□□□□□ -1.8
COL28A1Q2UY09 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
COL28A1Q2UY09 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
COL28A1Q2UY09 AL513185.3-201ENST00000433335 1300 ntBASIC3.82□□□□□ -1.8
COL28A1Q2UY09 RNY4P24-201ENST00000362735 96 ntBASIC3.82□□□□□ -1.8
COL28A1Q2UY09 Y_RNA.77-201ENST00000362962 107 ntBASIC3.82□□□□□ -1.8
COL28A1Q2UY09 Y_RNA.97-201ENST00000363094 102 ntBASIC3.82□□□□□ -1.8
COL28A1Q2UY09 RNA5SP267-201ENST00000364893 126 ntBASIC3.82□□□□□ -1.8
COL28A1Q2UY09 RNU6-769P-201ENST00000384407 104 ntBASIC3.82□□□□□ -1.8
COL28A1Q2UY09 RNU4-78P-201ENST00000410940 126 ntBASIC3.82□□□□□ -1.8
COL28A1Q2UY09 AC104653.1-201ENST00000420579 578 ntTSL 2 BASIC3.82□□□□□ -1.8
COL28A1Q2UY09 TBCAP1-201ENST00000436520 327 ntBASIC3.82□□□□□ -1.8
COL28A1Q2UY09 USP9YP7-201ENST00000436723 430 ntBASIC3.82□□□□□ -1.8
COL28A1Q2UY09 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC3.82□□□□□ -1.8
COL28A1Q2UY09 BMI1P1-201ENST00000445879 941 ntBASIC3.82□□□□□ -1.8
COL28A1Q2UY09 RPL36AP33-201ENST00000450395 310 ntBASIC3.82□□□□□ -1.8
COL28A1Q2UY09 USP9YP32-201ENST00000452432 430 ntBASIC3.82□□□□□ -1.8
COL28A1Q2UY09 ASH1L-IT1-201ENST00000458371 448 ntTSL 5 BASIC3.82□□□□□ -1.8
COL28A1Q2UY09 ST13P14-201ENST00000474095 734 ntBASIC3.82□□□□□ -1.8
COL28A1Q2UY09 HMGB1P36-201ENST00000487709 576 ntBASIC3.82□□□□□ -1.8
COL28A1Q2UY09 AC034222.1-201ENST00000494052 532 ntBASIC3.82□□□□□ -1.8
COL28A1Q2UY09 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC3.82□□□□□ -1.8
COL28A1Q2UY09 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC3.82□□□□□ -1.8
COL28A1Q2UY09 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC3.82□□□□□ -1.8
COL28A1Q2UY09 RNU6-714P-201ENST00000516963 103 ntBASIC3.82□□□□□ -1.8
COL28A1Q2UY09 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC3.82□□□□□ -1.8
COL28A1Q2UY09 OR4P1P-201ENST00000530808 1136 ntBASIC3.82□□□□□ -1.8
COL28A1Q2UY09 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC3.82□□□□□ -1.8
COL28A1Q2UY09 AC063950.1-201ENST00000552036 308 ntBASIC3.82□□□□□ -1.8
COL28A1Q2UY09 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC3.82□□□□□ -1.8
COL28A1Q2UY09 AP005205.1-201ENST00000563503 508 ntBASIC3.82□□□□□ -1.8
COL28A1Q2UY09 ACTR3BP3-201ENST00000565577 979 ntBASIC3.82□□□□□ -1.8
COL28A1Q2UY09 AC091489.2-201ENST00000566263 604 ntBASIC3.82□□□□□ -1.8
COL28A1Q2UY09 AC007610.2-201ENST00000566770 666 ntTSL 3 BASIC3.82□□□□□ -1.8
COL28A1Q2UY09 AC009101.1-201ENST00000568135 242 ntBASIC3.82□□□□□ -1.8
COL28A1Q2UY09 MIR4644-201ENST00000579929 84 ntBASIC3.82□□□□□ -1.8
COL28A1Q2UY09 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC3.82□□□□□ -1.8
COL28A1Q2UY09 NBR2-204ENST00000587322 63 ntBASIC3.82□□□□□ -1.8
COL28A1Q2UY09 BNIP3P23-201ENST00000599655 511 ntBASIC3.82□□□□□ -1.8
COL28A1Q2UY09 AC015726.1-201ENST00000602353 681 ntBASIC3.82□□□□□ -1.8
COL28A1Q2UY09 AL022161.1-201ENST00000604390 213 ntBASIC3.82□□□□□ -1.8
COL28A1Q2UY09 AC011816.2-201ENST00000607089 556 ntBASIC3.82□□□□□ -1.8
COL28A1Q2UY09 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC3.82□□□□□ -1.8
COL28A1Q2UY09 MIR7151-201ENST00000617477 60 ntBASIC3.82□□□□□ -1.8
COL28A1Q2UY09 ZNF962P-201ENST00000443465 3140 ntBASIC3.82□□□□□ -1.8
COL28A1Q2UY09 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
COL28A1Q2UY09 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC3.82□□□□□ -1.8
COL28A1Q2UY09 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC3.82□□□□□ -1.8
COL28A1Q2UY09 SPATA31D2P-201ENST00000429999 4388 ntBASIC3.81□□□□□ -1.8
COL28A1Q2UY09 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
COL28A1Q2UY09 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC3.81□□□□□ -1.8
COL28A1Q2UY09 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
COL28A1Q2UY09 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
COL28A1Q2UY09 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
COL28A1Q2UY09 AP004289.2-201ENST00000444413 1457 ntBASIC3.81□□□□□ -1.8
COL28A1Q2UY09 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
COL28A1Q2UY09 AC020637.1-201ENST00000546977 1447 ntTSL 5 BASIC3.81□□□□□ -1.8
COL28A1Q2UY09 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC3.81□□□□□ -1.8
COL28A1Q2UY09 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC3.81□□□□□ -1.8
COL28A1Q2UY09 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
COL28A1Q2UY09 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC3.81□□□□□ -1.8
COL28A1Q2UY09 MIR423-201ENST00000362201 94 ntBASIC3.81□□□□□ -1.8
COL28A1Q2UY09 RNU4-21P-201ENST00000362802 126 ntBASIC3.81□□□□□ -1.8
COL28A1Q2UY09 RNU6-1249P-201ENST00000363237 111 ntBASIC3.81□□□□□ -1.8
COL28A1Q2UY09 CRP-202ENST00000368110 667 ntTSL 3 BASIC3.81□□□□□ -1.8
COL28A1Q2UY09 SNORD3H-201ENST00000384486 214 ntBASIC3.81□□□□□ -1.8
COL28A1Q2UY09 SNORA26.8-201ENST00000391306 124 ntBASIC3.81□□□□□ -1.8
COL28A1Q2UY09 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC3.81□□□□□ -1.8
COL28A1Q2UY09 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC3.81□□□□□ -1.8
COL28A1Q2UY09 PGBD4P8-201ENST00000412993 562 ntBASIC3.81□□□□□ -1.8
COL28A1Q2UY09 EI24P1-201ENST00000416584 867 ntBASIC3.81□□□□□ -1.8
COL28A1Q2UY09 SEPT2P1-201ENST00000419651 180 ntBASIC3.81□□□□□ -1.8
COL28A1Q2UY09 AL035423.1-201ENST00000420331 213 ntBASIC3.81□□□□□ -1.8
COL28A1Q2UY09 AL158156.1-201ENST00000422509 473 ntBASIC3.81□□□□□ -1.8
COL28A1Q2UY09 AL513174.1-201ENST00000423182 629 ntBASIC3.81□□□□□ -1.8
COL28A1Q2UY09 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC3.81□□□□□ -1.8
COL28A1Q2UY09 AL445669.1-201ENST00000426743 755 ntBASIC3.81□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 82 ms