Protein–RNA interactions for Protein: Q12948

FOXC1, Forkhead box protein C1, humanhuman

Predictions only

Length 553 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXC1Q12948 AC025470.1-201ENST00000510053 2032 ntBASIC5.71□□□□□ -1.5
FOXC1Q12948 AMY1B-202ENST00000370080 1787 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.5
FOXC1Q12948 LRRC37A3-202ENST00000334962 2654 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
FOXC1Q12948 TRIM64-201ENST00000533122 2691 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
FOXC1Q12948 RNU1-130P-201ENST00000363930 160 ntBASIC5.71□□□□□ -1.5
FOXC1Q12948 Y_RNA.309-201ENST00000365046 111 ntBASIC5.71□□□□□ -1.5
FOXC1Q12948 Y_RNA.405-201ENST00000383979 100 ntBASIC5.71□□□□□ -1.5
FOXC1Q12948 Y_RNA.451-201ENST00000384200 100 ntBASIC5.71□□□□□ -1.5
FOXC1Q12948 Y_RNA.524-201ENST00000384564 100 ntBASIC5.71□□□□□ -1.5
FOXC1Q12948 Y_RNA.561-201ENST00000384694 100 ntBASIC5.71□□□□□ -1.5
FOXC1Q12948 Y_RNA.563-201ENST00000384707 108 ntBASIC5.71□□□□□ -1.5
FOXC1Q12948 Y_RNA.571-201ENST00000384753 98 ntBASIC5.71□□□□□ -1.5
FOXC1Q12948 RPL23AP26-201ENST00000412728 464 ntBASIC5.71□□□□□ -1.5
FOXC1Q12948 CYCSP52-201ENST00000422857 310 ntBASIC5.71□□□□□ -1.5
FOXC1Q12948 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
FOXC1Q12948 FTH1P10-202ENST00000430907 550 ntBASIC5.71□□□□□ -1.5
FOXC1Q12948 AC004938.1-201ENST00000438468 308 ntBASIC5.71□□□□□ -1.5
FOXC1Q12948 AC006466.1-201ENST00000438721 289 ntBASIC5.71□□□□□ -1.5
FOXC1Q12948 AL161629.1-201ENST00000446201 457 ntTSL 3 BASIC5.71□□□□□ -1.5
FOXC1Q12948 UQCRBP2-201ENST00000447827 297 ntBASIC5.71□□□□□ -1.5
FOXC1Q12948 AC234775.1-201ENST00000454247 670 ntBASIC5.71□□□□□ -1.5
FOXC1Q12948 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
FOXC1Q12948 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
FOXC1Q12948 RN7SL97P-201ENST00000486780 299 ntBASIC5.71□□□□□ -1.5
FOXC1Q12948 AL160314.1-201ENST00000490836 438 ntBASIC5.71□□□□□ -1.5
FOXC1Q12948 AC020659.1-204ENST00000562920 400 ntTSL 3 BASIC5.71□□□□□ -1.5
FOXC1Q12948 RN7SL652P-201ENST00000577769 300 ntBASIC5.71□□□□□ -1.5
FOXC1Q12948 IGLCOR22-2-201ENST00000605398 313 ntBASIC5.71□□□□□ -1.5
FOXC1Q12948 MIR15A-201ENST00000607334 83 ntBASIC5.71□□□□□ -1.5
FOXC1Q12948 AL355816.1-201ENST00000607951 118 ntBASIC5.71□□□□□ -1.5
FOXC1Q12948 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC5.71□□□□□ -1.5
FOXC1Q12948 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.5
FOXC1Q12948 AC083843.3-201ENST00000623679 2186 ntBASIC5.71□□□□□ -1.5
FOXC1Q12948 HPS5-205ENST00000438420 4147 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
FOXC1Q12948 ZMYM4-201ENST00000314607 6994 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.5
FOXC1Q12948 NBPF9-205ENST00000613595 4527 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
FOXC1Q12948 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC5.71□□□□□ -1.5
FOXC1Q12948 C9-201ENST00000263408 2713 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
FOXC1Q12948 SRSF3-202ENST00000373715 4222 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
FOXC1Q12948 PCDH18-203ENST00000507846 4625 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
FOXC1Q12948 ZSCAN5A-201ENST00000391713 3562 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.5
FOXC1Q12948 TRIQK-206ENST00000518748 3563 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
FOXC1Q12948 KLHL5-205ENST00000508137 2926 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
FOXC1Q12948 CACNA1E-204ENST00000367567 14757 ntAPPRIS ALT2 TSL 5 BASIC5.71□□□□□ -1.5
FOXC1Q12948 DMXL1-215ENST00000539542 11236 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
FOXC1Q12948 C15orf54-202ENST00000625107 3078 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
FOXC1Q12948 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC5.71□□□□□ -1.5
FOXC1Q12948 DCTN5-201ENST00000300087 11011 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
FOXC1Q12948 OR3A3-203ENST00000641141 3800 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
FOXC1Q12948 ARMCX5-202ENST00000372742 2647 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
FOXC1Q12948 AL021877.2-201ENST00000624442 10684 ntBASIC5.7□□□□□ -1.5
FOXC1Q12948 AC079601.1-201ENST00000547824 2791 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
FOXC1Q12948 AC104162.1-201ENST00000430831 2382 ntBASIC5.7□□□□□ -1.5
FOXC1Q12948 FBXL17-203ENST00000496714 3773 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
FOXC1Q12948 AC025809.2-201ENST00000625085 1802 ntBASIC5.7□□□□□ -1.5
FOXC1Q12948 Y_RNA.23-201ENST00000362496 106 ntBASIC5.7□□□□□ -1.5
FOXC1Q12948 RNU6-1301P-201ENST00000362724 104 ntBASIC5.7□□□□□ -1.5
FOXC1Q12948 RNU6-653P-201ENST00000363074 106 ntBASIC5.7□□□□□ -1.5
FOXC1Q12948 RNU6-1243P-201ENST00000364028 107 ntBASIC5.7□□□□□ -1.5
FOXC1Q12948 RNU6-755P-201ENST00000364400 103 ntBASIC5.7□□□□□ -1.5
FOXC1Q12948 Y_RNA.262-201ENST00000364641 102 ntBASIC5.7□□□□□ -1.5
FOXC1Q12948 Y_RNA.324-201ENST00000365165 102 ntBASIC5.7□□□□□ -1.5
FOXC1Q12948 RNU6-429P-201ENST00000384582 108 ntBASIC5.7□□□□□ -1.5
FOXC1Q12948 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
FOXC1Q12948 AL357139.1-201ENST00000407792 426 ntBASIC5.7□□□□□ -1.5
FOXC1Q12948 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC5.7□□□□□ -1.5
FOXC1Q12948 AL133173.1-201ENST00000423458 397 ntBASIC5.7□□□□□ -1.5
FOXC1Q12948 MTATP6P4-201ENST00000427725 675 ntBASIC5.7□□□□□ -1.5
FOXC1Q12948 RPL7L1P9-201ENST00000431298 745 ntBASIC5.7□□□□□ -1.5
FOXC1Q12948 AC010733.1-201ENST00000451515 401 ntBASIC5.7□□□□□ -1.5
FOXC1Q12948 AC022795.1-201ENST00000473808 480 ntBASIC5.7□□□□□ -1.5
FOXC1Q12948 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC5.7□□□□□ -1.5
FOXC1Q12948 AC072052.1-201ENST00000496556 306 ntBASIC5.7□□□□□ -1.5
FOXC1Q12948 ANXA2P1-201ENST00000505539 926 ntBASIC5.7□□□□□ -1.5
FOXC1Q12948 AC005823.2-201ENST00000505978 650 ntTSL 3 BASIC5.7□□□□□ -1.5
FOXC1Q12948 AP001992.1-201ENST00000533875 723 ntTSL 5 BASIC5.7□□□□□ -1.5
FOXC1Q12948 TGIF1P1-201ENST00000558095 802 ntBASIC5.7□□□□□ -1.5
FOXC1Q12948 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC5.7□□□□□ -1.5
FOXC1Q12948 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC5.7□□□□□ -1.5
FOXC1Q12948 MIR4423-201ENST00000580922 80 ntBASIC5.7□□□□□ -1.5
FOXC1Q12948 MIR4697-201ENST00000582977 78 ntBASIC5.7□□□□□ -1.5
FOXC1Q12948 AC067852.4-201ENST00000590314 478 ntBASIC5.7□□□□□ -1.5
FOXC1Q12948 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC5.7□□□□□ -1.5
FOXC1Q12948 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC5.7□□□□□ -1.5
FOXC1Q12948 ANKRD44-201ENST00000282272 5147 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
FOXC1Q12948 CBR4-201ENST00000306193 3443 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
FOXC1Q12948 CDH2-202ENST00000399380 3737 ntTSL 2 BASIC5.7□□□□□ -1.5
FOXC1Q12948 PRRC1-204ENST00000512635 2726 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
FOXC1Q12948 EPG5-201ENST00000282041 12633 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
FOXC1Q12948 EIF4G2-208ENST00000526148 4001 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
FOXC1Q12948 SORBS1-203ENST00000354106 3015 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
FOXC1Q12948 PDGFRA-201ENST00000257290 6576 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
FOXC1Q12948 EOGT-201ENST00000295571 4138 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
FOXC1Q12948 OR11G2-203ENST00000641879 4415 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
FOXC1Q12948 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
FOXC1Q12948 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC5.7□□□□□ -1.5
FOXC1Q12948 NF1-202ENST00000358273 12425 ntAPPRIS ALT1 TSL 1 (best) BASIC5.7□□□□□ -1.5
FOXC1Q12948 SDAD1-203ENST00000395711 2513 ntTSL 2 BASIC5.7□□□□□ -1.5
FOXC1Q12948 MKKS-202ENST00000399054 2663 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
FOXC1Q12948 NBPF26-204ENST00000615145 2656 ntTSL 5 BASIC5.7□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 89.3 ms