Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 RN7SKP40-201ENST00000517211 242 ntBASIC1.41□□□□□ -2.18
COL7A1Q02388 AP001207.1-201ENST00000524051 481 ntBASIC1.41□□□□□ -2.18
COL7A1Q02388 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC1.41□□□□□ -2.18
COL7A1Q02388 AC025260.1-201ENST00000548858 430 ntBASIC1.41□□□□□ -2.18
COL7A1Q02388 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC1.41□□□□□ -2.18
COL7A1Q02388 ZFAND6-208ENST00000558688 780 ntTSL 2 BASIC1.41□□□□□ -2.18
COL7A1Q02388 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.41□□□□□ -2.18
COL7A1Q02388 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC1.41□□□□□ -2.18
COL7A1Q02388 MTND5P3-201ENST00000438536 1800 ntBASIC1.41□□□□□ -2.18
COL7A1Q02388 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC1.41□□□□□ -2.18
COL7A1Q02388 OR8K1-201ENST00000279783 1087 ntAPPRIS P1 BASIC1.41□□□□□ -2.18
COL7A1Q02388 DEFB122-201ENST00000433453 499 ntTSL 1 (best) BASIC1.41□□□□□ -2.18
COL7A1Q02388 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC1.41□□□□□ -2.18
COL7A1Q02388 AC112496.1-201ENST00000497961 562 ntTSL 5 BASIC1.41□□□□□ -2.18
COL7A1Q02388 AC112695.1-201ENST00000504213 592 ntTSL 2 BASIC1.41□□□□□ -2.18
COL7A1Q02388 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC1.41□□□□□ -2.18
COL7A1Q02388 HMGB3P26-201ENST00000560051 582 ntBASIC1.41□□□□□ -2.18
COL7A1Q02388 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.41□□□□□ -2.18
COL7A1Q02388 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC1.41□□□□□ -2.18
COL7A1Q02388 AC084768.2-201ENST00000622736 221 ntBASIC1.41□□□□□ -2.18
COL7A1Q02388 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC1.41□□□□□ -2.18
COL7A1Q02388 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC1.41□□□□□ -2.18
COL7A1Q02388 CCDC169-203ENST00000379862 624 ntTSL 5 BASIC1.4□□□□□ -2.18
COL7A1Q02388 AL023807.1-201ENST00000407932 359 ntBASIC1.4□□□□□ -2.18
COL7A1Q02388 AL358453.1-201ENST00000422522 250 ntBASIC1.4□□□□□ -2.18
COL7A1Q02388 UBE2V1P5-201ENST00000440070 405 ntBASIC1.4□□□□□ -2.18
COL7A1Q02388 SSXP1-201ENST00000453640 473 ntBASIC1.4□□□□□ -2.18
COL7A1Q02388 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC1.4□□□□□ -2.18
COL7A1Q02388 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC1.4□□□□□ -2.18
COL7A1Q02388 AC068790.3-201ENST00000602988 553 ntBASIC1.4□□□□□ -2.18
COL7A1Q02388 AC025048.6-202ENST00000627667 438 ntBASIC1.4□□□□□ -2.18
COL7A1Q02388 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC1.4□□□□□ -2.18
COL7A1Q02388 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC1.4□□□□□ -2.18
COL7A1Q02388 ZNF355P-201ENST00000427301 3216 ntBASIC1.4□□□□□ -2.19
COL7A1Q02388 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC1.4□□□□□ -2.19
COL7A1Q02388 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC1.4□□□□□ -2.19
COL7A1Q02388 XPOTP1-201ENST00000443317 2398 ntBASIC1.4□□□□□ -2.19
COL7A1Q02388 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC1.4□□□□□ -2.19
COL7A1Q02388 Y_RNA.458-201ENST00000384240 102 ntBASIC1.4□□□□□ -2.19
COL7A1Q02388 SAR1AP2-201ENST00000392696 594 ntBASIC1.4□□□□□ -2.19
COL7A1Q02388 RNU6ATAC40P-201ENST00000408580 137 ntBASIC1.4□□□□□ -2.19
COL7A1Q02388 RNA5SP38-201ENST00000410750 119 ntBASIC1.4□□□□□ -2.19
COL7A1Q02388 AL513321.1-201ENST00000441175 761 ntBASIC1.4□□□□□ -2.19
COL7A1Q02388 AL162388.1-201ENST00000450912 352 ntBASIC1.4□□□□□ -2.19
COL7A1Q02388 GZMAP1-201ENST00000503054 631 ntBASIC1.4□□□□□ -2.19
COL7A1Q02388 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC1.4□□□□□ -2.19
COL7A1Q02388 RNA5SP102-201ENST00000516865 106 ntBASIC1.4□□□□□ -2.19
COL7A1Q02388 AP005660.1-201ENST00000522972 293 ntBASIC1.4□□□□□ -2.19
COL7A1Q02388 ZDHHC20P3-201ENST00000531576 336 ntBASIC1.4□□□□□ -2.19
COL7A1Q02388 AC234775.3-201ENST00000564612 656 ntBASIC1.4□□□□□ -2.19
COL7A1Q02388 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC1.4□□□□□ -2.19
COL7A1Q02388 AC244517.12-201ENST00000623581 663 ntBASIC1.4□□□□□ -2.19
COL7A1Q02388 LRRC77P-213ENST00000637727 880 ntBASIC1.4□□□□□ -2.19
COL7A1Q02388 AC006378.2-201ENST00000623178 2476 ntBASIC1.4□□□□□ -2.19
COL7A1Q02388 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.4□□□□□ -2.19
COL7A1Q02388 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC1.4□□□□□ -2.19
COL7A1Q02388 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC1.39□□□□□ -2.19
COL7A1Q02388 RN7SKP123-201ENST00000410732 291 ntBASIC1.39□□□□□ -2.19
COL7A1Q02388 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.39□□□□□ -2.19
COL7A1Q02388 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC1.39□□□□□ -2.19
COL7A1Q02388 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC1.39□□□□□ -2.19
COL7A1Q02388 RNU1-123P-201ENST00000458950 160 ntBASIC1.39□□□□□ -2.19
COL7A1Q02388 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC1.39□□□□□ -2.19
COL7A1Q02388 LINC02399-201ENST00000547094 400 ntTSL 2 BASIC1.39□□□□□ -2.19
COL7A1Q02388 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC1.39□□□□□ -2.19
COL7A1Q02388 PSMG2-204ENST00000585331 983 ntTSL 1 (best) BASIC1.39□□□□□ -2.19
COL7A1Q02388 RPAP2P1-201ENST00000603626 1168 ntBASIC1.39□□□□□ -2.19
COL7A1Q02388 AP006248.2-201ENST00000623309 592 ntBASIC1.39□□□□□ -2.19
COL7A1Q02388 RNU1-138P-201ENST00000384093 164 ntBASIC1.39□□□□□ -2.19
COL7A1Q02388 GSTA12P-201ENST00000402398 508 ntBASIC1.39□□□□□ -2.19
COL7A1Q02388 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC1.39□□□□□ -2.19
COL7A1Q02388 AL358075.3-201ENST00000426289 226 ntBASIC1.39□□□□□ -2.19
COL7A1Q02388 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC1.39□□□□□ -2.19
COL7A1Q02388 AC107015.1-201ENST00000466902 747 ntBASIC1.39□□□□□ -2.19
COL7A1Q02388 AC011352.3-201ENST00000505162 593 ntBASIC1.39□□□□□ -2.19
COL7A1Q02388 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC1.39□□□□□ -2.19
COL7A1Q02388 NF1P5-201ENST00000588287 448 ntBASIC1.39□□□□□ -2.19
COL7A1Q02388 AC023043.3-201ENST00000593113 385 ntBASIC1.39□□□□□ -2.19
COL7A1Q02388 AC069234.5-201ENST00000611056 416 ntBASIC1.39□□□□□ -2.19
COL7A1Q02388 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC1.39□□□□□ -2.19
COL7A1Q02388 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC1.39□□□□□ -2.19
COL7A1Q02388 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC1.39□□□□□ -2.19
COL7A1Q02388 DCAF13P1-201ENST00000495256 1330 ntBASIC1.39□□□□□ -2.19
COL7A1Q02388 AL450326.2-201ENST00000421913 1962 ntBASIC1.39□□□□□ -2.19
COL7A1Q02388 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC1.39□□□□□ -2.19
COL7A1Q02388 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC1.39□□□□□ -2.19
COL7A1Q02388 AC008173.1-201ENST00000418901 264 ntBASIC1.39□□□□□ -2.19
COL7A1Q02388 LINC01878-201ENST00000434559 769 ntTSL 3 BASIC1.39□□□□□ -2.19
COL7A1Q02388 TOMM22P6-201ENST00000465035 409 ntBASIC1.39□□□□□ -2.19
COL7A1Q02388 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC1.39□□□□□ -2.19
COL7A1Q02388 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC1.39□□□□□ -2.19
COL7A1Q02388 AC011604.1-201ENST00000545978 196 ntBASIC1.39□□□□□ -2.19
COL7A1Q02388 VN1R79P-201ENST00000593540 513 ntBASIC1.39□□□□□ -2.19
COL7A1Q02388 AL160394.1-201ENST00000624765 724 ntBASIC1.39□□□□□ -2.19
COL7A1Q02388 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.38□□□□□ -2.19
COL7A1Q02388 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC1.38□□□□□ -2.19
COL7A1Q02388 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC1.38□□□□□ -2.19
COL7A1Q02388 YWHAZP7-201ENST00000436906 631 ntBASIC1.38□□□□□ -2.19
COL7A1Q02388 AP000852.1-201ENST00000472460 573 ntBASIC1.38□□□□□ -2.19
COL7A1Q02388 ARL4AP2-201ENST00000507378 601 ntBASIC1.38□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 131.6 ms