Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
LIG3P49916 IARS-201ENST00000375627 697 ntTSL 3 BASIC5.29□□□□□ -1.56
LIG3P49916 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
LIG3P49916 RNU4-46P-201ENST00000410818 138 ntBASIC5.29□□□□□ -1.56
LIG3P49916 RNU6-387P-201ENST00000411331 105 ntBASIC5.29□□□□□ -1.56
LIG3P49916 RPL21P24-201ENST00000413752 448 ntBASIC5.29□□□□□ -1.56
LIG3P49916 AC114491.1-201ENST00000416095 246 ntBASIC5.29□□□□□ -1.56
LIG3P49916 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC5.29□□□□□ -1.56
LIG3P49916 ZDHHC20P1-204ENST00000435787 423 ntBASIC5.29□□□□□ -1.56
LIG3P49916 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC5.29□□□□□ -1.56
LIG3P49916 TPT1P13-201ENST00000449760 499 ntBASIC5.29□□□□□ -1.56
LIG3P49916 AL389915.2-201ENST00000454576 441 ntBASIC5.29□□□□□ -1.56
LIG3P49916 AC007967.1-201ENST00000455422 1159 ntBASIC5.29□□□□□ -1.56
LIG3P49916 Z92846.1-201ENST00000456203 268 ntBASIC5.29□□□□□ -1.56
LIG3P49916 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC5.29□□□□□ -1.56
LIG3P49916 RNU7-66P-201ENST00000459469 62 ntBASIC5.29□□□□□ -1.56
LIG3P49916 HMGB1P25-201ENST00000468402 607 ntBASIC5.29□□□□□ -1.56
LIG3P49916 LINC01206-203ENST00000476815 482 ntTSL 3 BASIC5.29□□□□□ -1.56
LIG3P49916 AC083904.1-201ENST00000487828 231 ntBASIC5.29□□□□□ -1.56
LIG3P49916 AC004453.1-201ENST00000487895 408 ntBASIC5.29□□□□□ -1.56
LIG3P49916 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC5.29□□□□□ -1.56
LIG3P49916 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC5.29□□□□□ -1.56
LIG3P49916 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC5.29□□□□□ -1.56
LIG3P49916 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC5.29□□□□□ -1.56
LIG3P49916 AC100870.1-201ENST00000522035 505 ntBASIC5.29□□□□□ -1.56
LIG3P49916 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC5.29□□□□□ -1.56
LIG3P49916 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC5.29□□□□□ -1.56
LIG3P49916 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC5.29□□□□□ -1.56
LIG3P49916 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC5.29□□□□□ -1.56
LIG3P49916 RN7SL176P-201ENST00000580352 264 ntBASIC5.29□□□□□ -1.56
LIG3P49916 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC5.29□□□□□ -1.56
LIG3P49916 AP000942.4-201ENST00000604811 241 ntBASIC5.29□□□□□ -1.56
LIG3P49916 CTHRC1P1-201ENST00000605383 469 ntBASIC5.29□□□□□ -1.56
LIG3P49916 AC211433.2-201ENST00000608433 387 ntBASIC5.29□□□□□ -1.56
LIG3P49916 AP001521.2-201ENST00000608772 546 ntBASIC5.29□□□□□ -1.56
LIG3P49916 AL121612.2-201ENST00000612261 482 ntBASIC5.29□□□□□ -1.56
LIG3P49916 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC5.29□□□□□ -1.56
LIG3P49916 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
LIG3P49916 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
LIG3P49916 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
LIG3P49916 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC5.29□□□□□ -1.56
LIG3P49916 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC5.29□□□□□ -1.56
LIG3P49916 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC5.28□□□□□ -1.56
LIG3P49916 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC5.28□□□□□ -1.56
LIG3P49916 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
LIG3P49916 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC5.28□□□□□ -1.56
LIG3P49916 EOGT-209ENST00000540955 1332 ntTSL 2 BASIC5.28□□□□□ -1.56
LIG3P49916 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC5.28□□□□□ -1.56
LIG3P49916 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
LIG3P49916 CHRM2-203ENST00000445907 5918 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
LIG3P49916 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC5.28□□□□□ -1.56
LIG3P49916 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
LIG3P49916 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC5.28□□□□□ -1.56
LIG3P49916 ELOVL7-203ENST00000505959 4165 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
LIG3P49916 SNORA17.1-201ENST00000362945 126 ntBASIC5.28□□□□□ -1.56
LIG3P49916 RNU4-44P-201ENST00000363050 141 ntBASIC5.28□□□□□ -1.56
LIG3P49916 SNORA4.3-201ENST00000365564 137 ntBASIC5.28□□□□□ -1.56
LIG3P49916 Y_RNA.378-201ENST00000365652 113 ntBASIC5.28□□□□□ -1.56
LIG3P49916 RNU6-43P-201ENST00000384302 107 ntBASIC5.28□□□□□ -1.56
LIG3P49916 Y_RNA.576-201ENST00000384781 102 ntBASIC5.28□□□□□ -1.56
LIG3P49916 RNU6ATAC21P-201ENST00000408656 126 ntBASIC5.28□□□□□ -1.56
LIG3P49916 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC5.28□□□□□ -1.56
LIG3P49916 BX323014.1-201ENST00000412876 237 ntBASIC5.28□□□□□ -1.56
LIG3P49916 UBE2FP1-201ENST00000416536 447 ntBASIC5.28□□□□□ -1.56
LIG3P49916 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC5.28□□□□□ -1.56
LIG3P49916 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC5.28□□□□□ -1.56
LIG3P49916 EIF4EBP2P1-201ENST00000450009 343 ntBASIC5.28□□□□□ -1.56
LIG3P49916 AL445433.1-201ENST00000457507 257 ntBASIC5.28□□□□□ -1.56
LIG3P49916 AC079168.1-201ENST00000458741 345 ntBASIC5.28□□□□□ -1.56
LIG3P49916 RPL35AP28-201ENST00000459730 331 ntBASIC5.28□□□□□ -1.56
LIG3P49916 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC5.28□□□□□ -1.56
LIG3P49916 AC004801.2-202ENST00000463559 283 ntBASIC5.28□□□□□ -1.56
LIG3P49916 AC009127.1-201ENST00000467090 155 ntBASIC5.28□□□□□ -1.56
LIG3P49916 RN7SL432P-201ENST00000484057 298 ntBASIC5.28□□□□□ -1.56
LIG3P49916 SNRPCP2-201ENST00000504370 475 ntBASIC5.28□□□□□ -1.56
LIG3P49916 AC104806.1-201ENST00000508720 308 ntBASIC5.28□□□□□ -1.56
LIG3P49916 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC5.28□□□□□ -1.56
LIG3P49916 AL671862.1-201ENST00000515851 349 ntBASIC5.28□□□□□ -1.56
LIG3P49916 SNORD116-26-201ENST00000516006 96 ntBASIC5.28□□□□□ -1.56
LIG3P49916 RN7SKP234-201ENST00000517173 224 ntBASIC5.28□□□□□ -1.56
LIG3P49916 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC5.28□□□□□ -1.56
LIG3P49916 MAL2-208ENST00000523307 556 ntTSL 4 BASIC5.28□□□□□ -1.56
LIG3P49916 AP000763.2-201ENST00000540641 163 ntBASIC5.28□□□□□ -1.56
LIG3P49916 APPL2-203ENST00000546731 684 ntTSL 2 BASIC5.28□□□□□ -1.56
LIG3P49916 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC5.28□□□□□ -1.56
LIG3P49916 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC5.28□□□□□ -1.56
LIG3P49916 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC5.28□□□□□ -1.56
LIG3P49916 AC044860.2-201ENST00000561005 179 ntBASIC5.28□□□□□ -1.56
LIG3P49916 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC5.28□□□□□ -1.56
LIG3P49916 MIR3691-201ENST00000578066 90 ntBASIC5.28□□□□□ -1.56
LIG3P49916 AL669831.4-202ENST00000590817 238 ntBASIC5.28□□□□□ -1.56
LIG3P49916 BNIP3P25-201ENST00000596023 559 ntBASIC5.28□□□□□ -1.56
LIG3P49916 TEX41-238ENST00000604253 709 ntTSL 5 BASIC5.28□□□□□ -1.56
LIG3P49916 AL008729.2-201ENST00000606393 473 ntBASIC5.28□□□□□ -1.56
LIG3P49916 SNORD91B-202ENST00000608459 222 ntBASIC5.28□□□□□ -1.56
LIG3P49916 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC5.28□□□□□ -1.56
LIG3P49916 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC5.28□□□□□ -1.56
LIG3P49916 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
LIG3P49916 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC5.28□□□□□ -1.56
LIG3P49916 USP8-204ENST00000425032 3559 ntTSL 2 BASIC5.27□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 136.2 ms