Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC3.42□□□□□ -1.86
HOXA1P49639 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.42□□□□□ -1.86
HOXA1P49639 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
HOXA1P49639 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC3.42□□□□□ -1.86
HOXA1P49639 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
HOXA1P49639 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
HOXA1P49639 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
HOXA1P49639 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC3.41□□□□□ -1.86
HOXA1P49639 GABPAP-201ENST00000419271 1356 ntBASIC3.41□□□□□ -1.86
HOXA1P49639 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
HOXA1P49639 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
HOXA1P49639 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.41□□□□□ -1.86
HOXA1P49639 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.41□□□□□ -1.86
HOXA1P49639 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC3.41□□□□□ -1.86
HOXA1P49639 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC3.41□□□□□ -1.86
HOXA1P49639 RN7SKP226-201ENST00000364912 300 ntBASIC3.41□□□□□ -1.86
HOXA1P49639 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
HOXA1P49639 RNU6-259P-201ENST00000383999 107 ntBASIC3.41□□□□□ -1.86
HOXA1P49639 RNU6-761P-201ENST00000384148 107 ntBASIC3.41□□□□□ -1.86
HOXA1P49639 RPL7P25-201ENST00000404151 721 ntBASIC3.41□□□□□ -1.86
HOXA1P49639 AL359704.1-201ENST00000411586 781 ntBASIC3.41□□□□□ -1.86
HOXA1P49639 AC092447.6-201ENST00000414578 210 ntBASIC3.41□□□□□ -1.86
HOXA1P49639 SPA17P1-201ENST00000416656 452 ntBASIC3.41□□□□□ -1.86
HOXA1P49639 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC3.41□□□□□ -1.86
HOXA1P49639 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC3.41□□□□□ -1.86
HOXA1P49639 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC3.41□□□□□ -1.86
HOXA1P49639 USP9YP36-201ENST00000424581 829 ntBASIC3.41□□□□□ -1.86
HOXA1P49639 AL589872.1-201ENST00000426602 288 ntBASIC3.41□□□□□ -1.86
HOXA1P49639 ISCA1P6-201ENST00000427740 390 ntBASIC3.41□□□□□ -1.86
HOXA1P49639 BX890604.2-201ENST00000427883 474 ntBASIC3.41□□□□□ -1.86
HOXA1P49639 AL139327.2-202ENST00000437057 400 ntTSL 3 BASIC3.41□□□□□ -1.86
HOXA1P49639 SKP1P1-201ENST00000438081 489 ntBASIC3.41□□□□□ -1.86
HOXA1P49639 AC074327.1-202ENST00000443523 369 ntTSL 2 BASIC3.41□□□□□ -1.86
HOXA1P49639 RPL17P49-201ENST00000443728 411 ntBASIC3.41□□□□□ -1.86
HOXA1P49639 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC3.41□□□□□ -1.86
HOXA1P49639 GAPDHP17-201ENST00000449858 1001 ntBASIC3.41□□□□□ -1.86
HOXA1P49639 AL353691.1-201ENST00000451332 387 ntBASIC3.41□□□□□ -1.86
HOXA1P49639 LINC01767-201ENST00000451914 545 ntTSL 2 BASIC3.41□□□□□ -1.86
HOXA1P49639 RAD23BP3-201ENST00000454157 1152 ntBASIC3.41□□□□□ -1.86
HOXA1P49639 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC3.41□□□□□ -1.86
HOXA1P49639 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC3.41□□□□□ -1.86
HOXA1P49639 AC010326.1-201ENST00000462726 602 ntBASIC3.41□□□□□ -1.86
HOXA1P49639 AC053481.1-201ENST00000467217 306 ntBASIC3.41□□□□□ -1.86
HOXA1P49639 RN7SL354P-201ENST00000469282 294 ntBASIC3.41□□□□□ -1.86
HOXA1P49639 RPS29P19-201ENST00000479709 171 ntBASIC3.41□□□□□ -1.86
HOXA1P49639 GYPB-202ENST00000502664 521 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
HOXA1P49639 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC3.41□□□□□ -1.86
HOXA1P49639 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC3.41□□□□□ -1.86
HOXA1P49639 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC3.41□□□□□ -1.86
HOXA1P49639 AC006390.1-201ENST00000508068 283 ntBASIC3.41□□□□□ -1.86
HOXA1P49639 TXNP6-201ENST00000510190 310 ntBASIC3.41□□□□□ -1.86
HOXA1P49639 Vault.1-201ENST00000516474 102 ntBASIC3.41□□□□□ -1.86
HOXA1P49639 RNU6-1003P-201ENST00000517099 105 ntBASIC3.41□□□□□ -1.86
HOXA1P49639 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC3.41□□□□□ -1.86
HOXA1P49639 TRAPPC2P2-201ENST00000517589 409 ntBASIC3.41□□□□□ -1.86
HOXA1P49639 MTND1P5-201ENST00000517906 940 ntBASIC3.41□□□□□ -1.86
HOXA1P49639 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC3.41□□□□□ -1.86
HOXA1P49639 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC3.41□□□□□ -1.86
HOXA1P49639 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC3.41□□□□□ -1.86
HOXA1P49639 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC3.41□□□□□ -1.86
HOXA1P49639 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC3.41□□□□□ -1.86
HOXA1P49639 AC099489.2-201ENST00000574976 260 ntBASIC3.41□□□□□ -1.86
HOXA1P49639 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC3.41□□□□□ -1.86
HOXA1P49639 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC3.41□□□□□ -1.86
HOXA1P49639 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC3.41□□□□□ -1.86
HOXA1P49639 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC3.41□□□□□ -1.86
HOXA1P49639 AC004853.1-201ENST00000604902 698 ntBASIC3.41□□□□□ -1.86
HOXA1P49639 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC3.41□□□□□ -1.86
HOXA1P49639 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
HOXA1P49639 AC099669.2-201ENST00000616549 437 ntBASIC3.41□□□□□ -1.86
HOXA1P49639 AC068137.3-201ENST00000639191 341 ntBASIC3.41□□□□□ -1.86
HOXA1P49639 AC073869.6-201ENST00000640656 341 ntBASIC3.41□□□□□ -1.86
HOXA1P49639 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.41□□□□□ -1.86
HOXA1P49639 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC3.41□□□□□ -1.86
HOXA1P49639 MTND5P26-201ENST00000426018 1752 ntBASIC3.4□□□□□ -1.86
HOXA1P49639 PABPC1P7-201ENST00000413177 1513 ntBASIC3.4□□□□□ -1.86
HOXA1P49639 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC3.4□□□□□ -1.86
HOXA1P49639 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC3.4□□□□□ -1.86
HOXA1P49639 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC3.4□□□□□ -1.86
HOXA1P49639 AC008033.1-201ENST00000216407 1162 ntBASIC3.4□□□□□ -1.87
HOXA1P49639 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
HOXA1P49639 U8.3-201ENST00000363321 132 ntBASIC3.4□□□□□ -1.87
HOXA1P49639 SNORD113.2-201ENST00000364166 89 ntBASIC3.4□□□□□ -1.87
HOXA1P49639 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC3.4□□□□□ -1.87
HOXA1P49639 RNU6-1042P-201ENST00000384204 107 ntBASIC3.4□□□□□ -1.87
HOXA1P49639 ERMN-204ENST00000409925 556 ntTSL 4 BASIC3.4□□□□□ -1.87
HOXA1P49639 RNU2-47P-201ENST00000410649 186 ntBASIC3.4□□□□□ -1.87
HOXA1P49639 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC3.4□□□□□ -1.87
HOXA1P49639 AC017079.2-201ENST00000416102 485 ntBASIC3.4□□□□□ -1.87
HOXA1P49639 AC245052.5-201ENST00000416320 649 ntBASIC3.4□□□□□ -1.87
HOXA1P49639 C1DP2-201ENST00000418167 426 ntBASIC3.4□□□□□ -1.87
HOXA1P49639 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC3.4□□□□□ -1.87
HOXA1P49639 LAMTOR3P1-201ENST00000428620 370 ntBASIC3.4□□□□□ -1.87
HOXA1P49639 AL358934.1-201ENST00000432346 324 ntBASIC3.4□□□□□ -1.87
HOXA1P49639 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
HOXA1P49639 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC3.4□□□□□ -1.87
HOXA1P49639 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC3.4□□□□□ -1.87
HOXA1P49639 RPL23AP52-201ENST00000439311 478 ntBASIC3.4□□□□□ -1.87
HOXA1P49639 SAGE4P-201ENST00000442271 3381 ntBASIC3.4□□□□□ -1.87
HOXA1P49639 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC3.4□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 131.3 ms