Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 LINC02316-201ENST00000553346 768 ntTSL 3 BASIC2.96□□□□□ -1.94
BRCA1P38398 AC003009.1-201ENST00000571611 686 ntTSL 3 BASIC2.96□□□□□ -1.94
BRCA1P38398 AL355802.4-201ENST00000607635 548 ntBASIC2.96□□□□□ -1.94
BRCA1P38398 AL161616.2-201ENST00000622001 565 ntTSL 4 BASIC2.96□□□□□ -1.94
BRCA1P38398 LINC02246-204ENST00000625278 740 ntTSL 5 BASIC2.96□□□□□ -1.94
BRCA1P38398 AC245427.3-201ENST00000632041 51 ntAPPRIS P1 BASIC2.96□□□□□ -1.94
BRCA1P38398 AC068620.4-201ENST00000636730 1182 ntBASIC2.96□□□□□ -1.94
BRCA1P38398 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC2.96□□□□□ -1.94
BRCA1P38398 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC2.95□□□□□ -1.94
BRCA1P38398 RNU6-629P-201ENST00000384061 103 ntBASIC2.95□□□□□ -1.94
BRCA1P38398 UBE2V1P9-201ENST00000414760 368 ntBASIC2.95□□□□□ -1.94
BRCA1P38398 AC096632.1-201ENST00000427395 310 ntBASIC2.95□□□□□ -1.94
BRCA1P38398 LINC00692-201ENST00000451284 932 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
BRCA1P38398 AC126182.1-201ENST00000478134 357 ntBASIC2.95□□□□□ -1.94
BRCA1P38398 AC104090.1-201ENST00000506341 1171 ntBASIC2.95□□□□□ -1.94
BRCA1P38398 AC116337.1-201ENST00000509680 687 ntBASIC2.95□□□□□ -1.94
BRCA1P38398 AC104108.1-201ENST00000509930 412 ntBASIC2.95□□□□□ -1.94
BRCA1P38398 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC2.95□□□□□ -1.94
BRCA1P38398 AC021269.2-201ENST00000532318 330 ntBASIC2.95□□□□□ -1.94
BRCA1P38398 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC2.95□□□□□ -1.94
BRCA1P38398 AP001180.3-201ENST00000582221 145 ntBASIC2.95□□□□□ -1.94
BRCA1P38398 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
BRCA1P38398 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
BRCA1P38398 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC2.95□□□□□ -1.94
BRCA1P38398 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
BRCA1P38398 UGT2B10-201ENST00000265403 1931 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
BRCA1P38398 CPXCR1-203ENST00000614120 1485 ntAPPRIS P1 TSL 3 BASIC2.94□□□□□ -1.94
BRCA1P38398 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
BRCA1P38398 SNORD115-48-201ENST00000364764 76 ntBASIC2.94□□□□□ -1.94
BRCA1P38398 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
BRCA1P38398 NRG4-201ENST00000394907 1159 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
BRCA1P38398 AL390023.1-201ENST00000428836 262 ntBASIC2.94□□□□□ -1.94
BRCA1P38398 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC2.94□□□□□ -1.94
BRCA1P38398 HMGN3P1-201ENST00000453847 193 ntBASIC2.94□□□□□ -1.94
BRCA1P38398 MTND2P6-201ENST00000455337 1030 ntBASIC2.94□□□□□ -1.94
BRCA1P38398 AC112673.1-201ENST00000513168 575 ntBASIC2.94□□□□□ -1.94
BRCA1P38398 RNA5SP281-201ENST00000516504 135 ntBASIC2.94□□□□□ -1.94
BRCA1P38398 RN7SKP219-201ENST00000516825 296 ntBASIC2.94□□□□□ -1.94
BRCA1P38398 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC2.94□□□□□ -1.94
BRCA1P38398 AP001033.2-201ENST00000609701 1003 ntBASIC2.94□□□□□ -1.94
BRCA1P38398 AC046143.2-201ENST00000609789 160 ntBASIC2.94□□□□□ -1.94
BRCA1P38398 MIR8070-201ENST00000616510 88 ntBASIC2.94□□□□□ -1.94
BRCA1P38398 U6.107-201ENST00000637108 79 ntBASIC2.94□□□□□ -1.94
BRCA1P38398 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC2.94□□□□□ -1.94
BRCA1P38398 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC2.94□□□□□ -1.94
BRCA1P38398 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC2.94□□□□□ -1.94
BRCA1P38398 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC2.94□□□□□ -1.94
BRCA1P38398 SNORA64-201ENST00000384674 134 ntBASIC2.94□□□□□ -1.94
BRCA1P38398 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC2.94□□□□□ -1.94
BRCA1P38398 AC007179.2-204ENST00000444001 765 ntTSL 3 BASIC2.94□□□□□ -1.94
BRCA1P38398 AC104389.3-201ENST00000445629 235 ntBASIC2.94□□□□□ -1.94
BRCA1P38398 AC026436.1-201ENST00000510537 270 ntBASIC2.94□□□□□ -1.94
BRCA1P38398 AC104057.1-201ENST00000515547 497 ntBASIC2.94□□□□□ -1.94
BRCA1P38398 AC011008.1-201ENST00000522026 439 ntTSL 3 BASIC2.94□□□□□ -1.94
BRCA1P38398 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC2.94□□□□□ -1.94
BRCA1P38398 LINC00557-201ENST00000563184 1279 ntBASIC2.94□□□□□ -1.94
BRCA1P38398 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC2.94□□□□□ -1.94
BRCA1P38398 MIR4498-201ENST00000577599 66 ntBASIC2.94□□□□□ -1.94
BRCA1P38398 AL163051.2-201ENST00000618976 735 ntBASIC2.94□□□□□ -1.94
BRCA1P38398 OR4A15-202ENST00000641526 945 ntAPPRIS P1 BASIC2.94□□□□□ -1.94
BRCA1P38398 AC080128.1-201ENST00000474389 1917 ntBASIC2.94□□□□□ -1.94
BRCA1P38398 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC2.94□□□□□ -1.94
BRCA1P38398 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
BRCA1P38398 ANKRD18EP-201ENST00000405487 2632 ntBASIC2.93□□□□□ -1.94
BRCA1P38398 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC2.93□□□□□ -1.94
BRCA1P38398 ENSAP3-201ENST00000312710 333 ntBASIC2.93□□□□□ -1.94
BRCA1P38398 Y_RNA.118-201ENST00000363300 101 ntBASIC2.93□□□□□ -1.94
BRCA1P38398 RNU6-1339P-201ENST00000363574 91 ntBASIC2.93□□□□□ -1.94
BRCA1P38398 KLRC2-201ENST00000381901 1211 ntAPPRIS ALT2 TSL 5 BASIC2.93□□□□□ -1.94
BRCA1P38398 SNORA51.12-201ENST00000384448 134 ntBASIC2.93□□□□□ -1.94
BRCA1P38398 PRRC2CP1-201ENST00000404428 159 ntBASIC2.93□□□□□ -1.94
BRCA1P38398 RN7SKP32-201ENST00000410167 303 ntBASIC2.93□□□□□ -1.94
BRCA1P38398 AC107081.1-201ENST00000414975 361 ntBASIC2.93□□□□□ -1.94
BRCA1P38398 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
BRCA1P38398 KCTD9P5-201ENST00000504141 1170 ntBASIC2.93□□□□□ -1.94
BRCA1P38398 FAM92A1P2-202ENST00000504766 877 ntBASIC2.93□□□□□ -1.94
BRCA1P38398 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC2.93□□□□□ -1.94
BRCA1P38398 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.93□□□□□ -1.94
BRCA1P38398 RNU2-58P-201ENST00000516403 183 ntBASIC2.93□□□□□ -1.94
BRCA1P38398 AL133271.1-201ENST00000538229 291 ntBASIC2.93□□□□□ -1.94
BRCA1P38398 MEG8-218ENST00000556720 456 ntTSL 3 BASIC2.93□□□□□ -1.94
BRCA1P38398 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC2.93□□□□□ -1.94
BRCA1P38398 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC2.93□□□□□ -1.94
BRCA1P38398 AC083760.1-201ENST00000589621 670 ntBASIC2.93□□□□□ -1.94
BRCA1P38398 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC2.93□□□□□ -1.94
BRCA1P38398 AC040174.2-201ENST00000602701 465 ntBASIC2.93□□□□□ -1.94
BRCA1P38398 KLRC2-206ENST00000619500 883 ntTSL 5 BASIC2.93□□□□□ -1.94
BRCA1P38398 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC2.93□□□□□ -1.94
BRCA1P38398 AP001350.1-201ENST00000601906 1524 ntBASIC2.93□□□□□ -1.94
BRCA1P38398 OR5T1-202ENST00000641665 1471 ntAPPRIS P1 BASIC2.93□□□□□ -1.94
BRCA1P38398 MTND5P31-201ENST00000419366 1374 ntBASIC2.93□□□□□ -1.94
BRCA1P38398 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC2.92□□□□□ -1.94
BRCA1P38398 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
BRCA1P38398 AL589826.1-201ENST00000340697 249 ntBASIC2.92□□□□□ -1.94
BRCA1P38398 Y_RNA.164-201ENST00000363709 102 ntBASIC2.92□□□□□ -1.94
BRCA1P38398 MIR181B1-201ENST00000385240 110 ntBASIC2.92□□□□□ -1.94
BRCA1P38398 RNU6-272P-201ENST00000411028 104 ntBASIC2.92□□□□□ -1.94
BRCA1P38398 NUP35P2-201ENST00000416748 943 ntBASIC2.92□□□□□ -1.94
BRCA1P38398 AC008173.1-201ENST00000418901 264 ntBASIC2.92□□□□□ -1.94
BRCA1P38398 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC2.92□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 105.3 ms