Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AL161629.1-201ENST00000446201 457 ntTSL 3 BASIC4.46□□□□□ -1.7
MSX2P35548 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC4.46□□□□□ -1.7
MSX2P35548 AC097484.1-201ENST00000471148 389 ntBASIC4.46□□□□□ -1.7
MSX2P35548 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC4.46□□□□□ -1.7
MSX2P35548 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC4.46□□□□□ -1.7
MSX2P35548 SNORD27.1-201ENST00000516319 72 ntBASIC4.46□□□□□ -1.7
MSX2P35548 RN7SKP260-201ENST00000516907 149 ntBASIC4.46□□□□□ -1.7
MSX2P35548 AC069113.2-201ENST00000517735 359 ntTSL 3 BASIC4.46□□□□□ -1.7
MSX2P35548 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC4.46□□□□□ -1.7
MSX2P35548 AC022882.1-201ENST00000532142 501 ntBASIC4.46□□□□□ -1.7
MSX2P35548 OR5BN1P-201ENST00000532955 829 ntBASIC4.46□□□□□ -1.7
MSX2P35548 DERA-209ENST00000532964 854 ntTSL 5 BASIC4.46□□□□□ -1.7
MSX2P35548 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC4.46□□□□□ -1.7
MSX2P35548 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC4.46□□□□□ -1.7
MSX2P35548 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC4.46□□□□□ -1.7
MSX2P35548 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC4.46□□□□□ -1.7
MSX2P35548 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC4.46□□□□□ -1.7
MSX2P35548 KC877982.1-201ENST00000602313 470 ntBASIC4.46□□□□□ -1.7
MSX2P35548 RPL23AP92-201ENST00000603609 255 ntBASIC4.46□□□□□ -1.7
MSX2P35548 AC090948.1-201ENST00000607464 549 ntBASIC4.46□□□□□ -1.7
MSX2P35548 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC4.46□□□□□ -1.7
MSX2P35548 LINC00901.1-201ENST00000617252 152 ntBASIC4.46□□□□□ -1.7
MSX2P35548 AL138828.1-201ENST00000626414 291 ntTSL 5 BASIC4.46□□□□□ -1.7
MSX2P35548 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC4.46□□□□□ -1.7
MSX2P35548 AL592182.3-201ENST00000642132 3304 ntBASIC4.46□□□□□ -1.7
MSX2P35548 SUPT16HP1-201ENST00000537175 3133 ntBASIC4.46□□□□□ -1.7
MSX2P35548 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC4.46□□□□□ -1.7
MSX2P35548 AC130650.2-201ENST00000618736 2403 ntBASIC4.46□□□□□ -1.7
MSX2P35548 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC4.46□□□□□ -1.7
MSX2P35548 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC4.46□□□□□ -1.7
MSX2P35548 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC4.46□□□□□ -1.7
MSX2P35548 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC4.46□□□□□ -1.7
MSX2P35548 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
MSX2P35548 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.46□□□□□ -1.7
MSX2P35548 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
MSX2P35548 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
MSX2P35548 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC4.45□□□□□ -1.7
MSX2P35548 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
MSX2P35548 AC091046.3-201ENST00000631455 1574 ntBASIC4.45□□□□□ -1.7
MSX2P35548 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC4.45□□□□□ -1.7
MSX2P35548 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
MSX2P35548 Y_RNA.315-201ENST00000365117 102 ntBASIC4.45□□□□□ -1.7
MSX2P35548 SNORD42.2-201ENST00000365570 69 ntBASIC4.45□□□□□ -1.7
MSX2P35548 RNU4-20P-201ENST00000365601 151 ntBASIC4.45□□□□□ -1.7
MSX2P35548 Y_RNA.387-201ENST00000383918 102 ntBASIC4.45□□□□□ -1.7
MSX2P35548 SNORA70-201ENST00000384436 135 ntBASIC4.45□□□□□ -1.7
MSX2P35548 MIR514A2-201ENST00000385131 88 ntBASIC4.45□□□□□ -1.7
MSX2P35548 MIR514A3-201ENST00000385132 88 ntBASIC4.45□□□□□ -1.7
MSX2P35548 MIR937-201ENST00000401271 86 ntBASIC4.45□□□□□ -1.7
MSX2P35548 SPTLC1P2-201ENST00000407089 121 ntBASIC4.45□□□□□ -1.7
MSX2P35548 MIR548P-201ENST00000408336 84 ntBASIC4.45□□□□□ -1.7
MSX2P35548 RNU4-34P-201ENST00000410431 124 ntBASIC4.45□□□□□ -1.7
MSX2P35548 Y_RNA.615-201ENST00000410769 117 ntBASIC4.45□□□□□ -1.7
MSX2P35548 AC012065.2-201ENST00000421295 375 ntBASIC4.45□□□□□ -1.7
MSX2P35548 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC4.45□□□□□ -1.7
MSX2P35548 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC4.45□□□□□ -1.7
MSX2P35548 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC4.45□□□□□ -1.7
MSX2P35548 CFL1P1-202ENST00000432948 411 ntBASIC4.45□□□□□ -1.7
MSX2P35548 AL138799.3-201ENST00000438968 350 ntBASIC4.45□□□□□ -1.7
MSX2P35548 AC009487.1-201ENST00000444164 403 ntTSL 3 BASIC4.45□□□□□ -1.7
MSX2P35548 AC104073.1-201ENST00000451988 151 ntBASIC4.45□□□□□ -1.7
MSX2P35548 GMFBP1-201ENST00000467831 427 ntBASIC4.45□□□□□ -1.7
MSX2P35548 AL136126.1-201ENST00000473603 402 ntBASIC4.45□□□□□ -1.7
MSX2P35548 RN7SL319P-201ENST00000480656 221 ntBASIC4.45□□□□□ -1.7
MSX2P35548 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC4.45□□□□□ -1.7
MSX2P35548 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC4.45□□□□□ -1.7
MSX2P35548 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC4.45□□□□□ -1.7
MSX2P35548 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC4.45□□□□□ -1.7
MSX2P35548 ARL6IP1P1-201ENST00000545836 610 ntBASIC4.45□□□□□ -1.7
MSX2P35548 BNIP3P6-201ENST00000549284 499 ntBASIC4.45□□□□□ -1.7
MSX2P35548 AC044860.2-201ENST00000561005 179 ntBASIC4.45□□□□□ -1.7
MSX2P35548 MIR4504-201ENST00000577413 92 ntBASIC4.45□□□□□ -1.7
MSX2P35548 AC053481.3-201ENST00000577881 843 ntBASIC4.45□□□□□ -1.7
MSX2P35548 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC4.45□□□□□ -1.7
MSX2P35548 MIR3171-201ENST00000584270 74 ntBASIC4.45□□□□□ -1.7
MSX2P35548 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC4.45□□□□□ -1.7
MSX2P35548 FKBP1AP1-201ENST00000594588 318 ntBASIC4.45□□□□□ -1.7
MSX2P35548 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC4.45□□□□□ -1.7
MSX2P35548 AC087763.1-201ENST00000603391 286 ntBASIC4.45□□□□□ -1.7
MSX2P35548 AL133215.3-201ENST00000609801 448 ntBASIC4.45□□□□□ -1.7
MSX2P35548 AC093838.1-201ENST00000613014 469 ntBASIC4.45□□□□□ -1.7
MSX2P35548 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC4.45□□□□□ -1.7
MSX2P35548 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC4.45□□□□□ -1.7
MSX2P35548 DAOA-212ENST00000640578 378 ntAPPRIS ALT2 TSL 5 BASIC4.45□□□□□ -1.7
MSX2P35548 LPAR4-201ENST00000435339 2611 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
MSX2P35548 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC4.45□□□□□ -1.7
MSX2P35548 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC4.45□□□□□ -1.7
MSX2P35548 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC4.45□□□□□ -1.7
MSX2P35548 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
MSX2P35548 C4BPAP1-201ENST00000415474 1893 ntBASIC4.45□□□□□ -1.7
MSX2P35548 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC4.45□□□□□ -1.7
MSX2P35548 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC4.45□□□□□ -1.7
MSX2P35548 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC4.45□□□□□ -1.7
MSX2P35548 ASNSP3-201ENST00000451989 1306 ntBASIC4.45□□□□□ -1.7
MSX2P35548 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC4.44□□□□□ -1.7
MSX2P35548 AC011978.2-201ENST00000569835 2054 ntBASIC4.44□□□□□ -1.7
MSX2P35548 OR51H2P-202ENST00000641424 3046 ntBASIC4.44□□□□□ -1.7
MSX2P35548 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC4.44□□□□□ -1.7
MSX2P35548 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
MSX2P35548 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 87.3 ms