Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 RNU6-621P-201ENST00000364752 109 ntBASIC4.09□□□□□ -1.75
HOXC9P31274 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC4.09□□□□□ -1.75
HOXC9P31274 RNU6-1226P-201ENST00000384317 107 ntBASIC4.09□□□□□ -1.75
HOXC9P31274 SNRPEP2-201ENST00000397592 279 ntBASIC4.09□□□□□ -1.75
HOXC9P31274 RPL7P25-201ENST00000404151 721 ntBASIC4.09□□□□□ -1.75
HOXC9P31274 AL450338.1-201ENST00000407987 512 ntBASIC4.09□□□□□ -1.75
HOXC9P31274 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC4.09□□□□□ -1.75
HOXC9P31274 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC4.09□□□□□ -1.75
HOXC9P31274 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC4.09□□□□□ -1.75
HOXC9P31274 OR5H14-201ENST00000437310 1080 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
HOXC9P31274 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC4.09□□□□□ -1.75
HOXC9P31274 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC4.09□□□□□ -1.75
HOXC9P31274 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC4.09□□□□□ -1.75
HOXC9P31274 AC092757.1-201ENST00000467293 467 ntBASIC4.09□□□□□ -1.75
HOXC9P31274 AC087385.1-201ENST00000475062 312 ntBASIC4.09□□□□□ -1.75
HOXC9P31274 AC093281.2-201ENST00000510153 597 ntBASIC4.09□□□□□ -1.75
HOXC9P31274 RNU6-1129P-201ENST00000515964 104 ntBASIC4.09□□□□□ -1.75
HOXC9P31274 RNA5SP356-201ENST00000515972 94 ntBASIC4.09□□□□□ -1.75
HOXC9P31274 PTK2-220ENST00000520151 573 ntTSL 4 BASIC4.09□□□□□ -1.75
HOXC9P31274 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
HOXC9P31274 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC4.09□□□□□ -1.75
HOXC9P31274 EMP1-206ENST00000537612 505 ntTSL 3 BASIC4.09□□□□□ -1.75
HOXC9P31274 LYZ-203ENST00000549690 669 ntTSL 2 BASIC4.09□□□□□ -1.75
HOXC9P31274 LSM6P2-201ENST00000552208 177 ntBASIC4.09□□□□□ -1.75
HOXC9P31274 SULT1C2P1-202ENST00000562418 459 ntBASIC4.09□□□□□ -1.75
HOXC9P31274 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC4.09□□□□□ -1.75
HOXC9P31274 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC4.09□□□□□ -1.75
HOXC9P31274 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC4.09□□□□□ -1.75
HOXC9P31274 MTND4P26-201ENST00000415971 1359 ntBASIC4.09□□□□□ -1.75
HOXC9P31274 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC4.09□□□□□ -1.75
HOXC9P31274 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC4.09□□□□□ -1.76
HOXC9P31274 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.76
HOXC9P31274 AL672296.1-201ENST00000427780 2158 ntBASIC4.09□□□□□ -1.76
HOXC9P31274 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC4.08□□□□□ -1.76
HOXC9P31274 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
HOXC9P31274 RNU6-216P-201ENST00000363282 104 ntBASIC4.08□□□□□ -1.76
HOXC9P31274 AP002088.1-201ENST00000382740 395 ntBASIC4.08□□□□□ -1.76
HOXC9P31274 RNU6-1122P-201ENST00000384449 107 ntBASIC4.08□□□□□ -1.76
HOXC9P31274 AL049545.1-201ENST00000401856 572 ntBASIC4.08□□□□□ -1.76
HOXC9P31274 SSXP10-201ENST00000402595 565 ntBASIC4.08□□□□□ -1.76
HOXC9P31274 FAM26D-203ENST00000405399 1165 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
HOXC9P31274 AL023807.1-201ENST00000407932 359 ntBASIC4.08□□□□□ -1.76
HOXC9P31274 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC4.08□□□□□ -1.76
HOXC9P31274 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC4.08□□□□□ -1.76
HOXC9P31274 TIMM9P2-201ENST00000419324 266 ntBASIC4.08□□□□□ -1.76
HOXC9P31274 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC4.08□□□□□ -1.76
HOXC9P31274 LINC01674-201ENST00000427446 504 ntTSL 3 BASIC4.08□□□□□ -1.76
HOXC9P31274 AL050303.1-201ENST00000444356 458 ntTSL 2 BASIC4.08□□□□□ -1.76
HOXC9P31274 MTATP6P26-201ENST00000445926 662 ntBASIC4.08□□□□□ -1.76
HOXC9P31274 ELL2P4-201ENST00000446870 1376 ntBASIC4.08□□□□□ -1.76
HOXC9P31274 NDUFS5P3-201ENST00000450668 321 ntBASIC4.08□□□□□ -1.76
HOXC9P31274 AL133217.1-201ENST00000450980 425 ntBASIC4.08□□□□□ -1.76
HOXC9P31274 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC4.08□□□□□ -1.76
HOXC9P31274 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC4.08□□□□□ -1.76
HOXC9P31274 SNRPG-206ENST00000454893 527 ntTSL 3 BASIC4.08□□□□□ -1.76
HOXC9P31274 MTCO3P2-201ENST00000457365 171 ntBASIC4.08□□□□□ -1.76
HOXC9P31274 RPL37P6-202ENST00000464216 403 ntBASIC4.08□□□□□ -1.76
HOXC9P31274 ZNF542P-204ENST00000482727 1305 ntBASIC4.08□□□□□ -1.76
HOXC9P31274 MTCYBP17-201ENST00000503579 789 ntBASIC4.08□□□□□ -1.76
HOXC9P31274 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC4.08□□□□□ -1.76
HOXC9P31274 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC4.08□□□□□ -1.76
HOXC9P31274 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
HOXC9P31274 MRPS33P3-201ENST00000513456 322 ntBASIC4.08□□□□□ -1.76
HOXC9P31274 AC016065.2-201ENST00000514530 444 ntBASIC4.08□□□□□ -1.76
HOXC9P31274 MYLK-AS2-202ENST00000515464 754 ntTSL 2 BASIC4.08□□□□□ -1.76
HOXC9P31274 RN7SKP82-201ENST00000516786 223 ntBASIC4.08□□□□□ -1.76
HOXC9P31274 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC4.08□□□□□ -1.76
HOXC9P31274 AC105185.1-201ENST00000518705 535 ntBASIC4.08□□□□□ -1.76
HOXC9P31274 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC4.08□□□□□ -1.76
HOXC9P31274 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC4.08□□□□□ -1.76
HOXC9P31274 AC007834.2-201ENST00000536310 343 ntBASIC4.08□□□□□ -1.76
HOXC9P31274 OSBPL9P5-201ENST00000542581 171 ntBASIC4.08□□□□□ -1.76
HOXC9P31274 REXO2-218ENST00000544827 880 ntTSL 3 BASIC4.08□□□□□ -1.76
HOXC9P31274 AC008015.1-201ENST00000555505 465 ntBASIC4.08□□□□□ -1.76
HOXC9P31274 LINC02290-203ENST00000556662 577 ntTSL 4 BASIC4.08□□□□□ -1.76
HOXC9P31274 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC4.08□□□□□ -1.76
HOXC9P31274 AC067852.4-201ENST00000590314 478 ntBASIC4.08□□□□□ -1.76
HOXC9P31274 AP000526.1-201ENST00000603308 1388 ntBASIC4.08□□□□□ -1.76
HOXC9P31274 YWHAQP7-201ENST00000603536 658 ntBASIC4.08□□□□□ -1.76
HOXC9P31274 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC4.08□□□□□ -1.76
HOXC9P31274 AC007998.5-201ENST00000622938 237 ntBASIC4.08□□□□□ -1.76
HOXC9P31274 AC078883.4-201ENST00000623218 367 ntBASIC4.08□□□□□ -1.76
HOXC9P31274 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC4.08□□□□□ -1.76
HOXC9P31274 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC4.08□□□□□ -1.76
HOXC9P31274 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC4.08□□□□□ -1.76
HOXC9P31274 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
HOXC9P31274 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
HOXC9P31274 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC4.07□□□□□ -1.76
HOXC9P31274 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
HOXC9P31274 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC4.07□□□□□ -1.76
HOXC9P31274 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC4.07□□□□□ -1.76
HOXC9P31274 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
HOXC9P31274 AL356131.1-201ENST00000405826 414 ntBASIC4.07□□□□□ -1.76
HOXC9P31274 RNU6-55P-201ENST00000411092 107 ntBASIC4.07□□□□□ -1.76
HOXC9P31274 RNU6-954P-201ENST00000411355 107 ntBASIC4.07□□□□□ -1.76
HOXC9P31274 TRBV24OR9-2-201ENST00000416632 435 ntBASIC4.07□□□□□ -1.76
HOXC9P31274 MTND2P18-201ENST00000419962 1030 ntBASIC4.07□□□□□ -1.76
HOXC9P31274 AL593851.1-201ENST00000426171 157 ntBASIC4.07□□□□□ -1.76
HOXC9P31274 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC4.07□□□□□ -1.76
HOXC9P31274 MTND5P2-201ENST00000442927 1142 ntBASIC4.07□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 140.2 ms