Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC4.64□□□□□ -1.67
SMARCA1P28370 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC4.64□□□□□ -1.67
SMARCA1P28370 AC137800.2-201ENST00000574375 120 ntBASIC4.64□□□□□ -1.67
SMARCA1P28370 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC4.64□□□□□ -1.67
SMARCA1P28370 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC4.64□□□□□ -1.67
SMARCA1P28370 AC067959.1-201ENST00000604334 379 ntBASIC4.64□□□□□ -1.67
SMARCA1P28370 AC109347.2-201ENST00000610220 349 ntBASIC4.64□□□□□ -1.67
SMARCA1P28370 AC068944.2-201ENST00000610373 403 ntBASIC4.64□□□□□ -1.67
SMARCA1P28370 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC4.64□□□□□ -1.67
SMARCA1P28370 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC4.64□□□□□ -1.67
SMARCA1P28370 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC4.64□□□□□ -1.67
SMARCA1P28370 ZNF33BP1-201ENST00000452497 1834 ntBASIC4.64□□□□□ -1.67
SMARCA1P28370 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC4.64□□□□□ -1.67
SMARCA1P28370 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
SMARCA1P28370 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
SMARCA1P28370 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
SMARCA1P28370 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC4.63□□□□□ -1.67
SMARCA1P28370 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC4.63□□□□□ -1.67
SMARCA1P28370 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
SMARCA1P28370 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
SMARCA1P28370 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
SMARCA1P28370 FAM91A3P-201ENST00000456826 2544 ntBASIC4.63□□□□□ -1.67
SMARCA1P28370 Y_RNA.46-201ENST00000362695 102 ntBASIC4.63□□□□□ -1.67
SMARCA1P28370 RNU6-853P-201ENST00000364306 107 ntBASIC4.63□□□□□ -1.67
SMARCA1P28370 MTND4LP20-201ENST00000402379 270 ntBASIC4.63□□□□□ -1.67
SMARCA1P28370 RNA5SP104-201ENST00000410989 118 ntBASIC4.63□□□□□ -1.67
SMARCA1P28370 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC4.63□□□□□ -1.67
SMARCA1P28370 MTCYBP24-201ENST00000420387 1106 ntBASIC4.63□□□□□ -1.67
SMARCA1P28370 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC4.63□□□□□ -1.67
SMARCA1P28370 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC4.63□□□□□ -1.67
SMARCA1P28370 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC4.63□□□□□ -1.67
SMARCA1P28370 AL162151.2-201ENST00000448875 158 ntBASIC4.63□□□□□ -1.67
SMARCA1P28370 RPS11P1-201ENST00000451072 473 ntBASIC4.63□□□□□ -1.67
SMARCA1P28370 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC4.63□□□□□ -1.67
SMARCA1P28370 AP001025.2-201ENST00000490908 477 ntBASIC4.63□□□□□ -1.67
SMARCA1P28370 RPL7P24-201ENST00000493052 752 ntBASIC4.63□□□□□ -1.67
SMARCA1P28370 AC105252.1-201ENST00000503089 286 ntBASIC4.63□□□□□ -1.67
SMARCA1P28370 OR5H5P-201ENST00000503164 928 ntBASIC4.63□□□□□ -1.67
SMARCA1P28370 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC4.63□□□□□ -1.67
SMARCA1P28370 MTCO3P44-201ENST00000510977 541 ntBASIC4.63□□□□□ -1.67
SMARCA1P28370 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC4.63□□□□□ -1.67
SMARCA1P28370 SNORA18.6-201ENST00000516792 115 ntBASIC4.63□□□□□ -1.67
SMARCA1P28370 AP003467.2-201ENST00000520175 319 ntBASIC4.63□□□□□ -1.67
SMARCA1P28370 AC024224.1-201ENST00000538284 609 ntBASIC4.63□□□□□ -1.67
SMARCA1P28370 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC4.63□□□□□ -1.67
SMARCA1P28370 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC4.63□□□□□ -1.67
SMARCA1P28370 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC4.63□□□□□ -1.67
SMARCA1P28370 AC087883.1-201ENST00000551882 391 ntBASIC4.63□□□□□ -1.67
SMARCA1P28370 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC4.63□□□□□ -1.67
SMARCA1P28370 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC4.63□□□□□ -1.67
SMARCA1P28370 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC4.63□□□□□ -1.67
SMARCA1P28370 AC053481.3-201ENST00000577881 843 ntBASIC4.63□□□□□ -1.67
SMARCA1P28370 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC4.63□□□□□ -1.67
SMARCA1P28370 AC025946.2-201ENST00000603398 234 ntBASIC4.63□□□□□ -1.67
SMARCA1P28370 AL161729.4-201ENST00000604650 476 ntBASIC4.63□□□□□ -1.67
SMARCA1P28370 AL451044.1-201ENST00000604867 238 ntBASIC4.63□□□□□ -1.67
SMARCA1P28370 AC126118.1-201ENST00000607744 628 ntBASIC4.63□□□□□ -1.67
SMARCA1P28370 U73479.1-201ENST00000618062 168 ntBASIC4.63□□□□□ -1.67
SMARCA1P28370 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC4.63□□□□□ -1.67
SMARCA1P28370 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC4.63□□□□□ -1.67
SMARCA1P28370 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
SMARCA1P28370 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC4.63□□□□□ -1.67
SMARCA1P28370 Z82217.1-201ENST00000625157 8149 ntBASIC4.62□□□□□ -1.67
SMARCA1P28370 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC4.62□□□□□ -1.67
SMARCA1P28370 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
SMARCA1P28370 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC4.62□□□□□ -1.67
SMARCA1P28370 RNA5SP283-201ENST00000365604 119 ntBASIC4.62□□□□□ -1.67
SMARCA1P28370 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
SMARCA1P28370 RNU6-213P-201ENST00000384051 104 ntBASIC4.62□□□□□ -1.67
SMARCA1P28370 RNU5A-6P-201ENST00000384136 116 ntBASIC4.62□□□□□ -1.67
SMARCA1P28370 SNORA57.1-201ENST00000391227 145 ntBASIC4.62□□□□□ -1.67
SMARCA1P28370 MIR1193-201ENST00000408109 78 ntBASIC4.62□□□□□ -1.67
SMARCA1P28370 ERMN-204ENST00000409925 556 ntTSL 4 BASIC4.62□□□□□ -1.67
SMARCA1P28370 AC004552.1-201ENST00000419089 348 ntBASIC4.62□□□□□ -1.67
SMARCA1P28370 CYP4F29P-201ENST00000420685 446 ntBASIC4.62□□□□□ -1.67
SMARCA1P28370 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC4.62□□□□□ -1.67
SMARCA1P28370 AL691449.1-201ENST00000426570 421 ntBASIC4.62□□□□□ -1.67
SMARCA1P28370 SDCBPP1-201ENST00000440192 890 ntBASIC4.62□□□□□ -1.67
SMARCA1P28370 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC4.62□□□□□ -1.67
SMARCA1P28370 GAPDHP17-201ENST00000449858 1001 ntBASIC4.62□□□□□ -1.67
SMARCA1P28370 AC098824.1-201ENST00000453565 980 ntBASIC4.62□□□□□ -1.67
SMARCA1P28370 HMGB1P15-201ENST00000453854 435 ntBASIC4.62□□□□□ -1.67
SMARCA1P28370 RPS26P3-201ENST00000470205 348 ntBASIC4.62□□□□□ -1.67
SMARCA1P28370 AC087312.1-201ENST00000471411 480 ntBASIC4.62□□□□□ -1.67
SMARCA1P28370 AC090543.2-201ENST00000483963 348 ntBASIC4.62□□□□□ -1.67
SMARCA1P28370 AC004057.1-201ENST00000485827 348 ntBASIC4.62□□□□□ -1.67
SMARCA1P28370 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC4.62□□□□□ -1.67
SMARCA1P28370 EGFLAM-AS2-201ENST00000512603 466 ntTSL 5 BASIC4.62□□□□□ -1.67
SMARCA1P28370 RNA5SP154-201ENST00000516193 111 ntBASIC4.62□□□□□ -1.67
SMARCA1P28370 RNU6-430P-201ENST00000517078 107 ntBASIC4.62□□□□□ -1.67
SMARCA1P28370 OR4R3P-201ENST00000525084 838 ntBASIC4.62□□□□□ -1.67
SMARCA1P28370 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC4.62□□□□□ -1.67
SMARCA1P28370 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC4.62□□□□□ -1.67
SMARCA1P28370 AL157394.1-201ENST00000562983 1224 ntBASIC4.62□□□□□ -1.67
SMARCA1P28370 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC4.62□□□□□ -1.67
SMARCA1P28370 HMGN1P30-201ENST00000589286 268 ntBASIC4.62□□□□□ -1.67
SMARCA1P28370 AL139395.1-201ENST00000603662 160 ntBASIC4.62□□□□□ -1.67
SMARCA1P28370 AC007684.1-201ENST00000609671 477 ntBASIC4.62□□□□□ -1.67
SMARCA1P28370 AL139089.1-201ENST00000620372 975 ntBASIC4.62□□□□□ -1.67
SMARCA1P28370 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 108.5 ms