Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 EFTUD1P2-201ENST00000514817 1603 ntBASIC2.54□□□□□ -2
COL5A3P25940 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.54□□□□□ -2
COL5A3P25940 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.54□□□□□ -2
COL5A3P25940 HSPE1P26-201ENST00000405341 275 ntBASIC2.54□□□□□ -2
COL5A3P25940 MTND4LP13-201ENST00000425022 298 ntBASIC2.54□□□□□ -2
COL5A3P25940 TRIAP1P1-201ENST00000427062 225 ntBASIC2.54□□□□□ -2
COL5A3P25940 AC009961.3-201ENST00000449832 765 ntBASIC2.54□□□□□ -2
COL5A3P25940 FABP5P13-201ENST00000452144 328 ntBASIC2.54□□□□□ -2
COL5A3P25940 AC012170.1-201ENST00000495139 359 ntBASIC2.54□□□□□ -2
COL5A3P25940 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC2.54□□□□□ -2
COL5A3P25940 AC005951.1-201ENST00000576706 485 ntBASIC2.54□□□□□ -2
COL5A3P25940 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC2.54□□□□□ -2
COL5A3P25940 AL627309.6-201ENST00000606857 840 ntBASIC2.54□□□□□ -2
COL5A3P25940 AC107905.1-201ENST00000616204 426 ntBASIC2.54□□□□□ -2
COL5A3P25940 SEPT7P7-201ENST00000420492 1301 ntBASIC2.53□□□□□ -2
COL5A3P25940 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC2.53□□□□□ -2
COL5A3P25940 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC2.53□□□□□ -2
COL5A3P25940 MIR489-201ENST00000384923 84 ntBASIC2.53□□□□□ -2
COL5A3P25940 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC2.53□□□□□ -2
COL5A3P25940 TVP23BP2-201ENST00000455082 615 ntBASIC2.53□□□□□ -2
COL5A3P25940 OR52A4P-203ENST00000498233 1014 ntBASIC2.53□□□□□ -2
COL5A3P25940 AC011611.5-201ENST00000552477 578 ntBASIC2.53□□□□□ -2
COL5A3P25940 AC023043.2-201ENST00000589678 1026 ntBASIC2.53□□□□□ -2
COL5A3P25940 AC097717.1-211ENST00000600604 687 ntTSL 5 BASIC2.53□□□□□ -2
COL5A3P25940 AC073348.1-201ENST00000623002 331 ntBASIC2.53□□□□□ -2
COL5A3P25940 AC091953.2-201ENST00000623979 160 ntBASIC2.53□□□□□ -2
COL5A3P25940 FAM35CP-201ENST00000554755 2470 ntBASIC2.52□□□□□ -2.01
COL5A3P25940 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC2.52□□□□□ -2.01
COL5A3P25940 SNORA40.18-201ENST00000391200 128 ntBASIC2.52□□□□□ -2.01
COL5A3P25940 LUZP4P1-201ENST00000415420 344 ntBASIC2.52□□□□□ -2.01
COL5A3P25940 AC093084.1-201ENST00000424233 687 ntBASIC2.52□□□□□ -2.01
COL5A3P25940 AC129850.1-201ENST00000436203 508 ntBASIC2.52□□□□□ -2.01
COL5A3P25940 AL050338.1-201ENST00000445585 786 ntTSL 3 BASIC2.52□□□□□ -2.01
COL5A3P25940 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC2.52□□□□□ -2.01
COL5A3P25940 OR6C72P-201ENST00000451403 892 ntBASIC2.52□□□□□ -2.01
COL5A3P25940 AC008676.3-201ENST00000521237 435 ntBASIC2.52□□□□□ -2.01
COL5A3P25940 AP000889.2-201ENST00000532684 490 ntBASIC2.52□□□□□ -2.01
COL5A3P25940 AL353811.1-201ENST00000602851 736 ntTSL 5 BASIC2.52□□□□□ -2.01
COL5A3P25940 snoU13.31-201ENST00000607291 104 ntBASIC2.52□□□□□ -2.01
COL5A3P25940 LINC02246-204ENST00000625278 740 ntTSL 5 BASIC2.52□□□□□ -2.01
COL5A3P25940 SNORA50A-202ENST00000629536 136 ntBASIC2.52□□□□□ -2.01
COL5A3P25940 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC2.52□□□□□ -2.01
COL5A3P25940 AC114546.3-201ENST00000623582 1734 ntBASIC2.52□□□□□ -2.01
COL5A3P25940 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC2.52□□□□□ -2.01
COL5A3P25940 AC007342.9-201ENST00000623877 1385 ntBASIC2.52□□□□□ -2.01
COL5A3P25940 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.51□□□□□ -2.01
COL5A3P25940 RNU6-457P-201ENST00000363999 107 ntBASIC2.51□□□□□ -2.01
COL5A3P25940 U8.9-201ENST00000365667 134 ntBASIC2.51□□□□□ -2.01
COL5A3P25940 CFHR1-202ENST00000367424 1070 ntTSL 5 BASIC2.51□□□□□ -2.01
COL5A3P25940 AC099336.2-201ENST00000422457 254 ntBASIC2.51□□□□□ -2.01
COL5A3P25940 DEFB122-201ENST00000433453 499 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
COL5A3P25940 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC2.51□□□□□ -2.01
COL5A3P25940 AL358176.1-201ENST00000457477 357 ntTSL 5 BASIC2.51□□□□□ -2.01
COL5A3P25940 AC121764.2-201ENST00000469806 587 ntTSL 2 BASIC2.51□□□□□ -2.01
COL5A3P25940 AC006483.1-201ENST00000487308 313 ntBASIC2.51□□□□□ -2.01
COL5A3P25940 LINC01216-201ENST00000515728 824 ntTSL 5 BASIC2.51□□□□□ -2.01
COL5A3P25940 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
COL5A3P25940 EIF1AXP2-201ENST00000555940 413 ntBASIC2.51□□□□□ -2.01
COL5A3P25940 AC138907.2-201ENST00000561479 866 ntTSL 3 BASIC2.51□□□□□ -2.01
COL5A3P25940 AC145350.4-201ENST00000562827 866 ntTSL 3 BASIC2.51□□□□□ -2.01
COL5A3P25940 AC133485.5-201ENST00000563407 866 ntTSL 3 BASIC2.51□□□□□ -2.01
COL5A3P25940 AC007620.3-201ENST00000608131 497 ntBASIC2.51□□□□□ -2.01
COL5A3P25940 AL592494.3-201ENST00000609485 464 ntBASIC2.51□□□□□ -2.01
COL5A3P25940 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
COL5A3P25940 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC2.51□□□□□ -2.01
COL5A3P25940 RNU4-7P-201ENST00000364758 141 ntBASIC2.51□□□□□ -2.01
COL5A3P25940 Y_RNA.540-201ENST00000384638 111 ntBASIC2.51□□□□□ -2.01
COL5A3P25940 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC2.51□□□□□ -2.01
COL5A3P25940 SDR42E1P3-201ENST00000438345 502 ntBASIC2.51□□□□□ -2.01
COL5A3P25940 AC022431.1-201ENST00000450941 438 ntBASIC2.51□□□□□ -2.01
COL5A3P25940 AC130650.1-201ENST00000570581 415 ntTSL 2 BASIC2.51□□□□□ -2.01
COL5A3P25940 MTATP6P25-201ENST00000574491 261 ntBASIC2.51□□□□□ -2.01
COL5A3P25940 AC098617.1-216ENST00000602099 708 ntTSL 5 BASIC2.51□□□□□ -2.01
COL5A3P25940 GPR34-203ENST00000620846 1282 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
COL5A3P25940 RBM12B-AS1-201ENST00000623283 653 ntBASIC2.51□□□□□ -2.01
COL5A3P25940 AC092447.7-201ENST00000422212 1621 ntBASIC2.51□□□□□ -2.01
COL5A3P25940 AK9-203ENST00000368948 2478 ntTSL 5 BASIC2.5□□□□□ -2.01
COL5A3P25940 LIPI-204ENST00000614229 1439 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
COL5A3P25940 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC2.5□□□□□ -2.01
COL5A3P25940 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
COL5A3P25940 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC2.5□□□□□ -2.01
COL5A3P25940 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC2.5□□□□□ -2.01
COL5A3P25940 AL096701.2-201ENST00000416920 238 ntBASIC2.5□□□□□ -2.01
COL5A3P25940 AC007182.2-201ENST00000489251 402 ntBASIC2.5□□□□□ -2.01
COL5A3P25940 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC2.5□□□□□ -2.01
COL5A3P25940 RNU6-1053P-201ENST00000515930 101 ntBASIC2.5□□□□□ -2.01
COL5A3P25940 SNORD116-26-201ENST00000516006 96 ntBASIC2.5□□□□□ -2.01
COL5A3P25940 RNU6-751P-201ENST00000516382 101 ntBASIC2.5□□□□□ -2.01
COL5A3P25940 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC2.5□□□□□ -2.01
COL5A3P25940 FAM106CP-201ENST00000582212 507 ntBASIC2.5□□□□□ -2.01
COL5A3P25940 NF1P5-201ENST00000588287 448 ntBASIC2.5□□□□□ -2.01
COL5A3P25940 AL353811.1-202ENST00000602614 618 ntTSL 3 BASIC2.5□□□□□ -2.01
COL5A3P25940 RPAP2P1-201ENST00000603626 1168 ntBASIC2.5□□□□□ -2.01
COL5A3P25940 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
COL5A3P25940 RFESDP1-201ENST00000422350 461 ntBASIC2.49□□□□□ -2.01
COL5A3P25940 AC092832.1-201ENST00000422934 400 ntBASIC2.49□□□□□ -2.01
COL5A3P25940 YWHAZP7-201ENST00000436906 631 ntBASIC2.49□□□□□ -2.01
COL5A3P25940 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC2.49□□□□□ -2.01
COL5A3P25940 SNRPGP3-201ENST00000469405 227 ntBASIC2.49□□□□□ -2.01
COL5A3P25940 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC2.49□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 101.3 ms