| MUC1 | P15941 | SNORD88.1-201 | ENST00000408684 | 91 nt | BASIC | 2.56 | □□□□□ -2 | | |
| MUC1 | P15941 | RN7SKP220-201 | ENST00000410611 | 288 nt | BASIC | 2.56 | □□□□□ -2 | | |
| MUC1 | P15941 | RAP1BP1-201 | ENST00000412709 | 553 nt | BASIC | 2.56 | □□□□□ -2 | | |
| MUC1 | P15941 | FCF1P2-201 | ENST00000415284 | 583 nt | BASIC | 2.56 | □□□□□ -2 | | |
| MUC1 | P15941 | AC233981.1-201 | ENST00000423224 | 461 nt | BASIC | 2.56 | □□□□□ -2 | | |
| MUC1 | P15941 | AL122034.1-201 | ENST00000427609 | 497 nt | TSL 2 BASIC | 2.56 | □□□□□ -2 | | |
| MUC1 | P15941 | AC010157.1-201 | ENST00000440589 | 527 nt | TSL 4 BASIC | 2.56 | □□□□□ -2 | | |
| MUC1 | P15941 | OR10R1P-201 | ENST00000441524 | 1141 nt | BASIC | 2.56 | □□□□□ -2 | | |
| MUC1 | P15941 | RPS3AP12-201 | ENST00000443616 | 753 nt | BASIC | 2.56 | □□□□□ -2 | | |
| MUC1 | P15941 | AL358794.1-201 | ENST00000445689 | 381 nt | BASIC | 2.56 | □□□□□ -2 | | |
| MUC1 | P15941 | BBIP1-206 | ENST00000447005 | 727 nt | APPRIS P1 TSL 2 BASIC | 2.56 | □□□□□ -2 | | |
| MUC1 | P15941 | AL009048.1-201 | ENST00000450437 | 298 nt | BASIC | 2.56 | □□□□□ -2 | | |
| MUC1 | P15941 | BX276092.4-201 | ENST00000452056 | 248 nt | BASIC | 2.56 | □□□□□ -2 | | |
| MUC1 | P15941 | AC117465.1-201 | ENST00000457125 | 522 nt | TSL 3 BASIC | 2.56 | □□□□□ -2 | | |
| MUC1 | P15941 | RPL9P33-201 | ENST00000484311 | 566 nt | BASIC | 2.56 | □□□□□ -2 | | |
| MUC1 | P15941 | RPL21P131-201 | ENST00000497298 | 483 nt | BASIC | 2.56 | □□□□□ -2 | | |
| MUC1 | P15941 | AC018752.1-201 | ENST00000507813 | 206 nt | TSL 5 BASIC | 2.56 | □□□□□ -2 | | |
| MUC1 | P15941 | AC139718.1-201 | ENST00000508010 | 300 nt | TSL 5 BASIC | 2.56 | □□□□□ -2 | | |
| MUC1 | P15941 | AC093755.1-201 | ENST00000512950 | 1023 nt | BASIC | 2.56 | □□□□□ -2 | | |
| MUC1 | P15941 | LINC02315-201 | ENST00000515218 | 696 nt | TSL 5 BASIC | 2.56 | □□□□□ -2 | | |
| MUC1 | P15941 | RNU6-415P-201 | ENST00000516252 | 97 nt | BASIC | 2.56 | □□□□□ -2 | | |
| MUC1 | P15941 | RNA5SP135-201 | ENST00000517019 | 125 nt | BASIC | 2.56 | □□□□□ -2 | | |
| MUC1 | P15941 | RN7SKP234-201 | ENST00000517173 | 224 nt | BASIC | 2.56 | □□□□□ -2 | | |
| MUC1 | P15941 | AC022360.2-202 | ENST00000517308 | 407 nt | TSL 3 BASIC | 2.56 | □□□□□ -2 | | |
| MUC1 | P15941 | AC105999.1-201 | ENST00000518722 | 473 nt | TSL 3 BASIC | 2.56 | □□□□□ -2 | | |
| MUC1 | P15941 | AC100871.2-201 | ENST00000522005 | 327 nt | TSL 3 BASIC | 2.56 | □□□□□ -2 | | |
| MUC1 | P15941 | AP000790.1-201 | ENST00000528891 | 737 nt | BASIC | 2.56 | □□□□□ -2 | | |
| MUC1 | P15941 | AC073912.2-201 | ENST00000542821 | 317 nt | TSL 3 BASIC | 2.56 | □□□□□ -2 | | |
| MUC1 | P15941 | AC107016.2-201 | ENST00000547968 | 190 nt | BASIC | 2.56 | □□□□□ -2 | | |
| MUC1 | P15941 | H3F3AP1-201 | ENST00000559984 | 334 nt | BASIC | 2.56 | □□□□□ -2 | | |
| MUC1 | P15941 | AADACP1-206 | ENST00000561502 | 1193 nt | BASIC | 2.56 | □□□□□ -2 | | |
| MUC1 | P15941 | MTCYBP28-201 | ENST00000566728 | 1132 nt | BASIC | 2.56 | □□□□□ -2 | | |
| MUC1 | P15941 | AC022069.1-201 | ENST00000582910 | 658 nt | BASIC | 2.56 | □□□□□ -2 | | |
| MUC1 | P15941 | ZNF28-207 | ENST00000594602 | 684 nt | TSL 5 BASIC | 2.56 | □□□□□ -2 | | |
| MUC1 | P15941 | AL160237.3-201 | ENST00000604114 | 1013 nt | BASIC | 2.56 | □□□□□ -2 | | |
| MUC1 | P15941 | AL157392.4-201 | ENST00000609756 | 345 nt | BASIC | 2.56 | □□□□□ -2 | | |
| MUC1 | P15941 | AL390240.1-201 | ENST00000612950 | 384 nt | BASIC | 2.56 | □□□□□ -2 | | |
| MUC1 | P15941 | AL442067.2-201 | ENST00000614033 | 363 nt | BASIC | 2.56 | □□□□□ -2 | | |
| MUC1 | P15941 | AC022960.3-201 | ENST00000619794 | 441 nt | BASIC | 2.56 | □□□□□ -2 | | |
| MUC1 | P15941 | MIR8057-201 | ENST00000620957 | 69 nt | BASIC | 2.56 | □□□□□ -2 | | |
| MUC1 | P15941 | SATB1-AS1-258 | ENST00000629405 | 664 nt | TSL 5 BASIC | 2.56 | □□□□□ -2 | | |
| MUC1 | P15941 | MFSD8-245 | ENST00000641743 | 948 nt | BASIC | 2.56 | □□□□□ -2 | | |
| MUC1 | P15941 | ASNSP3-201 | ENST00000451989 | 1306 nt | BASIC | 2.56 | □□□□□ -2 | | |
| MUC1 | P15941 | MTND5P31-201 | ENST00000419366 | 1374 nt | BASIC | 2.56 | □□□□□ -2 | | |
| MUC1 | P15941 | TUBD1-214 | ENST00000592426 | 1460 nt | APPRIS P1 TSL 1 (best) BASIC | 2.56 | □□□□□ -2 | | |
| MUC1 | P15941 | YWHAZ-211 | ENST00000457309 | 3007 nt | APPRIS P1 TSL 2 BASIC | 2.56 | □□□□□ -2 | | |
| MUC1 | P15941 | SLC25A46-208 | ENST00000513807 | 1546 nt | TSL 2 BASIC | 2.56 | □□□□□ -2 | | |
| MUC1 | P15941 | UGT2A2-201 | ENST00000604021 | 1544 nt | TSL 1 (best) BASIC | 2.56 | □□□□□ -2 | | |
| MUC1 | P15941 | NUP35-201 | ENST00000295119 | 1633 nt | APPRIS P1 TSL 1 (best) BASIC | 2.56 | □□□□□ -2 | | |
| MUC1 | P15941 | SKP1-209 | ENST00000522552 | 1683 nt | APPRIS ALT1 TSL 1 (best) BASIC | 2.56 | □□□□□ -2 | | |
| MUC1 | P15941 | FMN2-207 | ENST00000545751 | 1913 nt | TSL 5 BASIC | 2.56 | □□□□□ -2 | | |
| MUC1 | P15941 | PIK3C2G-202 | ENST00000433979 | 4840 nt | APPRIS P1 TSL 5 BASIC | 2.56 | □□□□□ -2 | | |
| MUC1 | P15941 | TSHB-201 | ENST00000256592 | 537 nt | APPRIS P1 TSL 5 BASIC | 2.55 | □□□□□ -2 | | |
| MUC1 | P15941 | DIRC1-201 | ENST00000308100 | 1037 nt | APPRIS P1 TSL 1 (best) BASIC | 2.55 | □□□□□ -2 | | |
| MUC1 | P15941 | MIR208A-201 | ENST00000362287 | 71 nt | BASIC | 2.55 | □□□□□ -2 | | |
| MUC1 | P15941 | VTRNA1-1-201 | ENST00000363120 | 99 nt | BASIC | 2.55 | □□□□□ -2 | | |
| MUC1 | P15941 | RNU4-51P-201 | ENST00000364206 | 140 nt | BASIC | 2.55 | □□□□□ -2 | | |
| MUC1 | P15941 | RNU1-109P-201 | ENST00000383960 | 147 nt | BASIC | 2.55 | □□□□□ -2 | | |
| MUC1 | P15941 | SNORD67-201 | ENST00000390833 | 111 nt | BASIC | 2.55 | □□□□□ -2 | | |
| MUC1 | P15941 | CD3D-202 | ENST00000392884 | 476 nt | TSL 2 BASIC | 2.55 | □□□□□ -2 | | |
| MUC1 | P15941 | RPL31P1-201 | ENST00000398116 | 372 nt | BASIC | 2.55 | □□□□□ -2 | | |
| MUC1 | P15941 | AL590004.2-201 | ENST00000404787 | 371 nt | BASIC | 2.55 | □□□□□ -2 | | |
| MUC1 | P15941 | AL133264.1-201 | ENST00000407157 | 562 nt | BASIC | 2.55 | □□□□□ -2 | | |
| MUC1 | P15941 | AC073264.1-201 | ENST00000411508 | 416 nt | BASIC | 2.55 | □□□□□ -2 | | |
| MUC1 | P15941 | AL078590.1-201 | ENST00000412602 | 479 nt | TSL 3 BASIC | 2.55 | □□□□□ -2 | | |
| MUC1 | P15941 | AL136133.1-201 | ENST00000413694 | 376 nt | BASIC | 2.55 | □□□□□ -2 | | |
| MUC1 | P15941 | OR4K6P-201 | ENST00000416478 | 897 nt | BASIC | 2.55 | □□□□□ -2 | | |
| MUC1 | P15941 | AC007161.1-201 | ENST00000418534 | 1061 nt | TSL 3 BASIC | 2.55 | □□□□□ -2 | | |
| MUC1 | P15941 | AL355989.1-202 | ENST00000419406 | 408 nt | TSL 3 BASIC | 2.55 | □□□□□ -2 | | |
| MUC1 | P15941 | OFD1P2Y-201 | ENST00000421895 | 1149 nt | BASIC | 2.55 | □□□□□ -2 | | |
| MUC1 | P15941 | RPL31P54-201 | ENST00000429803 | 370 nt | BASIC | 2.55 | □□□□□ -2 | | |
| MUC1 | P15941 | AC026167.1-201 | ENST00000435651 | 299 nt | TSL 3 BASIC | 2.55 | □□□□□ -2 | | |
| MUC1 | P15941 | MTND5P28-201 | ENST00000438005 | 1594 nt | BASIC | 2.55 | □□□□□ -2 | | |
| MUC1 | P15941 | AL645638.1-201 | ENST00000440519 | 361 nt | BASIC | 2.55 | □□□□□ -2 | | |
| MUC1 | P15941 | Z77249.1-201 | ENST00000444622 | 1175 nt | BASIC | 2.55 | □□□□□ -2 | | |
| MUC1 | P15941 | NUTM2A-AS1-209 | ENST00000447424 | 571 nt | TSL 3 BASIC | 2.55 | □□□□□ -2 | | |
| MUC1 | P15941 | RPL7P52-201 | ENST00000449200 | 742 nt | BASIC | 2.55 | □□□□□ -2 | | |
| MUC1 | P15941 | AC079776.3-201 | ENST00000450665 | 370 nt | BASIC | 2.55 | □□□□□ -2 | | |
| MUC1 | P15941 | snoU13.22-201 | ENST00000459428 | 104 nt | BASIC | 2.55 | □□□□□ -2 | | |
| MUC1 | P15941 | RPL27AP5-201 | ENST00000469428 | 449 nt | BASIC | 2.55 | □□□□□ -2 | | |
| MUC1 | P15941 | AC087879.1-201 | ENST00000474343 | 374 nt | BASIC | 2.55 | □□□□□ -2 | | |
| MUC1 | P15941 | AC079203.1-201 | ENST00000487972 | 404 nt | BASIC | 2.55 | □□□□□ -2 | | |
| MUC1 | P15941 | AC093523.1-201 | ENST00000503268 | 499 nt | TSL 3 BASIC | 2.55 | □□□□□ -2 | | |
| MUC1 | P15941 | AC084024.2-201 | ENST00000503480 | 791 nt | BASIC | 2.55 | □□□□□ -2 | | |
| MUC1 | P15941 | AC099520.1-203 | ENST00000506976 | 464 nt | TSL 3 BASIC | 2.55 | □□□□□ -2 | | |
| MUC1 | P15941 | LINC02428-201 | ENST00000508099 | 527 nt | TSL 5 BASIC | 2.55 | □□□□□ -2 | | |
| MUC1 | P15941 | TPT1P8-201 | ENST00000510120 | 555 nt | BASIC | 2.55 | □□□□□ -2 | | |
| MUC1 | P15941 | TET2-AS1-201 | ENST00000515414 | 537 nt | TSL 5 BASIC | 2.55 | □□□□□ -2 | | |
| MUC1 | P15941 | RN7SKP57-201 | ENST00000517248 | 293 nt | BASIC | 2.55 | □□□□□ -2 | | |
| MUC1 | P15941 | CDKL3-207 | ENST00000521755 | 586 nt | TSL 5 BASIC | 2.55 | □□□□□ -2 | | |
| MUC1 | P15941 | OR10V3P-201 | ENST00000525712 | 725 nt | BASIC | 2.55 | □□□□□ -2 | | |
| MUC1 | P15941 | AL163973.2-201 | ENST00000548096 | 288 nt | TSL 3 BASIC | 2.55 | □□□□□ -2 | | |
| MUC1 | P15941 | AL133372.3-201 | ENST00000553082 | 821 nt | TSL 3 BASIC | 2.55 | □□□□□ -2 | | |
| MUC1 | P15941 | MTCYBP23-201 | ENST00000558717 | 1102 nt | BASIC | 2.55 | □□□□□ -2 | | |
| MUC1 | P15941 | MIR4509-3-201 | ENST00000578671 | 94 nt | BASIC | 2.55 | □□□□□ -2 | | |
| MUC1 | P15941 | MIR4509-2-201 | ENST00000583920 | 94 nt | BASIC | 2.55 | □□□□□ -2 | | |
| MUC1 | P15941 | SNORD39.3-201 | ENST00000584451 | 71 nt | BASIC | 2.55 | □□□□□ -2 | | |
| MUC1 | P15941 | AC007001.1-201 | ENST00000590912 | 670 nt | TSL 5 BASIC | 2.55 | □□□□□ -2 | | |
| MUC1 | P15941 | BNIP3P22-201 | ENST00000593399 | 556 nt | BASIC | 2.55 | □□□□□ -2 | | |
| MUC1 | P15941 | AC006539.2-201 | ENST00000601729 | 572 nt | BASIC | 2.55 | □□□□□ -2 | | |