Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC4.49□□□□□ -1.69
COL3A1P02461 AC044913.1-201ENST00000557200 430 ntBASIC4.49□□□□□ -1.69
COL3A1P02461 WDR61-205ENST00000558459 884 ntTSL 3 BASIC4.49□□□□□ -1.69
COL3A1P02461 AC091489.2-201ENST00000566263 604 ntBASIC4.49□□□□□ -1.69
COL3A1P02461 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC4.49□□□□□ -1.69
COL3A1P02461 CKS1BP3-201ENST00000600888 237 ntBASIC4.49□□□□□ -1.69
COL3A1P02461 AC104458.1-201ENST00000608243 463 ntBASIC4.49□□□□□ -1.69
COL3A1P02461 OR2AT4-202ENST00000641504 8661 ntAPPRIS P1 BASIC4.49□□□□□ -1.69
COL3A1P02461 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC4.49□□□□□ -1.69
COL3A1P02461 AC092326.2-201ENST00000624772 1561 ntBASIC4.49□□□□□ -1.69
COL3A1P02461 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
COL3A1P02461 OFD1P6Y-201ENST00000432335 1637 ntTSL 2 BASIC4.49□□□□□ -1.69
COL3A1P02461 TTTY9B-201ENST00000433794 1637 ntTSL 2 BASIC4.49□□□□□ -1.69
COL3A1P02461 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC4.49□□□□□ -1.69
COL3A1P02461 AP002088.1-201ENST00000382740 395 ntBASIC4.49□□□□□ -1.69
COL3A1P02461 Y_RNA.453-201ENST00000384223 109 ntBASIC4.49□□□□□ -1.69
COL3A1P02461 MIR142-201ENST00000384835 87 ntBASIC4.49□□□□□ -1.69
COL3A1P02461 CIR1P3-201ENST00000405137 479 ntBASIC4.49□□□□□ -1.69
COL3A1P02461 RPL23AP39-201ENST00000415533 405 ntBASIC4.49□□□□□ -1.69
COL3A1P02461 MTCO1P3-201ENST00000429327 192 ntBASIC4.49□□□□□ -1.69
COL3A1P02461 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC4.49□□□□□ -1.69
COL3A1P02461 USP9YP8-201ENST00000441913 500 ntBASIC4.49□□□□□ -1.69
COL3A1P02461 RPL7P36-201ENST00000444633 681 ntBASIC4.49□□□□□ -1.69
COL3A1P02461 AL357552.1-201ENST00000445254 415 ntBASIC4.49□□□□□ -1.69
COL3A1P02461 AL050338.1-201ENST00000445585 786 ntTSL 3 BASIC4.49□□□□□ -1.69
COL3A1P02461 AL591363.1-201ENST00000450091 483 ntBASIC4.49□□□□□ -1.69
COL3A1P02461 HMGB1P5-202ENST00000451497 985 ntBASIC4.49□□□□□ -1.69
COL3A1P02461 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC4.49□□□□□ -1.69
COL3A1P02461 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC4.49□□□□□ -1.69
COL3A1P02461 RPL9P6-201ENST00000492764 598 ntBASIC4.49□□□□□ -1.69
COL3A1P02461 MTND3P22-201ENST00000510932 243 ntBASIC4.49□□□□□ -1.69
COL3A1P02461 SCARNA15.1-201ENST00000516384 125 ntBASIC4.49□□□□□ -1.69
COL3A1P02461 RNU6-875P-201ENST00000516488 106 ntBASIC4.49□□□□□ -1.69
COL3A1P02461 SNORA20.3-201ENST00000516880 132 ntBASIC4.49□□□□□ -1.69
COL3A1P02461 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC4.49□□□□□ -1.69
COL3A1P02461 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC4.49□□□□□ -1.69
COL3A1P02461 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC4.49□□□□□ -1.69
COL3A1P02461 AC116535.2-201ENST00000532365 441 ntTSL 5 BASIC4.49□□□□□ -1.69
COL3A1P02461 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC4.49□□□□□ -1.69
COL3A1P02461 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC4.49□□□□□ -1.69
COL3A1P02461 AL138976.2-201ENST00000563989 694 ntBASIC4.49□□□□□ -1.69
COL3A1P02461 AC141257.3-201ENST00000572906 215 ntBASIC4.49□□□□□ -1.69
COL3A1P02461 AC006504.3-201ENST00000586818 523 ntBASIC4.49□□□□□ -1.69
COL3A1P02461 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC4.49□□□□□ -1.69
COL3A1P02461 AC002553.4-201ENST00000616896 331 ntBASIC4.49□□□□□ -1.69
COL3A1P02461 RMST_9.1-201ENST00000619945 193 ntBASIC4.49□□□□□ -1.69
COL3A1P02461 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
COL3A1P02461 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
COL3A1P02461 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC4.48□□□□□ -1.69
COL3A1P02461 MTND5P1-201ENST00000445440 1375 ntBASIC4.48□□□□□ -1.69
COL3A1P02461 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC4.48□□□□□ -1.69
COL3A1P02461 AL133383.2-201ENST00000622958 2336 ntBASIC4.48□□□□□ -1.69
COL3A1P02461 NAMPTP1-201ENST00000440465 2514 ntBASIC4.48□□□□□ -1.69
COL3A1P02461 LINC00862-204ENST00000637098 1400 ntTSL 5 BASIC4.48□□□□□ -1.69
COL3A1P02461 RNU6-692P-201ENST00000384496 107 ntBASIC4.48□□□□□ -1.69
COL3A1P02461 RNU6-1009P-201ENST00000390996 107 ntBASIC4.48□□□□□ -1.69
COL3A1P02461 HMGB3P18-201ENST00000406327 590 ntBASIC4.48□□□□□ -1.69
COL3A1P02461 AL049649.1-202ENST00000412405 414 ntTSL 3 BASIC4.48□□□□□ -1.69
COL3A1P02461 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC4.48□□□□□ -1.69
COL3A1P02461 OFD1P18Y-201ENST00000420889 959 ntBASIC4.48□□□□□ -1.69
COL3A1P02461 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC4.48□□□□□ -1.69
COL3A1P02461 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC4.48□□□□□ -1.69
COL3A1P02461 AC146507.1-201ENST00000468335 354 ntBASIC4.48□□□□□ -1.69
COL3A1P02461 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC4.48□□□□□ -1.69
COL3A1P02461 AC073522.1-201ENST00000483312 377 ntBASIC4.48□□□□□ -1.69
COL3A1P02461 AC025459.1-201ENST00000504072 156 ntBASIC4.48□□□□□ -1.69
COL3A1P02461 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC4.48□□□□□ -1.69
COL3A1P02461 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC4.48□□□□□ -1.69
COL3A1P02461 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC4.48□□□□□ -1.69
COL3A1P02461 AC025434.1-201ENST00000520705 460 ntTSL 3 BASIC4.48□□□□□ -1.69
COL3A1P02461 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC4.48□□□□□ -1.69
COL3A1P02461 CENPUP1-201ENST00000526649 1202 ntBASIC4.48□□□□□ -1.69
COL3A1P02461 AC005832.3-201ENST00000537929 631 ntBASIC4.48□□□□□ -1.69
COL3A1P02461 AC073487.1-201ENST00000547009 529 ntTSL 4 BASIC4.48□□□□□ -1.69
COL3A1P02461 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC4.48□□□□□ -1.69
COL3A1P02461 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC4.48□□□□□ -1.69
COL3A1P02461 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC4.48□□□□□ -1.69
COL3A1P02461 AC073657.2-201ENST00000605661 303 ntBASIC4.48□□□□□ -1.69
COL3A1P02461 MIR3688-2-201ENST00000636963 87 ntBASIC4.48□□□□□ -1.69
COL3A1P02461 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
COL3A1P02461 AL079343.1-201ENST00000572358 1771 ntBASIC4.48□□□□□ -1.69
COL3A1P02461 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC4.48□□□□□ -1.69
COL3A1P02461 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC4.48□□□□□ -1.69
COL3A1P02461 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
COL3A1P02461 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
COL3A1P02461 CEP170P1-201ENST00000502249 4587 ntBASIC4.47□□□□□ -1.69
COL3A1P02461 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
COL3A1P02461 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
COL3A1P02461 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
COL3A1P02461 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC4.47□□□□□ -1.69
COL3A1P02461 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC4.47□□□□□ -1.69
COL3A1P02461 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
COL3A1P02461 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
COL3A1P02461 RN7SKP226-201ENST00000364912 300 ntBASIC4.47□□□□□ -1.69
COL3A1P02461 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
COL3A1P02461 MT-TD-201ENST00000387419 68 ntBASIC4.47□□□□□ -1.69
COL3A1P02461 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
COL3A1P02461 AL356057.2-201ENST00000403318 432 ntBASIC4.47□□□□□ -1.69
COL3A1P02461 RN7SKP56-201ENST00000410513 331 ntBASIC4.47□□□□□ -1.69
COL3A1P02461 RNA5SP120-201ENST00000410900 112 ntBASIC4.47□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 101.5 ms