Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 VN1R17P-201ENST00000472048 1090 ntBASIC3.19□□□□□ -1.9
MSH4O15457 AP004217.1-201ENST00000480579 346 ntBASIC3.19□□□□□ -1.9
MSH4O15457 AC013828.1-201ENST00000481845 158 ntBASIC3.19□□□□□ -1.9
MSH4O15457 THAP6-203ENST00000502620 582 ntTSL 3 BASIC3.19□□□□□ -1.9
MSH4O15457 MND1-203ENST00000504860 638 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
MSH4O15457 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC3.19□□□□□ -1.9
MSH4O15457 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
MSH4O15457 SNORA31.20-201ENST00000517111 133 ntBASIC3.19□□□□□ -1.9
MSH4O15457 AP003102.1-201ENST00000525638 661 ntBASIC3.19□□□□□ -1.9
MSH4O15457 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
MSH4O15457 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC3.19□□□□□ -1.9
MSH4O15457 AL845331.3-202ENST00000562856 261 ntBASIC3.19□□□□□ -1.9
MSH4O15457 AC012182.1-201ENST00000570133 895 ntBASIC3.19□□□□□ -1.9
MSH4O15457 AC011468.4-201ENST00000603942 409 ntBASIC3.19□□□□□ -1.9
MSH4O15457 AC090115.4-201ENST00000609970 188 ntBASIC3.19□□□□□ -1.9
MSH4O15457 AL590282.1-201ENST00000610379 1136 ntBASIC3.19□□□□□ -1.9
MSH4O15457 AC008083.4-201ENST00000615076 444 ntBASIC3.19□□□□□ -1.9
MSH4O15457 XIST_intron.1-201ENST00000619444 68 ntBASIC3.19□□□□□ -1.9
MSH4O15457 AC006963.1-201ENST00000624003 1052 ntBASIC3.19□□□□□ -1.9
MSH4O15457 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC3.19□□□□□ -1.9
MSH4O15457 DLD-214ENST00000639772 421 ntTSL 5 BASIC3.19□□□□□ -1.9
MSH4O15457 AP001148.1-201ENST00000624124 2359 ntBASIC3.19□□□□□ -1.9
MSH4O15457 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC3.19□□□□□ -1.9
MSH4O15457 AC007256.1-201ENST00000392253 2765 ntBASIC3.18□□□□□ -1.9
MSH4O15457 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.18□□□□□ -1.9
MSH4O15457 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
MSH4O15457 MLLT3-201ENST00000380321 708 ntTSL 3 BASIC3.18□□□□□ -1.9
MSH4O15457 RNU6-657P-201ENST00000383904 107 ntBASIC3.18□□□□□ -1.9
MSH4O15457 AL079342.2-201ENST00000403367 482 ntBASIC3.18□□□□□ -1.9
MSH4O15457 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC3.18□□□□□ -1.9
MSH4O15457 RNU2-28P-201ENST00000410457 189 ntBASIC3.18□□□□□ -1.9
MSH4O15457 OFD1P1Y-201ENST00000411756 1225 ntBASIC3.18□□□□□ -1.9
MSH4O15457 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC3.18□□□□□ -1.9
MSH4O15457 DPRXP1-201ENST00000426312 460 ntBASIC3.18□□□□□ -1.9
MSH4O15457 MTCO1P3-201ENST00000429327 192 ntBASIC3.18□□□□□ -1.9
MSH4O15457 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC3.18□□□□□ -1.9
MSH4O15457 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC3.18□□□□□ -1.9
MSH4O15457 RPS29P6-201ENST00000438196 145 ntBASIC3.18□□□□□ -1.9
MSH4O15457 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC3.18□□□□□ -1.9
MSH4O15457 SNORA59A-201ENST00000459326 152 ntBASIC3.18□□□□□ -1.9
MSH4O15457 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC3.18□□□□□ -1.9
MSH4O15457 HMGB3P15-201ENST00000507326 574 ntBASIC3.18□□□□□ -1.9
MSH4O15457 AC119751.5-201ENST00000514077 770 ntBASIC3.18□□□□□ -1.9
MSH4O15457 AC084706.1-201ENST00000521879 558 ntTSL 2 BASIC3.18□□□□□ -1.9
MSH4O15457 DEFB130C-202ENST00000530001 230 ntBASIC3.18□□□□□ -1.9
MSH4O15457 AP000889.1-201ENST00000530968 660 ntBASIC3.18□□□□□ -1.9
MSH4O15457 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC3.18□□□□□ -1.9
MSH4O15457 ATF7IP2-206ENST00000543967 998 ntTSL 2 BASIC3.18□□□□□ -1.9
MSH4O15457 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC3.18□□□□□ -1.9
MSH4O15457 AC090502.2-201ENST00000549267 280 ntBASIC3.18□□□□□ -1.9
MSH4O15457 AC008127.2-201ENST00000549925 1075 ntBASIC3.18□□□□□ -1.9
MSH4O15457 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC3.18□□□□□ -1.9
MSH4O15457 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC3.18□□□□□ -1.9
MSH4O15457 AC128687.1-201ENST00000605304 619 ntBASIC3.18□□□□□ -1.9
MSH4O15457 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC3.18□□□□□ -1.9
MSH4O15457 AC107294.3-201ENST00000609211 526 ntBASIC3.18□□□□□ -1.9
MSH4O15457 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC3.18□□□□□ -1.9
MSH4O15457 AC006023.2-201ENST00000609916 167 ntBASIC3.18□□□□□ -1.9
MSH4O15457 AL020991.1-201ENST00000612314 373 ntBASIC3.18□□□□□ -1.9
MSH4O15457 AL157770.1-201ENST00000623049 439 ntBASIC3.18□□□□□ -1.9
MSH4O15457 AC040168.1-201ENST00000623594 991 ntBASIC3.18□□□□□ -1.9
MSH4O15457 ZNF663P-202ENST00000641770 1131 ntBASIC3.18□□□□□ -1.9
MSH4O15457 AC092593.1-201ENST00000515413 1815 ntBASIC3.18□□□□□ -1.9
MSH4O15457 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
MSH4O15457 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
MSH4O15457 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
MSH4O15457 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.17□□□□□ -1.9
MSH4O15457 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.17□□□□□ -1.9
MSH4O15457 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC3.17□□□□□ -1.9
MSH4O15457 Z99496.1-201ENST00000469424 1477 ntBASIC3.17□□□□□ -1.9
MSH4O15457 MUC15-204ENST00000527569 1386 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
MSH4O15457 OR8B3-201ENST00000354597 942 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
MSH4O15457 OR8B2-201ENST00000375013 942 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
MSH4O15457 SUGT1P1-201ENST00000379514 476 ntBASIC3.17□□□□□ -1.9
MSH4O15457 RNU6-298P-201ENST00000390888 96 ntBASIC3.17□□□□□ -1.9
MSH4O15457 RNU6-1000P-201ENST00000391066 106 ntBASIC3.17□□□□□ -1.9
MSH4O15457 EIF4EBP2P3-201ENST00000403144 334 ntBASIC3.17□□□□□ -1.9
MSH4O15457 RAD23BP2-201ENST00000416003 1207 ntBASIC3.17□□□□□ -1.9
MSH4O15457 MTND4P3-201ENST00000417829 541 ntBASIC3.17□□□□□ -1.9
MSH4O15457 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC3.17□□□□□ -1.9
MSH4O15457 SEPT7P5-201ENST00000434048 306 ntBASIC3.17□□□□□ -1.9
MSH4O15457 HMGB1P12-201ENST00000438594 598 ntBASIC3.17□□□□□ -1.9
MSH4O15457 RPS24P13-201ENST00000442520 397 ntBASIC3.17□□□□□ -1.9
MSH4O15457 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC3.17□□□□□ -1.9
MSH4O15457 RPS24P6-201ENST00000452670 400 ntBASIC3.17□□□□□ -1.9
MSH4O15457 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC3.17□□□□□ -1.9
MSH4O15457 RPS20P24-201ENST00000457473 361 ntBASIC3.17□□□□□ -1.9
MSH4O15457 RPL21P104-201ENST00000464143 478 ntBASIC3.17□□□□□ -1.9
MSH4O15457 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
MSH4O15457 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC3.17□□□□□ -1.9
MSH4O15457 AC093248.1-201ENST00000513197 417 ntTSL 2 BASIC3.17□□□□□ -1.9
MSH4O15457 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC3.17□□□□□ -1.9
MSH4O15457 AC026801.2-201ENST00000515352 425 ntBASIC3.17□□□□□ -1.9
MSH4O15457 TRAV37-201ENST00000553906 342 ntBASIC3.17□□□□□ -1.9
MSH4O15457 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC3.17□□□□□ -1.9
MSH4O15457 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC3.17□□□□□ -1.9
MSH4O15457 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC3.17□□□□□ -1.9
MSH4O15457 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC3.17□□□□□ -1.9
MSH4O15457 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC3.17□□□□□ -1.9
MSH4O15457 AC083760.1-201ENST00000589621 670 ntBASIC3.17□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 144.4 ms