Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 ACTR3BP1-201ENST00000605584 1247 ntBASIC3.72□□□□□ -1.81
CPSF3Q9UKF6 AC245297.2-201ENST00000610119 565 ntBASIC3.72□□□□□ -1.81
CPSF3Q9UKF6 AC087683.2-201ENST00000611384 326 ntBASIC3.72□□□□□ -1.81
CPSF3Q9UKF6 AC009159.2-201ENST00000617603 606 ntBASIC3.72□□□□□ -1.81
CPSF3Q9UKF6 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC3.72□□□□□ -1.81
CPSF3Q9UKF6 AC127502.3-201ENST00000636170 1206 ntBASIC3.72□□□□□ -1.81
CPSF3Q9UKF6 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
CPSF3Q9UKF6 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
CPSF3Q9UKF6 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
CPSF3Q9UKF6 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
CPSF3Q9UKF6 AC244517.1-201ENST00000606030 2086 ntBASIC3.72□□□□□ -1.81
CPSF3Q9UKF6 AL390862.1-201ENST00000635467 1469 ntBASIC3.72□□□□□ -1.81
CPSF3Q9UKF6 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.72□□□□□ -1.81
CPSF3Q9UKF6 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.71□□□□□ -1.82
CPSF3Q9UKF6 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC3.71□□□□□ -1.82
CPSF3Q9UKF6 RNU6-1249P-201ENST00000363237 111 ntBASIC3.71□□□□□ -1.82
CPSF3Q9UKF6 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC3.71□□□□□ -1.82
CPSF3Q9UKF6 RSL24D1P4-201ENST00000400938 484 ntBASIC3.71□□□□□ -1.82
CPSF3Q9UKF6 MTND4P13-201ENST00000402078 1023 ntBASIC3.71□□□□□ -1.82
CPSF3Q9UKF6 AL136116.1-201ENST00000403591 381 ntBASIC3.71□□□□□ -1.82
CPSF3Q9UKF6 AC007390.1-201ENST00000415722 356 ntBASIC3.71□□□□□ -1.82
CPSF3Q9UKF6 HSFY4P-201ENST00000415994 1181 ntBASIC3.71□□□□□ -1.82
CPSF3Q9UKF6 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC3.71□□□□□ -1.82
CPSF3Q9UKF6 AL451062.2-201ENST00000427515 271 ntBASIC3.71□□□□□ -1.82
CPSF3Q9UKF6 AL512658.1-201ENST00000449072 533 ntTSL 3 BASIC3.71□□□□□ -1.82
CPSF3Q9UKF6 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC3.71□□□□□ -1.82
CPSF3Q9UKF6 BTF3P5-201ENST00000457252 467 ntBASIC3.71□□□□□ -1.82
CPSF3Q9UKF6 RPS20P24-201ENST00000457473 361 ntBASIC3.71□□□□□ -1.82
CPSF3Q9UKF6 AL049830.2-201ENST00000480072 201 ntBASIC3.71□□□□□ -1.82
CPSF3Q9UKF6 FCF1P8-201ENST00000510322 597 ntBASIC3.71□□□□□ -1.82
CPSF3Q9UKF6 AC026412.2-201ENST00000512270 1075 ntBASIC3.71□□□□□ -1.82
CPSF3Q9UKF6 RNA5SP468-201ENST00000516782 93 ntBASIC3.71□□□□□ -1.82
CPSF3Q9UKF6 OR5AK1P-201ENST00000524837 922 ntBASIC3.71□□□□□ -1.82
CPSF3Q9UKF6 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.71□□□□□ -1.82
CPSF3Q9UKF6 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC3.71□□□□□ -1.82
CPSF3Q9UKF6 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC3.71□□□□□ -1.82
CPSF3Q9UKF6 MIR3186-201ENST00000577404 85 ntBASIC3.71□□□□□ -1.82
CPSF3Q9UKF6 MIR5047-201ENST00000579212 100 ntBASIC3.71□□□□□ -1.82
CPSF3Q9UKF6 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC3.71□□□□□ -1.82
CPSF3Q9UKF6 AC092296.3-201ENST00000589968 249 ntTSL 3 BASIC3.71□□□□□ -1.82
CPSF3Q9UKF6 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC3.71□□□□□ -1.82
CPSF3Q9UKF6 VN1R78P-201ENST00000597393 564 ntBASIC3.71□□□□□ -1.82
CPSF3Q9UKF6 AC006557.5-201ENST00000603126 811 ntBASIC3.71□□□□□ -1.82
CPSF3Q9UKF6 AC011468.4-201ENST00000603942 409 ntBASIC3.71□□□□□ -1.82
CPSF3Q9UKF6 AC006270.3-201ENST00000605967 1036 ntBASIC3.71□□□□□ -1.82
CPSF3Q9UKF6 TUSC7.1-201ENST00000610969 165 ntBASIC3.71□□□□□ -1.82
CPSF3Q9UKF6 AL139418.1-201ENST00000613613 177 ntBASIC3.71□□□□□ -1.82
CPSF3Q9UKF6 AC025588.4-201ENST00000615802 908 ntBASIC3.71□□□□□ -1.82
CPSF3Q9UKF6 AC140725.3-201ENST00000616193 880 ntBASIC3.71□□□□□ -1.82
CPSF3Q9UKF6 AC021755.4-201ENST00000616620 456 ntBASIC3.71□□□□□ -1.82
CPSF3Q9UKF6 AP000770.2-201ENST00000623694 100 ntBASIC3.71□□□□□ -1.82
CPSF3Q9UKF6 AC004777.1-201ENST00000624317 287 ntBASIC3.71□□□□□ -1.82
CPSF3Q9UKF6 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC3.71□□□□□ -1.82
CPSF3Q9UKF6 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
CPSF3Q9UKF6 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
CPSF3Q9UKF6 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC3.71□□□□□ -1.82
CPSF3Q9UKF6 OR5BR1P-201ENST00000524992 1330 ntBASIC3.7□□□□□ -1.82
CPSF3Q9UKF6 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC3.7□□□□□ -1.82
CPSF3Q9UKF6 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
CPSF3Q9UKF6 RPL30P2-201ENST00000414021 291 ntBASIC3.7□□□□□ -1.82
CPSF3Q9UKF6 AC012065.2-201ENST00000421295 375 ntBASIC3.7□□□□□ -1.82
CPSF3Q9UKF6 GLRXP1-201ENST00000423261 334 ntBASIC3.7□□□□□ -1.82
CPSF3Q9UKF6 AC005019.1-201ENST00000436455 431 ntBASIC3.7□□□□□ -1.82
CPSF3Q9UKF6 RPL23AP74-201ENST00000437246 471 ntBASIC3.7□□□□□ -1.82
CPSF3Q9UKF6 AC003001.1-201ENST00000443247 1135 ntTSL 5 BASIC3.7□□□□□ -1.82
CPSF3Q9UKF6 RPS4XP10-201ENST00000465034 731 ntBASIC3.7□□□□□ -1.82
CPSF3Q9UKF6 RPL21P13-201ENST00000488305 481 ntBASIC3.7□□□□□ -1.82
CPSF3Q9UKF6 NAA50-206ENST00000493454 964 ntTSL 2 BASIC3.7□□□□□ -1.82
CPSF3Q9UKF6 MTCYBP35-201ENST00000503630 1137 ntBASIC3.7□□□□□ -1.82
CPSF3Q9UKF6 AC114981.1-201ENST00000503897 678 ntBASIC3.7□□□□□ -1.82
CPSF3Q9UKF6 RNU6-27P-201ENST00000516146 107 ntBASIC3.7□□□□□ -1.82
CPSF3Q9UKF6 SNORA70.19-201ENST00000516717 90 ntBASIC3.7□□□□□ -1.82
CPSF3Q9UKF6 DEFB131D-201ENST00000526803 184 ntBASIC3.7□□□□□ -1.82
CPSF3Q9UKF6 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC3.7□□□□□ -1.82
CPSF3Q9UKF6 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC3.7□□□□□ -1.82
CPSF3Q9UKF6 AL356022.1-201ENST00000557465 483 ntTSL 5 BASIC3.7□□□□□ -1.82
CPSF3Q9UKF6 CYCSP2-201ENST00000558168 301 ntBASIC3.7□□□□□ -1.82
CPSF3Q9UKF6 AL354943.1-201ENST00000572103 781 ntBASIC3.7□□□□□ -1.82
CPSF3Q9UKF6 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC3.7□□□□□ -1.82
CPSF3Q9UKF6 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC3.7□□□□□ -1.82
CPSF3Q9UKF6 ELOCP35-201ENST00000604289 336 ntBASIC3.7□□□□□ -1.82
CPSF3Q9UKF6 XIST_intron.1-201ENST00000619444 68 ntBASIC3.7□□□□□ -1.82
CPSF3Q9UKF6 RBM12B-AS1-201ENST00000623283 653 ntBASIC3.7□□□□□ -1.82
CPSF3Q9UKF6 AP002791.1-201ENST00000623291 381 ntBASIC3.7□□□□□ -1.82
CPSF3Q9UKF6 AP000676.4-201ENST00000624659 623 ntBASIC3.7□□□□□ -1.82
CPSF3Q9UKF6 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC3.7□□□□□ -1.82
CPSF3Q9UKF6 U6.98-201ENST00000637157 84 ntBASIC3.7□□□□□ -1.82
CPSF3Q9UKF6 AC005539.1-201ENST00000443768 1479 ntBASIC3.7□□□□□ -1.82
CPSF3Q9UKF6 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
CPSF3Q9UKF6 AC091152.2-201ENST00000591628 2569 ntBASIC3.7□□□□□ -1.82
CPSF3Q9UKF6 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.7□□□□□ -1.82
CPSF3Q9UKF6 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
CPSF3Q9UKF6 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
CPSF3Q9UKF6 RNA5SP197-201ENST00000363357 119 ntBASIC3.69□□□□□ -1.82
CPSF3Q9UKF6 RNU6-1214P-201ENST00000363650 109 ntBASIC3.69□□□□□ -1.82
CPSF3Q9UKF6 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
CPSF3Q9UKF6 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
CPSF3Q9UKF6 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC3.69□□□□□ -1.82
CPSF3Q9UKF6 HMGB1P17-201ENST00000403495 628 ntBASIC3.69□□□□□ -1.82
CPSF3Q9UKF6 RNA5SP129-201ENST00000410276 118 ntBASIC3.69□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 175 ms