Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC5.54□□□□□ -1.52
CCDC39Q9UFE4 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC5.53□□□□□ -1.52
CCDC39Q9UFE4 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC39Q9UFE4 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC39Q9UFE4 AC109780.1-201ENST00000451768 1344 ntBASIC5.53□□□□□ -1.52
CCDC39Q9UFE4 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC39Q9UFE4 RNU6-289P-201ENST00000364093 107 ntBASIC5.53□□□□□ -1.52
CCDC39Q9UFE4 Y_RNA.255-201ENST00000364581 97 ntBASIC5.53□□□□□ -1.52
CCDC39Q9UFE4 Y_RNA.301-201ENST00000364990 103 ntBASIC5.53□□□□□ -1.52
CCDC39Q9UFE4 Y_RNA.339-201ENST00000365325 102 ntBASIC5.53□□□□□ -1.52
CCDC39Q9UFE4 SET-203ENST00000372688 801 ntTSL 2 BASIC5.53□□□□□ -1.52
CCDC39Q9UFE4 RNU1-106P-201ENST00000384382 164 ntBASIC5.53□□□□□ -1.52
CCDC39Q9UFE4 AL359634.1-202ENST00000404721 284 ntBASIC5.53□□□□□ -1.52
CCDC39Q9UFE4 BTBD10P2-201ENST00000404779 676 ntBASIC5.53□□□□□ -1.52
CCDC39Q9UFE4 AC127526.1-201ENST00000417526 366 ntBASIC5.53□□□□□ -1.52
CCDC39Q9UFE4 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC39Q9UFE4 RHOT1P3-201ENST00000436571 331 ntBASIC5.53□□□□□ -1.52
CCDC39Q9UFE4 AL031663.1-201ENST00000437445 219 ntBASIC5.53□□□□□ -1.52
CCDC39Q9UFE4 RSU1P2-202ENST00000437884 485 ntBASIC5.53□□□□□ -1.52
CCDC39Q9UFE4 PRPF38AP2-201ENST00000438179 851 ntBASIC5.53□□□□□ -1.52
CCDC39Q9UFE4 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC5.53□□□□□ -1.52
CCDC39Q9UFE4 SBDSP1-204ENST00000453858 737 ntBASIC5.53□□□□□ -1.52
CCDC39Q9UFE4 BX284632.1-201ENST00000478218 541 ntBASIC5.53□□□□□ -1.52
CCDC39Q9UFE4 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC5.53□□□□□ -1.52
CCDC39Q9UFE4 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC39Q9UFE4 TMEM248P1-201ENST00000510579 951 ntBASIC5.53□□□□□ -1.52
CCDC39Q9UFE4 RN7SKP147-201ENST00000517154 244 ntBASIC5.53□□□□□ -1.52
CCDC39Q9UFE4 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC39Q9UFE4 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC5.53□□□□□ -1.52
CCDC39Q9UFE4 OR5B10P-201ENST00000532869 642 ntBASIC5.53□□□□□ -1.52
CCDC39Q9UFE4 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC5.53□□□□□ -1.52
CCDC39Q9UFE4 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC5.53□□□□□ -1.52
CCDC39Q9UFE4 LINC01619-209ENST00000552277 571 ntTSL 4 BASIC5.53□□□□□ -1.52
CCDC39Q9UFE4 AC093519.1-201ENST00000566109 298 ntBASIC5.53□□□□□ -1.52
CCDC39Q9UFE4 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC5.53□□□□□ -1.52
CCDC39Q9UFE4 VN1R84P-201ENST00000593697 235 ntBASIC5.53□□□□□ -1.52
CCDC39Q9UFE4 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC5.53□□□□□ -1.52
CCDC39Q9UFE4 PSMA6P4-201ENST00000603247 718 ntBASIC5.53□□□□□ -1.52
CCDC39Q9UFE4 AC022893.3-201ENST00000607665 437 ntBASIC5.53□□□□□ -1.52
CCDC39Q9UFE4 PSG7-202ENST00000446844 2227 ntAPPRIS P5 TSL 5 BASIC5.53□□□□□ -1.52
CCDC39Q9UFE4 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC5.53□□□□□ -1.52
CCDC39Q9UFE4 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC39Q9UFE4 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC5.53□□□□□ -1.52
CCDC39Q9UFE4 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC5.52□□□□□ -1.53
CCDC39Q9UFE4 AC092821.1-201ENST00000640129 4180 ntAPPRIS P1 TSL 5 BASIC5.52□□□□□ -1.53
CCDC39Q9UFE4 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
CCDC39Q9UFE4 AP000756.2-201ENST00000624168 2567 ntBASIC5.52□□□□□ -1.53
CCDC39Q9UFE4 Y_RNA.46-201ENST00000362695 102 ntBASIC5.52□□□□□ -1.53
CCDC39Q9UFE4 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC5.52□□□□□ -1.53
CCDC39Q9UFE4 SNORA20.2-201ENST00000383922 131 ntBASIC5.52□□□□□ -1.53
CCDC39Q9UFE4 RNU6-26P-201ENST00000383985 107 ntBASIC5.52□□□□□ -1.53
CCDC39Q9UFE4 MIR765-201ENST00000390226 114 ntBASIC5.52□□□□□ -1.53
CCDC39Q9UFE4 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
CCDC39Q9UFE4 AL590290.1-201ENST00000405336 380 ntBASIC5.52□□□□□ -1.53
CCDC39Q9UFE4 RNU6ATAC7P-201ENST00000408111 127 ntBASIC5.52□□□□□ -1.53
CCDC39Q9UFE4 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC5.52□□□□□ -1.53
CCDC39Q9UFE4 RNU6-370P-201ENST00000411008 104 ntBASIC5.52□□□□□ -1.53
CCDC39Q9UFE4 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC5.52□□□□□ -1.53
CCDC39Q9UFE4 VDAC1P9-201ENST00000412766 841 ntBASIC5.52□□□□□ -1.53
CCDC39Q9UFE4 AC093162.1-201ENST00000419682 124 ntBASIC5.52□□□□□ -1.53
CCDC39Q9UFE4 AL359853.3-201ENST00000423879 544 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
CCDC39Q9UFE4 ERLEC1P1-201ENST00000433806 578 ntBASIC5.52□□□□□ -1.53
CCDC39Q9UFE4 CBX1P4-201ENST00000439415 457 ntBASIC5.52□□□□□ -1.53
CCDC39Q9UFE4 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC5.52□□□□□ -1.53
CCDC39Q9UFE4 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC5.52□□□□□ -1.53
CCDC39Q9UFE4 MRPS31P2-201ENST00000451581 518 ntBASIC5.52□□□□□ -1.53
CCDC39Q9UFE4 MTND3P16-201ENST00000452205 344 ntBASIC5.52□□□□□ -1.53
CCDC39Q9UFE4 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC5.52□□□□□ -1.53
CCDC39Q9UFE4 APOOP2-201ENST00000461561 539 ntBASIC5.52□□□□□ -1.53
CCDC39Q9UFE4 RPL7P22-201ENST00000466005 733 ntBASIC5.52□□□□□ -1.53
CCDC39Q9UFE4 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC5.52□□□□□ -1.53
CCDC39Q9UFE4 TM4SF1-AS1-201ENST00000484046 488 ntTSL 3 BASIC5.52□□□□□ -1.53
CCDC39Q9UFE4 RN7SL629P-201ENST00000489622 285 ntBASIC5.52□□□□□ -1.53
CCDC39Q9UFE4 AC005912.1-201ENST00000495392 255 ntBASIC5.52□□□□□ -1.53
CCDC39Q9UFE4 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC5.52□□□□□ -1.53
CCDC39Q9UFE4 OR5M2P-201ENST00000529003 936 ntBASIC5.52□□□□□ -1.53
CCDC39Q9UFE4 CYCSP28-201ENST00000534284 321 ntBASIC5.52□□□□□ -1.53
CCDC39Q9UFE4 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC5.52□□□□□ -1.53
CCDC39Q9UFE4 LINC01580-201ENST00000555255 561 ntTSL 4 BASIC5.52□□□□□ -1.53
CCDC39Q9UFE4 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC5.52□□□□□ -1.53
CCDC39Q9UFE4 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC5.52□□□□□ -1.53
CCDC39Q9UFE4 SNORA74C-1-201ENST00000580726 201 ntBASIC5.52□□□□□ -1.53
CCDC39Q9UFE4 AC011444.3-201ENST00000588342 325 ntTSL 3 BASIC5.52□□□□□ -1.53
CCDC39Q9UFE4 IGKV2OR2-2-201ENST00000605025 300 ntBASIC5.52□□□□□ -1.53
CCDC39Q9UFE4 RNU6-89P-201ENST00000606519 100 ntBASIC5.52□□□□□ -1.53
CCDC39Q9UFE4 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC5.52□□□□□ -1.53
CCDC39Q9UFE4 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC5.52□□□□□ -1.53
CCDC39Q9UFE4 AC083806.3-201ENST00000614016 455 ntBASIC5.52□□□□□ -1.53
CCDC39Q9UFE4 AL157817.1-201ENST00000614264 790 ntBASIC5.52□□□□□ -1.53
CCDC39Q9UFE4 NAA50-211ENST00000630058 177 ntTSL 5 BASIC5.52□□□□□ -1.53
CCDC39Q9UFE4 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC5.52□□□□□ -1.53
CCDC39Q9UFE4 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC5.52□□□□□ -1.53
CCDC39Q9UFE4 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC5.52□□□□□ -1.53
CCDC39Q9UFE4 AC024337.2-201ENST00000616608 2797 ntTSL 5 BASIC5.52□□□□□ -1.53
CCDC39Q9UFE4 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC5.52□□□□□ -1.53
CCDC39Q9UFE4 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC5.52□□□□□ -1.53
CCDC39Q9UFE4 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC39Q9UFE4 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC5.51□□□□□ -1.53
CCDC39Q9UFE4 AC008758.3-201ENST00000507003 1829 ntBASIC5.51□□□□□ -1.53
CCDC39Q9UFE4 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 134.4 ms