Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC3.48□□□□□ -1.85
VPS54Q9P1Q0 AC109635.4-202ENST00000531666 412 ntBASIC3.48□□□□□ -1.85
VPS54Q9P1Q0 SMILR-201ENST00000533992 553 ntTSL 4 BASIC3.48□□□□□ -1.85
VPS54Q9P1Q0 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC3.48□□□□□ -1.85
VPS54Q9P1Q0 MIR3690-201ENST00000580266 75 ntBASIC3.48□□□□□ -1.85
VPS54Q9P1Q0 AC015688.2-201ENST00000584523 262 ntBASIC3.48□□□□□ -1.85
VPS54Q9P1Q0 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC3.48□□□□□ -1.85
VPS54Q9P1Q0 AC006539.2-201ENST00000601729 572 ntBASIC3.48□□□□□ -1.85
VPS54Q9P1Q0 AP001521.1-201ENST00000609150 300 ntBASIC3.48□□□□□ -1.85
VPS54Q9P1Q0 AC006023.2-201ENST00000609916 167 ntBASIC3.48□□□□□ -1.85
VPS54Q9P1Q0 AL138478.1-201ENST00000612252 832 ntBASIC3.48□□□□□ -1.85
VPS54Q9P1Q0 ATP5A1P2-202ENST00000616464 443 ntBASIC3.48□□□□□ -1.85
VPS54Q9P1Q0 AC009318.4-201ENST00000620496 486 ntBASIC3.48□□□□□ -1.85
VPS54Q9P1Q0 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
VPS54Q9P1Q0 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC3.48□□□□□ -1.85
VPS54Q9P1Q0 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.48□□□□□ -1.85
VPS54Q9P1Q0 AP001350.1-201ENST00000601906 1524 ntBASIC3.48□□□□□ -1.85
VPS54Q9P1Q0 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC3.48□□□□□ -1.85
VPS54Q9P1Q0 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC3.48□□□□□ -1.85
VPS54Q9P1Q0 AC005183.1-201ENST00000603687 1979 ntBASIC3.47□□□□□ -1.85
VPS54Q9P1Q0 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
VPS54Q9P1Q0 RNU6-1249P-201ENST00000363237 111 ntBASIC3.47□□□□□ -1.85
VPS54Q9P1Q0 STATH-202ENST00000381060 534 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
VPS54Q9P1Q0 ARF4P3-201ENST00000397387 509 ntBASIC3.47□□□□□ -1.85
VPS54Q9P1Q0 RPL31P1-201ENST00000398116 372 ntBASIC3.47□□□□□ -1.85
VPS54Q9P1Q0 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC3.47□□□□□ -1.85
VPS54Q9P1Q0 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
VPS54Q9P1Q0 RPL7P44-201ENST00000424827 742 ntBASIC3.47□□□□□ -1.85
VPS54Q9P1Q0 RPL21P66-201ENST00000426566 466 ntBASIC3.47□□□□□ -1.85
VPS54Q9P1Q0 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC3.47□□□□□ -1.85
VPS54Q9P1Q0 AL590103.1-201ENST00000434488 307 ntBASIC3.47□□□□□ -1.85
VPS54Q9P1Q0 AL034418.1-201ENST00000448675 860 ntBASIC3.47□□□□□ -1.85
VPS54Q9P1Q0 LINC01075-201ENST00000455977 370 ntTSL 3 BASIC3.47□□□□□ -1.85
VPS54Q9P1Q0 AC010285.1-201ENST00000470580 392 ntBASIC3.47□□□□□ -1.85
VPS54Q9P1Q0 AC112178.1-201ENST00000511165 676 ntTSL 3 BASIC3.47□□□□□ -1.85
VPS54Q9P1Q0 AC012625.1-201ENST00000515153 625 ntTSL 5 BASIC3.47□□□□□ -1.85
VPS54Q9P1Q0 RNU6-1261P-201ENST00000517194 104 ntBASIC3.47□□□□□ -1.85
VPS54Q9P1Q0 AC027309.2-201ENST00000520566 192 ntBASIC3.47□□□□□ -1.85
VPS54Q9P1Q0 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC3.47□□□□□ -1.85
VPS54Q9P1Q0 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC3.47□□□□□ -1.85
VPS54Q9P1Q0 AC010198.2-201ENST00000550612 259 ntBASIC3.47□□□□□ -1.85
VPS54Q9P1Q0 AL121603.1-201ENST00000553815 142 ntBASIC3.47□□□□□ -1.85
VPS54Q9P1Q0 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC3.47□□□□□ -1.85
VPS54Q9P1Q0 LARP7P2-201ENST00000575306 125 ntBASIC3.47□□□□□ -1.85
VPS54Q9P1Q0 MIR4509-3-201ENST00000578671 94 ntBASIC3.47□□□□□ -1.85
VPS54Q9P1Q0 MIR4509-2-201ENST00000583920 94 ntBASIC3.47□□□□□ -1.85
VPS54Q9P1Q0 VN1R83P-201ENST00000595685 445 ntBASIC3.47□□□□□ -1.85
VPS54Q9P1Q0 AF230666.1-202ENST00000608375 870 ntTSL 5 BASIC3.47□□□□□ -1.85
VPS54Q9P1Q0 AC024933.1-201ENST00000608472 348 ntBASIC3.47□□□□□ -1.85
VPS54Q9P1Q0 AC006329.2-201ENST00000611491 394 ntBASIC3.47□□□□□ -1.85
VPS54Q9P1Q0 MIR4509-1-201ENST00000618224 94 ntBASIC3.47□□□□□ -1.85
VPS54Q9P1Q0 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC3.46□□□□□ -1.85
VPS54Q9P1Q0 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
VPS54Q9P1Q0 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.46□□□□□ -1.86
VPS54Q9P1Q0 RPL23AP57-201ENST00000332361 466 ntBASIC3.46□□□□□ -1.86
VPS54Q9P1Q0 MIR422A-201ENST00000362286 90 ntBASIC3.46□□□□□ -1.86
VPS54Q9P1Q0 RNU6-1181P-201ENST00000384191 106 ntBASIC3.46□□□□□ -1.86
VPS54Q9P1Q0 RNU6-821P-201ENST00000390995 107 ntBASIC3.46□□□□□ -1.86
VPS54Q9P1Q0 RPL21P3-201ENST00000395517 478 ntBASIC3.46□□□□□ -1.86
VPS54Q9P1Q0 SLC9B1P2-201ENST00000398120 1184 ntBASIC3.46□□□□□ -1.86
VPS54Q9P1Q0 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
VPS54Q9P1Q0 UBE2Q2P12-201ENST00000414573 204 ntBASIC3.46□□□□□ -1.86
VPS54Q9P1Q0 Z75741.2-201ENST00000417272 1167 ntBASIC3.46□□□□□ -1.86
VPS54Q9P1Q0 AL391839.1-201ENST00000417447 265 ntTSL 2 BASIC3.46□□□□□ -1.86
VPS54Q9P1Q0 AC007435.1-201ENST00000421086 415 ntBASIC3.46□□□□□ -1.86
VPS54Q9P1Q0 MTCO2P23-201ENST00000425216 680 ntBASIC3.46□□□□□ -1.86
VPS54Q9P1Q0 NANOGP2-201ENST00000435391 727 ntBASIC3.46□□□□□ -1.86
VPS54Q9P1Q0 USP9YP22-201ENST00000438971 294 ntBASIC3.46□□□□□ -1.86
VPS54Q9P1Q0 OR10R1P-201ENST00000441524 1141 ntBASIC3.46□□□□□ -1.86
VPS54Q9P1Q0 RPL37P4-201ENST00000448908 268 ntBASIC3.46□□□□□ -1.86
VPS54Q9P1Q0 UQCRHP3-201ENST00000451503 251 ntBASIC3.46□□□□□ -1.86
VPS54Q9P1Q0 AC010890.1-201ENST00000454699 469 ntTSL 4 BASIC3.46□□□□□ -1.86
VPS54Q9P1Q0 PTGES3P5-201ENST00000455109 434 ntBASIC3.46□□□□□ -1.86
VPS54Q9P1Q0 PNPLA4P1-201ENST00000458328 305 ntBASIC3.46□□□□□ -1.86
VPS54Q9P1Q0 snoU13.24-201ENST00000458998 104 ntBASIC3.46□□□□□ -1.86
VPS54Q9P1Q0 AC146507.2-201ENST00000460608 476 ntBASIC3.46□□□□□ -1.86
VPS54Q9P1Q0 RN7SL75P-201ENST00000461926 281 ntBASIC3.46□□□□□ -1.86
VPS54Q9P1Q0 AP001992.1-205ENST00000462248 379 ntBASIC3.46□□□□□ -1.86
VPS54Q9P1Q0 RPL21P131-201ENST00000497298 483 ntBASIC3.46□□□□□ -1.86
VPS54Q9P1Q0 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC3.46□□□□□ -1.86
VPS54Q9P1Q0 AC026719.1-201ENST00000506059 456 ntTSL 3 BASIC3.46□□□□□ -1.86
VPS54Q9P1Q0 LINC02428-201ENST00000508099 527 ntTSL 5 BASIC3.46□□□□□ -1.86
VPS54Q9P1Q0 AC113347.3-201ENST00000509113 148 ntBASIC3.46□□□□□ -1.86
VPS54Q9P1Q0 RNA5SP341-201ENST00000516261 117 ntBASIC3.46□□□□□ -1.86
VPS54Q9P1Q0 RN7SKP272-201ENST00000516988 232 ntBASIC3.46□□□□□ -1.86
VPS54Q9P1Q0 SNORA31.20-201ENST00000517111 133 ntBASIC3.46□□□□□ -1.86
VPS54Q9P1Q0 OR10V3P-201ENST00000525712 725 ntBASIC3.46□□□□□ -1.86
VPS54Q9P1Q0 PSMA2P1-201ENST00000526365 646 ntBASIC3.46□□□□□ -1.86
VPS54Q9P1Q0 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
VPS54Q9P1Q0 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC3.46□□□□□ -1.86
VPS54Q9P1Q0 AL157402.2-201ENST00000566394 416 ntTSL 3 BASIC3.46□□□□□ -1.86
VPS54Q9P1Q0 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC3.46□□□□□ -1.86
VPS54Q9P1Q0 XIAPP1-201ENST00000603162 600 ntBASIC3.46□□□□□ -1.86
VPS54Q9P1Q0 AL160237.3-201ENST00000604114 1013 ntBASIC3.46□□□□□ -1.86
VPS54Q9P1Q0 AL161756.2-201ENST00000604597 246 ntBASIC3.46□□□□□ -1.86
VPS54Q9P1Q0 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC3.46□□□□□ -1.86
VPS54Q9P1Q0 AL157392.4-201ENST00000609756 345 ntBASIC3.46□□□□□ -1.86
VPS54Q9P1Q0 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC3.46□□□□□ -1.86
VPS54Q9P1Q0 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC3.46□□□□□ -1.86
VPS54Q9P1Q0 AL121895.2-201ENST00000619558 447 ntBASIC3.46□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 78.2 ms