Protein–RNA interactions for Protein: Q9BY12

SCAPER, S phase cyclin A-associated protein in the endoplasmic reticulum, humanhuman

Predictions only

Length 1,400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCAPERQ9BY12 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.9
SCAPERQ9BY12 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.9
SCAPERQ9BY12 RNU6-1320P-201ENST00000390838 107 ntBASIC3.15□□□□□ -1.91
SCAPERQ9BY12 RNU6-1269P-201ENST00000391139 107 ntBASIC3.15□□□□□ -1.91
SCAPERQ9BY12 LUZP4P1-201ENST00000415420 344 ntBASIC3.15□□□□□ -1.91
SCAPERQ9BY12 AC106901.1-201ENST00000425086 698 ntBASIC3.15□□□□□ -1.91
SCAPERQ9BY12 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC3.15□□□□□ -1.91
SCAPERQ9BY12 RNU6-599P-201ENST00000459383 107 ntBASIC3.15□□□□□ -1.91
SCAPERQ9BY12 RNU6-1193P-201ENST00000459461 107 ntBASIC3.15□□□□□ -1.91
SCAPERQ9BY12 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC3.15□□□□□ -1.91
SCAPERQ9BY12 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC3.15□□□□□ -1.91
SCAPERQ9BY12 OR4R2P-201ENST00000530815 597 ntBASIC3.15□□□□□ -1.91
SCAPERQ9BY12 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC3.15□□□□□ -1.91
SCAPERQ9BY12 RPL23AP88-201ENST00000605759 454 ntBASIC3.15□□□□□ -1.91
SCAPERQ9BY12 AL137847.3-201ENST00000611521 109 ntBASIC3.15□□□□□ -1.91
SCAPERQ9BY12 RNU6-368P-201ENST00000620928 107 ntBASIC3.15□□□□□ -1.91
SCAPERQ9BY12 RNU6-538P-201ENST00000622329 107 ntBASIC3.15□□□□□ -1.91
SCAPERQ9BY12 GMFB-210ENST00000628554 639 ntTSL 4 BASIC3.15□□□□□ -1.91
SCAPERQ9BY12 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC3.15□□□□□ -1.91
SCAPERQ9BY12 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
SCAPERQ9BY12 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
SCAPERQ9BY12 AC110774.1-201ENST00000623567 2018 ntBASIC3.14□□□□□ -1.91
SCAPERQ9BY12 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC3.14□□□□□ -1.91
SCAPERQ9BY12 RNU6ATAC38P-201ENST00000408119 126 ntBASIC3.14□□□□□ -1.91
SCAPERQ9BY12 RNU2-37P-201ENST00000410695 177 ntBASIC3.14□□□□□ -1.91
SCAPERQ9BY12 Z82205.1-201ENST00000428456 297 ntBASIC3.14□□□□□ -1.91
SCAPERQ9BY12 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC3.14□□□□□ -1.91
SCAPERQ9BY12 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC3.14□□□□□ -1.91
SCAPERQ9BY12 AC092754.2-201ENST00000463506 460 ntBASIC3.14□□□□□ -1.91
SCAPERQ9BY12 AC017007.3-201ENST00000479865 435 ntBASIC3.14□□□□□ -1.91
SCAPERQ9BY12 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC3.14□□□□□ -1.91
SCAPERQ9BY12 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC3.14□□□□□ -1.91
SCAPERQ9BY12 AC138649.5-201ENST00000637456 137 ntBASIC3.14□□□□□ -1.91
SCAPERQ9BY12 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
SCAPERQ9BY12 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC3.14□□□□□ -1.91
SCAPERQ9BY12 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
SCAPERQ9BY12 DHFRP5-201ENST00000406944 564 ntBASIC3.13□□□□□ -1.91
SCAPERQ9BY12 RNU6-321P-201ENST00000410912 106 ntBASIC3.13□□□□□ -1.91
SCAPERQ9BY12 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC3.13□□□□□ -1.91
SCAPERQ9BY12 OR4K11P-201ENST00000431829 904 ntBASIC3.13□□□□□ -1.91
SCAPERQ9BY12 AC073901.1-201ENST00000462471 408 ntBASIC3.13□□□□□ -1.91
SCAPERQ9BY12 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
SCAPERQ9BY12 SNORA31.15-201ENST00000516771 132 ntBASIC3.13□□□□□ -1.91
SCAPERQ9BY12 GCSAML-207ENST00000527541 1094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.13□□□□□ -1.91
SCAPERQ9BY12 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC3.13□□□□□ -1.91
SCAPERQ9BY12 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC3.13□□□□□ -1.91
SCAPERQ9BY12 AP005901.5-201ENST00000545779 1796 ntBASIC3.13□□□□□ -1.91
SCAPERQ9BY12 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
SCAPERQ9BY12 MTND4P35-201ENST00000604257 1375 ntBASIC3.13□□□□□ -1.91
SCAPERQ9BY12 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC3.13□□□□□ -1.91
SCAPERQ9BY12 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC3.12□□□□□ -1.91
SCAPERQ9BY12 AP000855.1-201ENST00000433210 636 ntTSL 2 BASIC3.12□□□□□ -1.91
SCAPERQ9BY12 NDUFB4P6-201ENST00000436819 366 ntBASIC3.12□□□□□ -1.91
SCAPERQ9BY12 ELOCP13-201ENST00000443934 329 ntBASIC3.12□□□□□ -1.91
SCAPERQ9BY12 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC3.12□□□□□ -1.91
SCAPERQ9BY12 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC3.12□□□□□ -1.91
SCAPERQ9BY12 AL161752.1-201ENST00000557721 263 ntTSL 2 BASIC3.12□□□□□ -1.91
SCAPERQ9BY12 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC3.12□□□□□ -1.91
SCAPERQ9BY12 Y_RNA.783-201ENST00000613546 102 ntBASIC3.12□□□□□ -1.91
SCAPERQ9BY12 AC092638.1-201ENST00000411966 1275 ntBASIC3.11□□□□□ -1.91
SCAPERQ9BY12 AC129850.1-201ENST00000436203 508 ntBASIC3.11□□□□□ -1.91
SCAPERQ9BY12 FABP5P13-201ENST00000452144 328 ntBASIC3.11□□□□□ -1.91
SCAPERQ9BY12 AC138907.2-201ENST00000561479 866 ntTSL 3 BASIC3.11□□□□□ -1.91
SCAPERQ9BY12 AC145350.4-201ENST00000562827 866 ntTSL 3 BASIC3.11□□□□□ -1.91
SCAPERQ9BY12 AC133485.5-201ENST00000563407 866 ntTSL 3 BASIC3.11□□□□□ -1.91
SCAPERQ9BY12 AMZ2P1-203ENST00000565833 850 ntBASIC3.11□□□□□ -1.91
SCAPERQ9BY12 VN1R80P-201ENST00000597126 338 ntBASIC3.11□□□□□ -1.91
SCAPERQ9BY12 AC005156.1-201ENST00000613371 573 ntBASIC3.11□□□□□ -1.91
SCAPERQ9BY12 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC3.11□□□□□ -1.91
SCAPERQ9BY12 AC011978.2-201ENST00000569835 2054 ntBASIC3.11□□□□□ -1.91
SCAPERQ9BY12 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC3.11□□□□□ -1.91
SCAPERQ9BY12 RNU1-138P-201ENST00000384093 164 ntBASIC3.1□□□□□ -1.91
SCAPERQ9BY12 RPL21P75-201ENST00000396599 483 ntBASIC3.1□□□□□ -1.91
SCAPERQ9BY12 RPL21P28-201ENST00000401418 483 ntBASIC3.1□□□□□ -1.91
SCAPERQ9BY12 AL592114.1-201ENST00000403842 483 ntBASIC3.1□□□□□ -1.91
SCAPERQ9BY12 U3.37-201ENST00000408528 213 ntBASIC3.1□□□□□ -1.91
SCAPERQ9BY12 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC3.1□□□□□ -1.91
SCAPERQ9BY12 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC3.1□□□□□ -1.91
SCAPERQ9BY12 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC3.1□□□□□ -1.91
SCAPERQ9BY12 MTND4LP12-201ENST00000448237 295 ntBASIC3.1□□□□□ -1.91
SCAPERQ9BY12 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC3.1□□□□□ -1.91
SCAPERQ9BY12 ARPC3P2-201ENST00000457786 533 ntBASIC3.1□□□□□ -1.91
SCAPERQ9BY12 RPL21P39-201ENST00000463605 483 ntBASIC3.1□□□□□ -1.91
SCAPERQ9BY12 AC011979.1-201ENST00000472300 483 ntBASIC3.1□□□□□ -1.91
SCAPERQ9BY12 RPL21P93-201ENST00000480465 489 ntBASIC3.1□□□□□ -1.91
SCAPERQ9BY12 AC233702.1-201ENST00000482905 502 ntBASIC3.1□□□□□ -1.91
SCAPERQ9BY12 AC093591.1-201ENST00000491435 481 ntBASIC3.1□□□□□ -1.91
SCAPERQ9BY12 RPL21P16-201ENST00000495531 483 ntBASIC3.1□□□□□ -1.91
SCAPERQ9BY12 RNA5SP182-201ENST00000516064 82 ntBASIC3.1□□□□□ -1.91
SCAPERQ9BY12 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.1□□□□□ -1.91
SCAPERQ9BY12 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC3.1□□□□□ -1.91
SCAPERQ9BY12 LRRC37A5P-203ENST00000580181 585 ntBASIC3.1□□□□□ -1.91
SCAPERQ9BY12 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC3.1□□□□□ -1.91
SCAPERQ9BY12 AC011890.2-201ENST00000613393 294 ntBASIC3.1□□□□□ -1.91
SCAPERQ9BY12 ATP8A2P2-201ENST00000437678 1568 ntBASIC3.1□□□□□ -1.91
SCAPERQ9BY12 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC3.1□□□□□ -1.91
SCAPERQ9BY12 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC3.1□□□□□ -1.91
SCAPERQ9BY12 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
SCAPERQ9BY12 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC3.1□□□□□ -1.91
SCAPERQ9BY12 AC023128.2-201ENST00000420880 1223 ntBASIC3.1□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 116 ms