Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC4.7□□□□□ -1.66
NUP88Q99567 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
NUP88Q99567 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
NUP88Q99567 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC4.7□□□□□ -1.66
NUP88Q99567 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC4.7□□□□□ -1.66
NUP88Q99567 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
NUP88Q99567 Y_RNA.46-201ENST00000362695 102 ntBASIC4.7□□□□□ -1.66
NUP88Q99567 CRP-202ENST00000368110 667 ntTSL 3 BASIC4.7□□□□□ -1.66
NUP88Q99567 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
NUP88Q99567 RN7SKP159-201ENST00000410657 292 ntBASIC4.7□□□□□ -1.66
NUP88Q99567 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC4.7□□□□□ -1.66
NUP88Q99567 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC4.7□□□□□ -1.66
NUP88Q99567 USP9YP14-201ENST00000430663 563 ntBASIC4.7□□□□□ -1.66
NUP88Q99567 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC4.7□□□□□ -1.66
NUP88Q99567 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC4.7□□□□□ -1.66
NUP88Q99567 AL353748.1-201ENST00000440753 474 ntBASIC4.7□□□□□ -1.66
NUP88Q99567 AL022238.1-201ENST00000442557 355 ntBASIC4.7□□□□□ -1.66
NUP88Q99567 AC244505.5-201ENST00000443639 207 ntBASIC4.7□□□□□ -1.66
NUP88Q99567 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC4.7□□□□□ -1.66
NUP88Q99567 HCG17-214ENST00000453558 732 ntTSL 5 BASIC4.7□□□□□ -1.66
NUP88Q99567 SNORD108-201ENST00000459332 71 ntBASIC4.7□□□□□ -1.66
NUP88Q99567 RN7SL585P-201ENST00000470538 280 ntBASIC4.7□□□□□ -1.66
NUP88Q99567 LARP1BP2-201ENST00000486594 519 ntBASIC4.7□□□□□ -1.66
NUP88Q99567 RPL21P129-201ENST00000491732 478 ntBASIC4.7□□□□□ -1.66
NUP88Q99567 RPL29P14-201ENST00000495837 428 ntBASIC4.7□□□□□ -1.66
NUP88Q99567 SLC25A15P5-201ENST00000508033 253 ntBASIC4.7□□□□□ -1.66
NUP88Q99567 CDC42P4-201ENST00000510507 563 ntBASIC4.7□□□□□ -1.66
NUP88Q99567 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC4.7□□□□□ -1.66
NUP88Q99567 RNU6-405P-201ENST00000516637 110 ntBASIC4.7□□□□□ -1.66
NUP88Q99567 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC4.7□□□□□ -1.66
NUP88Q99567 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC4.7□□□□□ -1.66
NUP88Q99567 AP000907.2-201ENST00000530827 353 ntBASIC4.7□□□□□ -1.66
NUP88Q99567 AC022880.1-201ENST00000534017 973 ntBASIC4.7□□□□□ -1.66
NUP88Q99567 SETP2-201ENST00000553886 926 ntBASIC4.7□□□□□ -1.66
NUP88Q99567 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC4.7□□□□□ -1.66
NUP88Q99567 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC4.7□□□□□ -1.66
NUP88Q99567 AL157394.1-201ENST00000562983 1224 ntBASIC4.7□□□□□ -1.66
NUP88Q99567 AC009977.1-201ENST00000586015 570 ntBASIC4.7□□□□□ -1.66
NUP88Q99567 AC091805.2-201ENST00000603848 235 ntBASIC4.7□□□□□ -1.66
NUP88Q99567 AL592436.1-201ENST00000605135 558 ntBASIC4.7□□□□□ -1.66
NUP88Q99567 AC008121.2-201ENST00000614647 523 ntBASIC4.7□□□□□ -1.66
NUP88Q99567 AC015540.1-201ENST00000615828 501 ntBASIC4.7□□□□□ -1.66
NUP88Q99567 AC006133.1-201ENST00000617106 264 ntBASIC4.7□□□□□ -1.66
NUP88Q99567 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
NUP88Q99567 AC110994.2-201ENST00000635481 492 ntBASIC4.7□□□□□ -1.66
NUP88Q99567 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC4.7□□□□□ -1.66
NUP88Q99567 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
NUP88Q99567 STK31-205ENST00000433467 3085 ntTSL 2 BASIC4.7□□□□□ -1.66
NUP88Q99567 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC4.7□□□□□ -1.66
NUP88Q99567 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
NUP88Q99567 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
NUP88Q99567 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC4.69□□□□□ -1.66
NUP88Q99567 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC4.69□□□□□ -1.66
NUP88Q99567 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
NUP88Q99567 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC4.69□□□□□ -1.66
NUP88Q99567 FRG1BP-201ENST00000278882 761 ntBASIC4.69□□□□□ -1.66
NUP88Q99567 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
NUP88Q99567 RNY4P34-201ENST00000364779 95 ntBASIC4.69□□□□□ -1.66
NUP88Q99567 RNU6-359P-201ENST00000365466 108 ntBASIC4.69□□□□□ -1.66
NUP88Q99567 RNU6-1279P-201ENST00000383917 103 ntBASIC4.69□□□□□ -1.66
NUP88Q99567 RNU6-348P-201ENST00000384386 107 ntBASIC4.69□□□□□ -1.66
NUP88Q99567 RPS3AP3-201ENST00000411933 242 ntBASIC4.69□□□□□ -1.66
NUP88Q99567 HMGB3P23-201ENST00000414981 585 ntBASIC4.69□□□□□ -1.66
NUP88Q99567 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC4.69□□□□□ -1.66
NUP88Q99567 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC4.69□□□□□ -1.66
NUP88Q99567 MTND4LP10-201ENST00000435146 291 ntBASIC4.69□□□□□ -1.66
NUP88Q99567 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC4.69□□□□□ -1.66
NUP88Q99567 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC4.69□□□□□ -1.66
NUP88Q99567 RPL36AP13-201ENST00000457490 317 ntBASIC4.69□□□□□ -1.66
NUP88Q99567 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC4.69□□□□□ -1.66
NUP88Q99567 snoU13.3-201ENST00000459441 104 ntBASIC4.69□□□□□ -1.66
NUP88Q99567 AC091153.1-201ENST00000466297 402 ntBASIC4.69□□□□□ -1.66
NUP88Q99567 RPL7P24-201ENST00000493052 752 ntBASIC4.69□□□□□ -1.66
NUP88Q99567 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC4.69□□□□□ -1.66
NUP88Q99567 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC4.69□□□□□ -1.66
NUP88Q99567 CR383656.7-201ENST00000548164 174 ntBASIC4.69□□□□□ -1.66
NUP88Q99567 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC4.69□□□□□ -1.66
NUP88Q99567 SETP7-201ENST00000552169 453 ntBASIC4.69□□□□□ -1.66
NUP88Q99567 RPL21P5-201ENST00000554662 472 ntBASIC4.69□□□□□ -1.66
NUP88Q99567 AC245505.1-201ENST00000556398 224 ntBASIC4.69□□□□□ -1.66
NUP88Q99567 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC4.69□□□□□ -1.66
NUP88Q99567 MIR5685-201ENST00000579080 79 ntBASIC4.69□□□□□ -1.66
NUP88Q99567 AC012417.1-201ENST00000582307 1039 ntBASIC4.69□□□□□ -1.66
NUP88Q99567 MIR3158-1-201ENST00000583596 81 ntBASIC4.69□□□□□ -1.66
NUP88Q99567 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
NUP88Q99567 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC4.69□□□□□ -1.66
NUP88Q99567 MIR92B-201ENST00000607575 96 ntBASIC4.69□□□□□ -1.66
NUP88Q99567 AC013562.2-201ENST00000611632 603 ntBASIC4.69□□□□□ -1.66
NUP88Q99567 AL589743.7-201ENST00000612637 233 ntBASIC4.69□□□□□ -1.66
NUP88Q99567 AC005332.10-201ENST00000612725 619 ntBASIC4.69□□□□□ -1.66
NUP88Q99567 AP001506.1-201ENST00000615444 211 ntBASIC4.69□□□□□ -1.66
NUP88Q99567 AC112200.1-201ENST00000625015 234 ntBASIC4.69□□□□□ -1.66
NUP88Q99567 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
NUP88Q99567 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
NUP88Q99567 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.69□□□□□ -1.66
NUP88Q99567 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC4.69□□□□□ -1.66
NUP88Q99567 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC4.69□□□□□ -1.66
NUP88Q99567 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC4.69□□□□□ -1.66
NUP88Q99567 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC4.69□□□□□ -1.66
NUP88Q99567 AC095050.2-201ENST00000510748 1458 ntBASIC4.69□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 125.2 ms