| ARAP1 | Q96P48 | MTND2P2-201 | ENST00000434633 | 945 nt | BASIC | 3.54 | □□□□□ -1.84 | | |
| ARAP1 | Q96P48 | RPL23AP76-201 | ENST00000441860 | 458 nt | BASIC | 3.54 | □□□□□ -1.84 | | |
| ARAP1 | Q96P48 | AC004160.1-211 | ENST00000445839 | 565 nt | TSL 4 BASIC | 3.54 | □□□□□ -1.84 | | |
| ARAP1 | Q96P48 | AC140059.1-201 | ENST00000489238 | 361 nt | BASIC | 3.54 | □□□□□ -1.84 | | |
| ARAP1 | Q96P48 | AC025881.1-201 | ENST00000518851 | 512 nt | BASIC | 3.54 | □□□□□ -1.84 | | |
| ARAP1 | Q96P48 | TRIQK-207 | ENST00000519069 | 598 nt | TSL 4 BASIC | 3.54 | □□□□□ -1.84 | | |
| ARAP1 | Q96P48 | AC006254.3-201 | ENST00000603353 | 884 nt | BASIC | 3.54 | □□□□□ -1.84 | | |
| ARAP1 | Q96P48 | AC009831.4-201 | ENST00000620744 | 325 nt | BASIC | 3.54 | □□□□□ -1.84 | | |
| ARAP1 | Q96P48 | AL356266.1-201 | ENST00000623311 | 483 nt | BASIC | 3.54 | □□□□□ -1.84 | | |
| ARAP1 | Q96P48 | AC107398.4-201 | ENST00000635489 | 765 nt | TSL 2 BASIC | 3.54 | □□□□□ -1.84 | | |
| ARAP1 | Q96P48 | ATXN3-248 | ENST00000558190 | 26812 nt | APPRIS P1 TSL 1 (best) BASIC | 3.53 | □□□□□ -1.84 | | |
| ARAP1 | Q96P48 | KCNT2-202 | ENST00000367433 | 5883 nt | TSL 1 (best) BASIC | 3.53 | □□□□□ -1.84 | | |
| ARAP1 | Q96P48 | CFHR4-201 | ENST00000251424 | 1292 nt | TSL 1 (best) BASIC | 3.53 | □□□□□ -1.84 | | |
| ARAP1 | Q96P48 | HAS2-201 | ENST00000303924 | 4190 nt | APPRIS P1 TSL 1 (best) BASIC | 3.53 | □□□□□ -1.84 | | |
| ARAP1 | Q96P48 | CFHR1-201 | ENST00000320493 | 1271 nt | APPRIS P1 TSL 1 (best) BASIC | 3.53 | □□□□□ -1.84 | | |
| ARAP1 | Q96P48 | LRRC69-201 | ENST00000343709 | 720 nt | TSL 2 BASIC | 3.53 | □□□□□ -1.84 | | |
| ARAP1 | Q96P48 | MT-ND2-201 | ENST00000361453 | 1042 nt | APPRIS P1 BASIC | 3.53 | □□□□□ -1.84 | | |
| ARAP1 | Q96P48 | RNU1-51P-201 | ENST00000365345 | 176 nt | BASIC | 3.53 | □□□□□ -1.84 | | |
| ARAP1 | Q96P48 | RNU1-138P-201 | ENST00000384093 | 164 nt | BASIC | 3.53 | □□□□□ -1.84 | | |
| ARAP1 | Q96P48 | AL589994.1-201 | ENST00000404962 | 340 nt | BASIC | 3.53 | □□□□□ -1.84 | | |
| ARAP1 | Q96P48 | AL139156.1-201 | ENST00000412785 | 841 nt | BASIC | 3.53 | □□□□□ -1.84 | | |
| ARAP1 | Q96P48 | TRAPPC2P5-201 | ENST00000426293 | 308 nt | BASIC | 3.53 | □□□□□ -1.84 | | |
| ARAP1 | Q96P48 | AL445646.1-201 | ENST00000431784 | 216 nt | BASIC | 3.53 | □□□□□ -1.84 | | |
| ARAP1 | Q96P48 | SCARNA16.3-201 | ENST00000516595 | 184 nt | BASIC | 3.53 | □□□□□ -1.84 | | |
| ARAP1 | Q96P48 | ZNF84-205 | ENST00000535439 | 647 nt | TSL 5 BASIC | 3.53 | □□□□□ -1.84 | | |
| ARAP1 | Q96P48 | NR2F2-AS1-211 | ENST00000561402 | 589 nt | TSL 3 BASIC | 3.53 | □□□□□ -1.84 | | |
| ARAP1 | Q96P48 | NF1P5-201 | ENST00000588287 | 448 nt | BASIC | 3.53 | □□□□□ -1.84 | | |
| ARAP1 | Q96P48 | AL157938.2-203 | ENST00000589540 | 931 nt | TSL 5 BASIC | 3.53 | □□□□□ -1.84 | | |
| ARAP1 | Q96P48 | HIKESHI-208 | ENST00000618164 | 499 nt | TSL 5 BASIC | 3.53 | □□□□□ -1.84 | | |
| ARAP1 | Q96P48 | AC093591.3-201 | ENST00000634516 | 308 nt | BASIC | 3.53 | □□□□□ -1.84 | | |
| ARAP1 | Q96P48 | KLRC1-202 | ENST00000359151 | 1407 nt | APPRIS P4 TSL 1 (best) BASIC | 3.52 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | MIR6073-201 | ENST00000352083 | 89 nt | BASIC | 3.52 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | C11orf65-206 | ENST00000529391 | 973 nt | APPRIS P1 TSL 2 BASIC | 3.52 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | AC105137.2-201 | ENST00000569073 | 466 nt | BASIC | 3.52 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | AC010546.1-201 | ENST00000569391 | 485 nt | BASIC | 3.52 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | LCORL-202 | ENST00000382224 | 4984 nt | APPRIS ALT2 TSL 5 BASIC | 3.52 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | AL136964.1-201 | ENST00000622038 | 2990 nt | BASIC | 3.52 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | COMMD6-201 | ENST00000355801 | 486 nt | TSL 2 BASIC | 3.51 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | AC093157.1-203 | ENST00000416329 | 713 nt | TSL 5 BASIC | 3.51 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | CFTRP1-201 | ENST00000456646 | 183 nt | BASIC | 3.51 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | HAUS1P1-201 | ENST00000505275 | 832 nt | BASIC | 3.51 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | RN7SKP234-201 | ENST00000517173 | 224 nt | BASIC | 3.51 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | IGHVIII-38-1-201 | ENST00000521454 | 282 nt | BASIC | 3.51 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | AC107958.2-201 | ENST00000555396 | 592 nt | TSL 3 BASIC | 3.51 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | AC073348.1-201 | ENST00000623002 | 331 nt | BASIC | 3.51 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | C9orf153-204 | ENST00000613665 | 1738 nt | APPRIS P2 TSL 2 BASIC | 3.51 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | OXR1-207 | ENST00000497705 | 2007 nt | TSL 2 BASIC | 3.51 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | RRAS2-202 | ENST00000414023 | 1884 nt | TSL 2 BASIC | 3.5 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | NT5C3A-205 | ENST00000409467 | 1032 nt | APPRIS ALT1 TSL 5 BASIC | 3.5 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | EI24P1-201 | ENST00000416584 | 867 nt | BASIC | 3.5 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | MAGI2-AS1-201 | ENST00000428298 | 472 nt | TSL 3 BASIC | 3.5 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | ARF4P2-201 | ENST00000430209 | 526 nt | BASIC | 3.5 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | ELOCP10-201 | ENST00000440624 | 327 nt | BASIC | 3.5 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | AC092473.1-201 | ENST00000441098 | 221 nt | BASIC | 3.5 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | VN1R96P-201 | ENST00000446052 | 858 nt | BASIC | 3.5 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | NUCB2-202 | ENST00000458064 | 1279 nt | TSL 1 (best) BASIC | 3.5 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | AC004263.1-201 | ENST00000479327 | 332 nt | BASIC | 3.5 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | AL049830.2-201 | ENST00000480072 | 201 nt | BASIC | 3.5 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | LINC02430-201 | ENST00000504755 | 476 nt | TSL 3 BASIC | 3.5 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | AC025244.2-201 | ENST00000509215 | 422 nt | TSL 3 BASIC | 3.5 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | SMARCE1P4-201 | ENST00000523647 | 241 nt | BASIC | 3.5 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | OR4H12P-201 | ENST00000556269 | 907 nt | BASIC | 3.5 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | ELOCP34-201 | ENST00000604436 | 327 nt | BASIC | 3.5 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | AC103858.1-201 | ENST00000607019 | 476 nt | TSL 3 BASIC | 3.5 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | AL451074.6-201 | ENST00000608512 | 729 nt | BASIC | 3.5 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | AL137847.3-201 | ENST00000611521 | 109 nt | BASIC | 3.5 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | VN1R7P-201 | ENST00000619242 | 903 nt | BASIC | 3.5 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | NEB-201 | ENST00000172853 | 20634 nt | APPRIS ALT2 TSL 1 (best) BASIC | 3.5 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | CNOT2-231 | ENST00000551483 | 4753 nt | TSL 2 BASIC | 3.5 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | SEL1L2-202 | ENST00000378072 | 1892 nt | TSL 2 BASIC | 3.5 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | TDRD15-202 | ENST00000622654 | 5805 nt | APPRIS P1 BASIC | 3.5 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | DYNLT3P1-201 | ENST00000378574 | 347 nt | BASIC | 3.49 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | AL138785.1-201 | ENST00000425821 | 331 nt | BASIC | 3.49 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | AC099566.1-212 | ENST00000451675 | 799 nt | TSL 3 BASIC | 3.49 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | AP000705.1-201 | ENST00000454567 | 350 nt | BASIC | 3.49 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | SLC7A11-AS1-201 | ENST00000510066 | 817 nt | TSL 2 BASIC | 3.49 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | VTRNA2-2P-201 | ENST00000516091 | 103 nt | BASIC | 3.49 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | RNA5SP309-201 | ENST00000516670 | 106 nt | BASIC | 3.49 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | SUB1P3-201 | ENST00000564581 | 315 nt | BASIC | 3.49 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | AC007014.1-201 | ENST00000572828 | 610 nt | TSL 3 BASIC | 3.49 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | AC090953.1-201 | ENST00000604305 | 1092 nt | BASIC | 3.49 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | AC091953.2-201 | ENST00000623979 | 160 nt | BASIC | 3.49 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | RGPD1-202 | ENST00000409776 | 6692 nt | APPRIS ALT2 TSL 1 (best) BASIC | 3.49 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | DPY19L2P1-203 | ENST00000458672 | 3347 nt | TSL 1 (best) BASIC | 3.49 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | PRKG1-205 | ENST00000401604 | 5922 nt | TSL 5 BASIC | 3.49 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | MTCO1P14-201 | ENST00000441695 | 1559 nt | BASIC | 3.48 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | RN7SKP226-201 | ENST00000364912 | 300 nt | BASIC | 3.48 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | AC006333.1-201 | ENST00000422401 | 410 nt | TSL 3 BASIC | 3.48 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | AL590867.3-201 | ENST00000436953 | 438 nt | TSL 3 BASIC | 3.48 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | AC092798.1-201 | ENST00000458542 | 409 nt | BASIC | 3.48 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | OR4R2P-201 | ENST00000530815 | 597 nt | BASIC | 3.48 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | AC110588.1-201 | ENST00000559699 | 137 nt | BASIC | 3.48 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | AP001542.2-201 | ENST00000593141 | 364 nt | BASIC | 3.48 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | AL589994.2-201 | ENST00000621124 | 579 nt | BASIC | 3.48 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | OXR1-215 | ENST00000531443 | 3599 nt | TSL 5 BASIC | 3.48 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | AGL-204 | ENST00000370161 | 6923 nt | TSL 5 BASIC | 3.48 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | MACC1-202 | ENST00000400331 | 9159 nt | APPRIS P1 TSL 2 BASIC | 3.48 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | SNORD114-26-201 | ENST00000363543 | 72 nt | BASIC | 3.47 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | RNA5SP190-201 | ENST00000365222 | 118 nt | BASIC | 3.47 | □□□□□ -1.85 | | |
| ARAP1 | Q96P48 | SAR1AP2-201 | ENST00000392696 | 594 nt | BASIC | 3.47 | □□□□□ -1.85 | | |