Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 ZNF29P-201ENST00000225587 168 ntBASIC3.93□□□□□ -1.78
NPHP3Q7Z494 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC3.93□□□□□ -1.78
NPHP3Q7Z494 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC3.93□□□□□ -1.78
NPHP3Q7Z494 Y_RNA.578-201ENST00000390903 88 ntBASIC3.93□□□□□ -1.78
NPHP3Q7Z494 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.93□□□□□ -1.78
NPHP3Q7Z494 RNU6-575P-201ENST00000411326 105 ntBASIC3.93□□□□□ -1.78
NPHP3Q7Z494 MTND4P3-201ENST00000417829 541 ntBASIC3.93□□□□□ -1.78
NPHP3Q7Z494 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC3.93□□□□□ -1.78
NPHP3Q7Z494 RPS15AP6-201ENST00000420703 385 ntBASIC3.93□□□□□ -1.78
NPHP3Q7Z494 TEX41-204ENST00000423031 491 ntTSL 4 BASIC3.93□□□□□ -1.78
NPHP3Q7Z494 AC114973.1-201ENST00000429057 632 ntBASIC3.93□□□□□ -1.78
NPHP3Q7Z494 LINC01598-201ENST00000432067 460 ntTSL 3 BASIC3.93□□□□□ -1.78
NPHP3Q7Z494 GTF2IP3-201ENST00000433887 494 ntBASIC3.93□□□□□ -1.78
NPHP3Q7Z494 RPL23AP22-201ENST00000437556 453 ntBASIC3.93□□□□□ -1.78
NPHP3Q7Z494 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC3.93□□□□□ -1.78
NPHP3Q7Z494 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC3.93□□□□□ -1.78
NPHP3Q7Z494 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC3.93□□□□□ -1.78
NPHP3Q7Z494 ASNSP3-201ENST00000451989 1306 ntBASIC3.93□□□□□ -1.78
NPHP3Q7Z494 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC3.93□□□□□ -1.78
NPHP3Q7Z494 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC3.93□□□□□ -1.78
NPHP3Q7Z494 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC3.93□□□□□ -1.78
NPHP3Q7Z494 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC3.93□□□□□ -1.78
NPHP3Q7Z494 TRAV31-201ENST00000502780 342 ntBASIC3.93□□□□□ -1.78
NPHP3Q7Z494 AC008413.1-201ENST00000511864 177 ntBASIC3.93□□□□□ -1.78
NPHP3Q7Z494 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC3.93□□□□□ -1.78
NPHP3Q7Z494 AC110760.3-202ENST00000515177 371 ntBASIC3.93□□□□□ -1.78
NPHP3Q7Z494 RNA5SP24-201ENST00000516478 95 ntBASIC3.93□□□□□ -1.78
NPHP3Q7Z494 AC104027.1-201ENST00000521887 300 ntBASIC3.93□□□□□ -1.78
NPHP3Q7Z494 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC3.93□□□□□ -1.78
NPHP3Q7Z494 MTCYBP23-201ENST00000558717 1102 ntBASIC3.93□□□□□ -1.78
NPHP3Q7Z494 AC087286.1-201ENST00000560712 568 ntTSL 3 BASIC3.93□□□□□ -1.78
NPHP3Q7Z494 AC091588.1-201ENST00000578504 359 ntTSL 3 BASIC3.93□□□□□ -1.78
NPHP3Q7Z494 BPTFP1-201ENST00000579209 492 ntBASIC3.93□□□□□ -1.78
NPHP3Q7Z494 AC105094.2-203ENST00000590357 555 ntTSL 4 BASIC3.93□□□□□ -1.78
NPHP3Q7Z494 AL160237.3-201ENST00000604114 1013 ntBASIC3.93□□□□□ -1.78
NPHP3Q7Z494 AC002487.1-201ENST00000604565 994 ntBASIC3.93□□□□□ -1.78
NPHP3Q7Z494 AL583856.2-201ENST00000606298 543 ntBASIC3.93□□□□□ -1.78
NPHP3Q7Z494 AC024060.1-201ENST00000607052 494 ntBASIC3.93□□□□□ -1.78
NPHP3Q7Z494 AP004247.3-201ENST00000608682 624 ntBASIC3.93□□□□□ -1.78
NPHP3Q7Z494 AL591516.1-201ENST00000611326 274 ntBASIC3.93□□□□□ -1.78
NPHP3Q7Z494 Xist_exon1.1-201ENST00000618930 85 ntBASIC3.93□□□□□ -1.78
NPHP3Q7Z494 AC064859.1-201ENST00000624741 174 ntBASIC3.93□□□□□ -1.78
NPHP3Q7Z494 AC074099.1-201ENST00000634100 679 ntTSL 5 BASIC3.93□□□□□ -1.78
NPHP3Q7Z494 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.92□□□□□ -1.78
NPHP3Q7Z494 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
NPHP3Q7Z494 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
NPHP3Q7Z494 AC009487.2-201ENST00000420969 6821 ntBASIC3.92□□□□□ -1.78
NPHP3Q7Z494 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
NPHP3Q7Z494 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
NPHP3Q7Z494 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC3.92□□□□□ -1.78
NPHP3Q7Z494 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
NPHP3Q7Z494 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.92□□□□□ -1.78
NPHP3Q7Z494 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC3.92□□□□□ -1.78
NPHP3Q7Z494 RNA5SP293-201ENST00000410527 113 ntBASIC3.92□□□□□ -1.78
NPHP3Q7Z494 RPL7P53-201ENST00000421245 739 ntBASIC3.92□□□□□ -1.78
NPHP3Q7Z494 SFR1P2-201ENST00000421841 730 ntBASIC3.92□□□□□ -1.78
NPHP3Q7Z494 GRM7-AS3-203ENST00000424366 486 ntTSL 3 BASIC3.92□□□□□ -1.78
NPHP3Q7Z494 AC005517.2-201ENST00000424673 553 ntBASIC3.92□□□□□ -1.78
NPHP3Q7Z494 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
NPHP3Q7Z494 ISCA1P2-201ENST00000438679 421 ntBASIC3.92□□□□□ -1.78
NPHP3Q7Z494 AC073174.1-201ENST00000444155 415 ntTSL 5 BASIC3.92□□□□□ -1.78
NPHP3Q7Z494 DUXAP8-207ENST00000456786 622 ntBASIC3.92□□□□□ -1.78
NPHP3Q7Z494 AC069444.1-201ENST00000489428 266 ntTSL 3 BASIC3.92□□□□□ -1.78
NPHP3Q7Z494 AC078817.1-201ENST00000492623 435 ntBASIC3.92□□□□□ -1.78
NPHP3Q7Z494 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC3.92□□□□□ -1.78
NPHP3Q7Z494 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC3.92□□□□□ -1.78
NPHP3Q7Z494 RNU1-143P-201ENST00000516296 146 ntBASIC3.92□□□□□ -1.78
NPHP3Q7Z494 AC023632.5-201ENST00000521010 491 ntTSL 3 BASIC3.92□□□□□ -1.78
NPHP3Q7Z494 PDCL2P2-201ENST00000533651 189 ntBASIC3.92□□□□□ -1.78
NPHP3Q7Z494 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC3.92□□□□□ -1.78
NPHP3Q7Z494 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
NPHP3Q7Z494 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC3.92□□□□□ -1.78
NPHP3Q7Z494 AL356804.1-201ENST00000553791 448 ntTSL 5 BASIC3.92□□□□□ -1.78
NPHP3Q7Z494 MIR4760-201ENST00000585040 80 ntBASIC3.92□□□□□ -1.78
NPHP3Q7Z494 MTCO2P2-201ENST00000591258 225 ntBASIC3.92□□□□□ -1.78
NPHP3Q7Z494 AP000238.1-201ENST00000608759 426 ntBASIC3.92□□□□□ -1.78
NPHP3Q7Z494 U1.23-201ENST00000610293 146 ntBASIC3.92□□□□□ -1.78
NPHP3Q7Z494 DUXAP10-204ENST00000612052 616 ntBASIC3.92□□□□□ -1.78
NPHP3Q7Z494 PART1_2.1-201ENST00000612397 250 ntBASIC3.92□□□□□ -1.78
NPHP3Q7Z494 RNU1-68P-201ENST00000615382 146 ntBASIC3.92□□□□□ -1.78
NPHP3Q7Z494 U1.39-201ENST00000621562 146 ntBASIC3.92□□□□□ -1.78
NPHP3Q7Z494 FER-202ENST00000438717 1531 ntTSL 2 BASIC3.91□□□□□ -1.78
NPHP3Q7Z494 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.91□□□□□ -1.78
NPHP3Q7Z494 CAPZA3-201ENST00000317658 1087 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
NPHP3Q7Z494 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC3.91□□□□□ -1.78
NPHP3Q7Z494 MIR504-201ENST00000385065 83 ntBASIC3.91□□□□□ -1.78
NPHP3Q7Z494 SSXP10-201ENST00000402595 565 ntBASIC3.91□□□□□ -1.78
NPHP3Q7Z494 SFR1P1-201ENST00000403720 688 ntBASIC3.91□□□□□ -1.78
NPHP3Q7Z494 MIR1250-201ENST00000408098 113 ntBASIC3.91□□□□□ -1.78
NPHP3Q7Z494 OR51A3P-201ENST00000413596 924 ntBASIC3.91□□□□□ -1.78
NPHP3Q7Z494 MTCYBP42-201ENST00000444653 1130 ntBASIC3.91□□□□□ -1.78
NPHP3Q7Z494 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC3.91□□□□□ -1.78
NPHP3Q7Z494 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC3.91□□□□□ -1.78
NPHP3Q7Z494 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC3.91□□□□□ -1.78
NPHP3Q7Z494 AL136097.1-201ENST00000456945 913 ntBASIC3.91□□□□□ -1.78
NPHP3Q7Z494 RPL21P71-201ENST00000465598 459 ntBASIC3.91□□□□□ -1.78
NPHP3Q7Z494 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC3.91□□□□□ -1.78
NPHP3Q7Z494 AC117522.3-201ENST00000507974 584 ntBASIC3.91□□□□□ -1.78
NPHP3Q7Z494 TXNP6-201ENST00000510190 310 ntBASIC3.91□□□□□ -1.78
NPHP3Q7Z494 AC008549.1-201ENST00000512900 643 ntBASIC3.91□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 99.9 ms