Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 LINC01878-201ENST00000434559 769 ntTSL 3 BASIC1.94□□□□□ -2.1
CHD9Q3L8U1 AC067805.1-201ENST00000559344 470 ntBASIC1.94□□□□□ -2.1
CHD9Q3L8U1 NF1P5-201ENST00000588287 448 ntBASIC1.94□□□□□ -2.1
CHD9Q3L8U1 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC1.94□□□□□ -2.1
CHD9Q3L8U1 AC007193.1-201ENST00000599645 448 ntTSL 5 BASIC1.94□□□□□ -2.1
CHD9Q3L8U1 AC024560.3-201ENST00000608482 349 ntBASIC1.94□□□□□ -2.1
CHD9Q3L8U1 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
CHD9Q3L8U1 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC1.93□□□□□ -2.1
CHD9Q3L8U1 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
CHD9Q3L8U1 RPL23AP48-201ENST00000406913 488 ntBASIC1.93□□□□□ -2.1
CHD9Q3L8U1 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC1.93□□□□□ -2.1
CHD9Q3L8U1 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC1.93□□□□□ -2.1
CHD9Q3L8U1 LAMTOR5P1-201ENST00000444290 270 ntBASIC1.93□□□□□ -2.1
CHD9Q3L8U1 AC007395.1-201ENST00000451333 677 ntBASIC1.93□□□□□ -2.1
CHD9Q3L8U1 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC1.93□□□□□ -2.1
CHD9Q3L8U1 PTP4A1P6-201ENST00000531034 478 ntBASIC1.93□□□□□ -2.1
CHD9Q3L8U1 TPMTP1-201ENST00000592307 737 ntBASIC1.93□□□□□ -2.1
CHD9Q3L8U1 AC131902.3-201ENST00000611767 581 ntBASIC1.93□□□□□ -2.1
CHD9Q3L8U1 AC244517.1-201ENST00000606030 2086 ntBASIC1.93□□□□□ -2.1
CHD9Q3L8U1 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
CHD9Q3L8U1 ATP5F1P1-201ENST00000433775 569 ntBASIC1.93□□□□□ -2.1
CHD9Q3L8U1 BX322784.1-201ENST00000455793 1077 ntBASIC1.93□□□□□ -2.1
CHD9Q3L8U1 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC1.93□□□□□ -2.1
CHD9Q3L8U1 LINC02463-201ENST00000546414 497 ntTSL 3 BASIC1.93□□□□□ -2.1
CHD9Q3L8U1 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC1.93□□□□□ -2.1
CHD9Q3L8U1 LINC00216-201ENST00000623548 1126 ntBASIC1.93□□□□□ -2.1
CHD9Q3L8U1 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC1.93□□□□□ -2.1
CHD9Q3L8U1 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.93□□□□□ -2.1
CHD9Q3L8U1 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.93□□□□□ -2.1
CHD9Q3L8U1 PNPT1P2-201ENST00000456768 2050 ntBASIC1.93□□□□□ -2.1
CHD9Q3L8U1 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
CHD9Q3L8U1 MIR6073-201ENST00000352083 89 ntBASIC1.92□□□□□ -2.1
CHD9Q3L8U1 RNA5SP296-201ENST00000410523 111 ntBASIC1.92□□□□□ -2.1
CHD9Q3L8U1 FO393414.1-201ENST00000428697 1184 ntBASIC1.92□□□□□ -2.1
CHD9Q3L8U1 ARPC3P1-201ENST00000437218 533 ntBASIC1.92□□□□□ -2.1
CHD9Q3L8U1 PPP1R2P5-201ENST00000457256 603 ntBASIC1.92□□□□□ -2.1
CHD9Q3L8U1 CEACAMP4-201ENST00000457676 421 ntBASIC1.92□□□□□ -2.1
CHD9Q3L8U1 AC107398.1-201ENST00000486904 505 ntBASIC1.92□□□□□ -2.1
CHD9Q3L8U1 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
CHD9Q3L8U1 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC1.92□□□□□ -2.1
CHD9Q3L8U1 GOLGA5P1-201ENST00000507317 980 ntBASIC1.92□□□□□ -2.1
CHD9Q3L8U1 RNA5SP102-201ENST00000516865 106 ntBASIC1.92□□□□□ -2.1
CHD9Q3L8U1 AC116535.2-201ENST00000532365 441 ntTSL 5 BASIC1.92□□□□□ -2.1
CHD9Q3L8U1 RMST_2.1-201ENST00000617263 136 ntBASIC1.92□□□□□ -2.1
CHD9Q3L8U1 TMEM161BP1-201ENST00000457388 1457 ntBASIC1.92□□□□□ -2.1
CHD9Q3L8U1 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC1.92□□□□□ -2.1
CHD9Q3L8U1 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC1.92□□□□□ -2.1
CHD9Q3L8U1 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC1.92□□□□□ -2.1
CHD9Q3L8U1 AC013404.1-201ENST00000413068 249 ntBASIC1.92□□□□□ -2.1
CHD9Q3L8U1 AC093151.1-201ENST00000427711 313 ntBASIC1.92□□□□□ -2.1
CHD9Q3L8U1 AL138799.3-201ENST00000438968 350 ntBASIC1.92□□□□□ -2.1
CHD9Q3L8U1 AL137159.1-201ENST00000452808 512 ntBASIC1.92□□□□□ -2.1
CHD9Q3L8U1 AL353748.2-201ENST00000622148 471 ntBASIC1.92□□□□□ -2.1
CHD9Q3L8U1 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC1.92□□□□□ -2.1
CHD9Q3L8U1 AL021368.2-201ENST00000606125 5352 ntBASIC1.92□□□□□ -2.1
CHD9Q3L8U1 AL592437.2-201ENST00000421655 2434 ntBASIC1.92□□□□□ -2.1
CHD9Q3L8U1 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
CHD9Q3L8U1 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.92□□□□□ -2.1
CHD9Q3L8U1 MTND5P27-201ENST00000428871 1720 ntBASIC1.92□□□□□ -2.1
CHD9Q3L8U1 SNORD114-26-201ENST00000363543 72 ntBASIC1.92□□□□□ -2.1
CHD9Q3L8U1 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC1.92□□□□□ -2.1
CHD9Q3L8U1 SNORA25.15-201ENST00000516487 89 ntBASIC1.92□□□□□ -2.1
CHD9Q3L8U1 AC098617.1-216ENST00000602099 708 ntTSL 5 BASIC1.92□□□□□ -2.1
CHD9Q3L8U1 AC099654.11-201ENST00000638857 294 ntBASIC1.92□□□□□ -2.1
CHD9Q3L8U1 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC1.92□□□□□ -2.1
CHD9Q3L8U1 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC1.91□□□□□ -2.1
CHD9Q3L8U1 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
CHD9Q3L8U1 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC1.91□□□□□ -2.1
CHD9Q3L8U1 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC1.91□□□□□ -2.1
CHD9Q3L8U1 MTCO1P22-201ENST00000604619 1360 ntBASIC1.91□□□□□ -2.1
CHD9Q3L8U1 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
CHD9Q3L8U1 RNU6-582P-201ENST00000362989 107 ntBASIC1.91□□□□□ -2.1
CHD9Q3L8U1 SNRPFP4-201ENST00000456366 242 ntBASIC1.91□□□□□ -2.1
CHD9Q3L8U1 SUMO2P4-201ENST00000504193 276 ntBASIC1.91□□□□□ -2.1
CHD9Q3L8U1 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC1.91□□□□□ -2.1
CHD9Q3L8U1 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC1.91□□□□□ -2.1
CHD9Q3L8U1 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
CHD9Q3L8U1 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC1.91□□□□□ -2.1
CHD9Q3L8U1 RNA5SP502-201ENST00000362694 119 ntBASIC1.91□□□□□ -2.1
CHD9Q3L8U1 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC1.91□□□□□ -2.1
CHD9Q3L8U1 RNU1-123P-201ENST00000458950 160 ntBASIC1.91□□□□□ -2.1
CHD9Q3L8U1 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC1.91□□□□□ -2.1
CHD9Q3L8U1 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC1.91□□□□□ -2.1
CHD9Q3L8U1 SEPT7P7-201ENST00000420492 1301 ntBASIC1.9□□□□□ -2.1
CHD9Q3L8U1 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC1.9□□□□□ -2.1
CHD9Q3L8U1 MIR708-201ENST00000390708 88 ntBASIC1.9□□□□□ -2.1
CHD9Q3L8U1 U3.37-201ENST00000408528 213 ntBASIC1.9□□□□□ -2.1
CHD9Q3L8U1 RPL7P37-201ENST00000425095 738 ntBASIC1.9□□□□□ -2.1
CHD9Q3L8U1 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC1.9□□□□□ -2.1
CHD9Q3L8U1 AC133473.1-201ENST00000455173 299 ntBASIC1.9□□□□□ -2.1
CHD9Q3L8U1 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC1.9□□□□□ -2.1
CHD9Q3L8U1 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC1.9□□□□□ -2.1
CHD9Q3L8U1 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC1.9□□□□□ -2.1
CHD9Q3L8U1 AL035411.2-201ENST00000604022 421 ntBASIC1.9□□□□□ -2.1
CHD9Q3L8U1 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC1.9□□□□□ -2.1
CHD9Q3L8U1 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC1.9□□□□□ -2.11
CHD9Q3L8U1 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC1.9□□□□□ -2.11
CHD9Q3L8U1 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC1.9□□□□□ -2.11
CHD9Q3L8U1 AC012498.1-201ENST00000424037 437 ntBASIC1.9□□□□□ -2.11
CHD9Q3L8U1 AC092473.1-201ENST00000441098 221 ntBASIC1.9□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 85.5 ms