Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 MTND5P3-201ENST00000438536 1800 ntBASIC4.66□□□□□ -1.66
SMARCA1P28370 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
SMARCA1P28370 AC106871.1-201ENST00000568324 3102 ntBASIC4.66□□□□□ -1.66
SMARCA1P28370 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
SMARCA1P28370 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC4.66□□□□□ -1.66
SMARCA1P28370 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC4.65□□□□□ -1.66
SMARCA1P28370 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
SMARCA1P28370 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
SMARCA1P28370 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
SMARCA1P28370 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC4.65□□□□□ -1.66
SMARCA1P28370 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
SMARCA1P28370 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
SMARCA1P28370 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC4.65□□□□□ -1.67
SMARCA1P28370 MIR372-201ENST00000362225 67 ntBASIC4.65□□□□□ -1.67
SMARCA1P28370 RNU6-28P-201ENST00000362378 107 ntBASIC4.65□□□□□ -1.67
SMARCA1P28370 RNA5SP515-201ENST00000364570 118 ntBASIC4.65□□□□□ -1.67
SMARCA1P28370 RNU6-878P-201ENST00000384578 110 ntBASIC4.65□□□□□ -1.67
SMARCA1P28370 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
SMARCA1P28370 RPL21P65-201ENST00000406094 466 ntBASIC4.65□□□□□ -1.67
SMARCA1P28370 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC4.65□□□□□ -1.67
SMARCA1P28370 RAC1P3-201ENST00000416129 580 ntBASIC4.65□□□□□ -1.67
SMARCA1P28370 MTATP6P27-201ENST00000416987 621 ntBASIC4.65□□□□□ -1.67
SMARCA1P28370 OR8F1P-201ENST00000425243 930 ntBASIC4.65□□□□□ -1.67
SMARCA1P28370 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC4.65□□□□□ -1.67
SMARCA1P28370 AL117339.2-201ENST00000430475 180 ntBASIC4.65□□□□□ -1.67
SMARCA1P28370 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC4.65□□□□□ -1.67
SMARCA1P28370 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC4.65□□□□□ -1.67
SMARCA1P28370 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC4.65□□□□□ -1.67
SMARCA1P28370 FAM103A2P-201ENST00000444122 354 ntBASIC4.65□□□□□ -1.67
SMARCA1P28370 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC4.65□□□□□ -1.67
SMARCA1P28370 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC4.65□□□□□ -1.67
SMARCA1P28370 RGS5-217ENST00000451759 835 ntTSL 3 BASIC4.65□□□□□ -1.67
SMARCA1P28370 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC4.65□□□□□ -1.67
SMARCA1P28370 AP001992.1-205ENST00000462248 379 ntBASIC4.65□□□□□ -1.67
SMARCA1P28370 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC4.65□□□□□ -1.67
SMARCA1P28370 TMED11P-201ENST00000479478 690 ntBASIC4.65□□□□□ -1.67
SMARCA1P28370 AC012170.1-201ENST00000495139 359 ntBASIC4.65□□□□□ -1.67
SMARCA1P28370 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC4.65□□□□□ -1.67
SMARCA1P28370 AC116616.1-201ENST00000508815 366 ntTSL 3 BASIC4.65□□□□□ -1.67
SMARCA1P28370 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC4.65□□□□□ -1.67
SMARCA1P28370 RNU6-1003P-201ENST00000517099 105 ntBASIC4.65□□□□□ -1.67
SMARCA1P28370 MTND4LP26-201ENST00000518144 282 ntBASIC4.65□□□□□ -1.67
SMARCA1P28370 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC4.65□□□□□ -1.67
SMARCA1P28370 AP003733.3-201ENST00000524942 788 ntTSL 2 BASIC4.65□□□□□ -1.67
SMARCA1P28370 AP003122.4-201ENST00000530980 758 ntBASIC4.65□□□□□ -1.67
SMARCA1P28370 AC135001.1-201ENST00000544546 283 ntBASIC4.65□□□□□ -1.67
SMARCA1P28370 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC4.65□□□□□ -1.67
SMARCA1P28370 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC4.65□□□□□ -1.67
SMARCA1P28370 EEF1B2P4-201ENST00000551398 348 ntBASIC4.65□□□□□ -1.67
SMARCA1P28370 NTS-203ENST00000551529 801 ntTSL 3 BASIC4.65□□□□□ -1.67
SMARCA1P28370 RPL21P5-201ENST00000554662 472 ntBASIC4.65□□□□□ -1.67
SMARCA1P28370 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC4.65□□□□□ -1.67
SMARCA1P28370 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC4.65□□□□□ -1.67
SMARCA1P28370 AL355812.1-201ENST00000603215 216 ntBASIC4.65□□□□□ -1.67
SMARCA1P28370 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
SMARCA1P28370 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
SMARCA1P28370 AP001506.1-201ENST00000615444 211 ntBASIC4.65□□□□□ -1.67
SMARCA1P28370 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC4.65□□□□□ -1.67
SMARCA1P28370 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
SMARCA1P28370 AL160394.1-201ENST00000624765 724 ntBASIC4.65□□□□□ -1.67
SMARCA1P28370 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
SMARCA1P28370 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC4.65□□□□□ -1.67
SMARCA1P28370 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC4.65□□□□□ -1.67
SMARCA1P28370 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
SMARCA1P28370 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
SMARCA1P28370 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
SMARCA1P28370 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC4.64□□□□□ -1.67
SMARCA1P28370 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
SMARCA1P28370 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
SMARCA1P28370 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
SMARCA1P28370 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
SMARCA1P28370 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
SMARCA1P28370 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC4.64□□□□□ -1.67
SMARCA1P28370 RNA5SP52-201ENST00000362448 134 ntBASIC4.64□□□□□ -1.67
SMARCA1P28370 SNORD35B-201ENST00000363660 87 ntBASIC4.64□□□□□ -1.67
SMARCA1P28370 RNVU1-3-201ENST00000364313 161 ntBASIC4.64□□□□□ -1.67
SMARCA1P28370 RN7SKP226-201ENST00000364912 300 ntBASIC4.64□□□□□ -1.67
SMARCA1P28370 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
SMARCA1P28370 KLRC3-201ENST00000381903 798 ntAPPRIS P3 TSL 1 (best) BASIC4.64□□□□□ -1.67
SMARCA1P28370 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC4.64□□□□□ -1.67
SMARCA1P28370 MT-TC-201ENST00000387405 66 ntBASIC4.64□□□□□ -1.67
SMARCA1P28370 SNORD115.1-201ENST00000391109 76 ntBASIC4.64□□□□□ -1.67
SMARCA1P28370 RPS20P2-201ENST00000402520 389 ntBASIC4.64□□□□□ -1.67
SMARCA1P28370 MIR1251-201ENST00000408552 70 ntBASIC4.64□□□□□ -1.67
SMARCA1P28370 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC4.64□□□□□ -1.67
SMARCA1P28370 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
SMARCA1P28370 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC4.64□□□□□ -1.67
SMARCA1P28370 SKP1P1-201ENST00000438081 489 ntBASIC4.64□□□□□ -1.67
SMARCA1P28370 AC083863.1-201ENST00000438811 231 ntBASIC4.64□□□□□ -1.67
SMARCA1P28370 MTND6P13-201ENST00000443510 523 ntBASIC4.64□□□□□ -1.67
SMARCA1P28370 AC093392.2-201ENST00000450682 337 ntBASIC4.64□□□□□ -1.67
SMARCA1P28370 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC4.64□□□□□ -1.67
SMARCA1P28370 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC4.64□□□□□ -1.67
SMARCA1P28370 AP000926.1-201ENST00000479573 241 ntBASIC4.64□□□□□ -1.67
SMARCA1P28370 AC025445.1-201ENST00000502728 300 ntBASIC4.64□□□□□ -1.67
SMARCA1P28370 AC025554.1-201ENST00000505641 188 ntBASIC4.64□□□□□ -1.67
SMARCA1P28370 FTH1P21-201ENST00000512179 511 ntBASIC4.64□□□□□ -1.67
SMARCA1P28370 AC093853.1-201ENST00000515689 483 ntBASIC4.64□□□□□ -1.67
SMARCA1P28370 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC4.64□□□□□ -1.67
SMARCA1P28370 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC4.64□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 104.7 ms