Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC015727.1-201ENST00000572792 512 ntTSL 5 BASIC2.58□□□□□ -2
COL5A3P25940 MIR4506-201ENST00000584693 77 ntBASIC2.58□□□□□ -2
COL5A3P25940 AC013562.2-201ENST00000611632 603 ntBASIC2.58□□□□□ -2
COL5A3P25940 AC048347.1-201ENST00000624621 427 ntBASIC2.58□□□□□ -2
COL5A3P25940 GMFB-210ENST00000628554 639 ntTSL 4 BASIC2.58□□□□□ -2
COL5A3P25940 DYNAP-201ENST00000321600 2027 ntAPPRIS P3 TSL 2 BASIC2.58□□□□□ -2
COL5A3P25940 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
COL5A3P25940 AP005901.5-201ENST00000545779 1796 ntBASIC2.57□□□□□ -2
COL5A3P25940 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
COL5A3P25940 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC2.57□□□□□ -2
COL5A3P25940 MIR583-201ENST00000384846 75 ntBASIC2.57□□□□□ -2
COL5A3P25940 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC2.57□□□□□ -2
COL5A3P25940 RPL7P54-201ENST00000438336 674 ntBASIC2.57□□□□□ -2
COL5A3P25940 SPINK9-202ENST00000511717 604 ntAPPRIS ALT2 TSL 5 BASIC2.57□□□□□ -2
COL5A3P25940 AC108729.3-201ENST00000513484 108 ntBASIC2.57□□□□□ -2
COL5A3P25940 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC2.57□□□□□ -2
COL5A3P25940 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC2.57□□□□□ -2
COL5A3P25940 OR4K7P-201ENST00000580232 945 ntBASIC2.57□□□□□ -2
COL5A3P25940 AP003117.2-201ENST00000606010 545 ntBASIC2.57□□□□□ -2
COL5A3P25940 AL359198.2-201ENST00000611836 194 ntBASIC2.57□□□□□ -2
COL5A3P25940 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC2.57□□□□□ -2
COL5A3P25940 SATB1-AS1-259ENST00000629477 853 ntTSL 5 BASIC2.57□□□□□ -2
COL5A3P25940 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC2.57□□□□□ -2
COL5A3P25940 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC2.57□□□□□ -2
COL5A3P25940 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC2.56□□□□□ -2
COL5A3P25940 AL049649.1-202ENST00000412405 414 ntTSL 3 BASIC2.56□□□□□ -2
COL5A3P25940 AC005005.2-201ENST00000420779 380 ntBASIC2.56□□□□□ -2
COL5A3P25940 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC2.56□□□□□ -2
COL5A3P25940 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC2.56□□□□□ -2
COL5A3P25940 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC2.56□□□□□ -2
COL5A3P25940 UBE2V2P3-201ENST00000433562 437 ntBASIC2.56□□□□□ -2
COL5A3P25940 CBWD4P-201ENST00000445695 655 ntBASIC2.56□□□□□ -2
COL5A3P25940 RPS29P11-201ENST00000496507 171 ntBASIC2.56□□□□□ -2
COL5A3P25940 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC2.56□□□□□ -2
COL5A3P25940 SNORD116-30-201ENST00000516468 85 ntBASIC2.56□□□□□ -2
COL5A3P25940 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.56□□□□□ -2
COL5A3P25940 AC010198.2-201ENST00000550612 259 ntBASIC2.56□□□□□ -2
COL5A3P25940 MIR4781-201ENST00000585250 76 ntBASIC2.56□□□□□ -2
COL5A3P25940 AC010615.3-201ENST00000597319 394 ntBASIC2.56□□□□□ -2
COL5A3P25940 CDKN2B-AS_3.1-201ENST00000617587 144 ntBASIC2.56□□□□□ -2
COL5A3P25940 HOTTIP_4.1-201ENST00000618195 165 ntBASIC2.56□□□□□ -2
COL5A3P25940 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC2.56□□□□□ -2
COL5A3P25940 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC2.56□□□□□ -2
COL5A3P25940 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
COL5A3P25940 RNU6-697P-201ENST00000363348 107 ntBASIC2.56□□□□□ -2
COL5A3P25940 RNU6-1140P-201ENST00000410517 106 ntBASIC2.56□□□□□ -2
COL5A3P25940 RBM6-203ENST00000421682 684 ntTSL 2 BASIC2.56□□□□□ -2
COL5A3P25940 UBE2V2P1-201ENST00000434717 398 ntBASIC2.56□□□□□ -2
COL5A3P25940 RAB9AP5-201ENST00000437794 597 ntBASIC2.56□□□□□ -2
COL5A3P25940 RAB9AP2-201ENST00000443911 597 ntBASIC2.56□□□□□ -2
COL5A3P25940 RPL7P31-201ENST00000450192 724 ntBASIC2.56□□□□□ -2
COL5A3P25940 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC2.56□□□□□ -2
COL5A3P25940 FAM92A1P1-201ENST00000528023 890 ntBASIC2.56□□□□□ -2
COL5A3P25940 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC2.56□□□□□ -2
COL5A3P25940 AC007536.1-201ENST00000533382 349 ntBASIC2.56□□□□□ -2
COL5A3P25940 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC2.56□□□□□ -2
COL5A3P25940 RAB3IP-214ENST00000550847 670 ntTSL 3 BASIC2.56□□□□□ -2
COL5A3P25940 MIR4255-201ENST00000579351 72 ntBASIC2.56□□□□□ -2
COL5A3P25940 AC004160.1-210ENST00000599875 689 ntTSL 5 BASIC2.56□□□□□ -2
COL5A3P25940 AC004241.3-201ENST00000611728 517 ntBASIC2.56□□□□□ -2
COL5A3P25940 AC116447.1-201ENST00000613153 453 ntBASIC2.56□□□□□ -2
COL5A3P25940 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC2.56□□□□□ -2
COL5A3P25940 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.56□□□□□ -2
COL5A3P25940 OR5H15-202ENST00000641450 1229 ntAPPRIS P1 BASIC2.56□□□□□ -2
COL5A3P25940 AF127577.6-201ENST00000623352 2191 ntBASIC2.56□□□□□ -2
COL5A3P25940 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.56□□□□□ -2
COL5A3P25940 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC2.55□□□□□ -2
COL5A3P25940 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.55□□□□□ -2
COL5A3P25940 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC2.55□□□□□ -2
COL5A3P25940 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
COL5A3P25940 CYP3A43-205ENST00000415413 990 ntTSL 5 BASIC2.55□□□□□ -2
COL5A3P25940 AC009414.1-201ENST00000427200 443 ntBASIC2.55□□□□□ -2
COL5A3P25940 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC2.55□□□□□ -2
COL5A3P25940 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC2.55□□□□□ -2
COL5A3P25940 MTCYBP14-201ENST00000457471 715 ntBASIC2.55□□□□□ -2
COL5A3P25940 PDZD9-203ENST00000537222 1068 ntTSL 3 BASIC2.55□□□□□ -2
COL5A3P25940 LRRC37A5P-203ENST00000580181 585 ntBASIC2.55□□□□□ -2
COL5A3P25940 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC2.55□□□□□ -2
COL5A3P25940 AC006557.3-201ENST00000592926 517 ntTSL 3 BASIC2.55□□□□□ -2
COL5A3P25940 AC079791.1-201ENST00000605356 973 ntBASIC2.55□□□□□ -2
COL5A3P25940 AC108479.2-201ENST00000617314 601 ntBASIC2.55□□□□□ -2
COL5A3P25940 CEP290-202ENST00000397838 2421 ntTSL 5 BASIC2.55□□□□□ -2
COL5A3P25940 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC2.54□□□□□ -2
COL5A3P25940 AL445685.2-201ENST00000422551 342 ntBASIC2.54□□□□□ -2
COL5A3P25940 TPTE2P1-204ENST00000435256 593 ntBASIC2.54□□□□□ -2
COL5A3P25940 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC2.54□□□□□ -2
COL5A3P25940 AL445669.2-201ENST00000454425 421 ntBASIC2.54□□□□□ -2
COL5A3P25940 AP000705.1-201ENST00000454567 350 ntBASIC2.54□□□□□ -2
COL5A3P25940 AC233279.1-201ENST00000455300 423 ntBASIC2.54□□□□□ -2
COL5A3P25940 RNU6-775P-201ENST00000459318 96 ntBASIC2.54□□□□□ -2
COL5A3P25940 HAUS1P1-201ENST00000505275 832 ntBASIC2.54□□□□□ -2
COL5A3P25940 AP001960.1-201ENST00000506494 658 ntBASIC2.54□□□□□ -2
COL5A3P25940 AC022784.5-201ENST00000522241 437 ntBASIC2.54□□□□□ -2
COL5A3P25940 C11orf65-206ENST00000529391 973 ntAPPRIS P1 TSL 2 BASIC2.54□□□□□ -2
COL5A3P25940 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC2.54□□□□□ -2
COL5A3P25940 AC084033.1-201ENST00000550830 633 ntBASIC2.54□□□□□ -2
COL5A3P25940 AC128687.1-201ENST00000605304 619 ntBASIC2.54□□□□□ -2
COL5A3P25940 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
COL5A3P25940 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
COL5A3P25940 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC2.54□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 105.7 ms