Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.05□□□□□ -2.08
HMGA1P17096 SNORA80E-201ENST00000384744 137 ntBASIC2.05□□□□□ -2.08
HMGA1P17096 5S_rRNA.2-201ENST00000391293 112 ntBASIC2.05□□□□□ -2.08
HMGA1P17096 AC019129.1-201ENST00000403786 261 ntBASIC2.05□□□□□ -2.08
HMGA1P17096 AC092638.1-201ENST00000411966 1275 ntBASIC2.05□□□□□ -2.08
HMGA1P17096 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC2.05□□□□□ -2.08
HMGA1P17096 AL050338.1-201ENST00000445585 786 ntTSL 3 BASIC2.05□□□□□ -2.08
HMGA1P17096 HMGB1P48-201ENST00000446155 598 ntBASIC2.05□□□□□ -2.08
HMGA1P17096 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC2.05□□□□□ -2.08
HMGA1P17096 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC2.05□□□□□ -2.08
HMGA1P17096 AC017007.3-201ENST00000479865 435 ntBASIC2.05□□□□□ -2.08
HMGA1P17096 MTAPP1-201ENST00000489154 819 ntBASIC2.05□□□□□ -2.08
HMGA1P17096 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC2.05□□□□□ -2.08
HMGA1P17096 AC084706.1-201ENST00000521879 558 ntTSL 2 BASIC2.05□□□□□ -2.08
HMGA1P17096 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC2.05□□□□□ -2.08
HMGA1P17096 AC239860.2-201ENST00000525886 270 ntBASIC2.05□□□□□ -2.08
HMGA1P17096 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC2.05□□□□□ -2.08
HMGA1P17096 AK6P1-201ENST00000540219 478 ntBASIC2.05□□□□□ -2.08
HMGA1P17096 AC007688.2-201ENST00000545158 369 ntTSL 3 BASIC2.05□□□□□ -2.08
HMGA1P17096 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC2.05□□□□□ -2.08
HMGA1P17096 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC2.05□□□□□ -2.08
HMGA1P17096 SNORD39.2-201ENST00000579995 76 ntBASIC2.05□□□□□ -2.08
HMGA1P17096 AC009977.1-201ENST00000586015 570 ntBASIC2.05□□□□□ -2.08
HMGA1P17096 AC010680.4-201ENST00000605334 543 ntBASIC2.05□□□□□ -2.08
HMGA1P17096 AP004247.3-201ENST00000608682 624 ntBASIC2.05□□□□□ -2.08
HMGA1P17096 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC2.05□□□□□ -2.08
HMGA1P17096 USP44-208ENST00000552440 1818 ntTSL 5 BASIC2.05□□□□□ -2.08
HMGA1P17096 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.05□□□□□ -2.08
HMGA1P17096 AC002543.1-201ENST00000299783 1954 ntBASIC2.04□□□□□ -2.08
HMGA1P17096 LINC00446-201ENST00000414743 459 ntTSL 5 BASIC2.04□□□□□ -2.08
HMGA1P17096 TRAPPC2P9-201ENST00000434556 343 ntBASIC2.04□□□□□ -2.08
HMGA1P17096 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC2.04□□□□□ -2.08
HMGA1P17096 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC2.04□□□□□ -2.08
HMGA1P17096 HMGB1P15-201ENST00000453854 435 ntBASIC2.04□□□□□ -2.08
HMGA1P17096 LINC01075-201ENST00000455977 370 ntTSL 3 BASIC2.04□□□□□ -2.08
HMGA1P17096 AC012181.1-201ENST00000479895 423 ntBASIC2.04□□□□□ -2.08
HMGA1P17096 AC078918.1-201ENST00000498515 228 ntBASIC2.04□□□□□ -2.08
HMGA1P17096 LINC01455-201ENST00000503167 561 ntTSL 4 BASIC2.04□□□□□ -2.08
HMGA1P17096 AC106791.1-201ENST00000514616 827 ntTSL 5 BASIC2.04□□□□□ -2.08
HMGA1P17096 SNORA31.11-201ENST00000516528 139 ntBASIC2.04□□□□□ -2.08
HMGA1P17096 CMC2-208ENST00000564249 890 ntAPPRIS P1 TSL 5 BASIC2.04□□□□□ -2.08
HMGA1P17096 AC011494.1-201ENST00000596454 237 ntBASIC2.04□□□□□ -2.08
HMGA1P17096 AC008687.2-201ENST00000597865 520 ntBASIC2.04□□□□□ -2.08
HMGA1P17096 YWHAQP7-201ENST00000603536 658 ntBASIC2.04□□□□□ -2.08
HMGA1P17096 RPAP2P1-201ENST00000603626 1168 ntBASIC2.04□□□□□ -2.08
HMGA1P17096 AC090425.2-201ENST00000608818 501 ntBASIC2.04□□□□□ -2.08
HMGA1P17096 SNHG22-203ENST00000617833 660 ntBASIC2.04□□□□□ -2.08
HMGA1P17096 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC2.04□□□□□ -2.08
HMGA1P17096 AC092650.2-201ENST00000619984 902 ntBASIC2.04□□□□□ -2.08
HMGA1P17096 AC005336.3-201ENST00000623833 2679 ntBASIC2.04□□□□□ -2.08
HMGA1P17096 AC090617.7-201ENST00000623952 126 ntBASIC2.04□□□□□ -2.08
HMGA1P17096 AC016542.2-201ENST00000624201 619 ntBASIC2.04□□□□□ -2.08
HMGA1P17096 IQCM-206ENST00000636793 1900 ntAPPRIS P5 TSL 5 BASIC2.04□□□□□ -2.08
HMGA1P17096 AC132825.8-201ENST00000640783 297 ntBASIC2.04□□□□□ -2.08
HMGA1P17096 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC2.04□□□□□ -2.08
HMGA1P17096 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.04□□□□□ -2.08
HMGA1P17096 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC2.03□□□□□ -2.08
HMGA1P17096 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC2.03□□□□□ -2.08
HMGA1P17096 RNA5SP160-201ENST00000364866 120 ntBASIC2.03□□□□□ -2.08
HMGA1P17096 CUBN-201ENST00000377823 705 ntTSL 3 BASIC2.03□□□□□ -2.08
HMGA1P17096 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC2.03□□□□□ -2.08
HMGA1P17096 RPL21P75-201ENST00000396599 483 ntBASIC2.03□□□□□ -2.08
HMGA1P17096 RPL21P28-201ENST00000401418 483 ntBASIC2.03□□□□□ -2.08
HMGA1P17096 AL592114.1-201ENST00000403842 483 ntBASIC2.03□□□□□ -2.08
HMGA1P17096 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC2.03□□□□□ -2.08
HMGA1P17096 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC2.03□□□□□ -2.08
HMGA1P17096 CBWD4P-201ENST00000445695 655 ntBASIC2.03□□□□□ -2.08
HMGA1P17096 RPL23AP20-201ENST00000447965 421 ntBASIC2.03□□□□□ -2.08
HMGA1P17096 AL589963.1-201ENST00000449282 727 ntTSL 3 BASIC2.03□□□□□ -2.08
HMGA1P17096 AC233279.1-201ENST00000455300 423 ntBASIC2.03□□□□□ -2.08
HMGA1P17096 RPL21P39-201ENST00000463605 483 ntBASIC2.03□□□□□ -2.08
HMGA1P17096 AC011979.1-201ENST00000472300 483 ntBASIC2.03□□□□□ -2.08
HMGA1P17096 RPL21P93-201ENST00000480465 489 ntBASIC2.03□□□□□ -2.08
HMGA1P17096 AC233702.1-201ENST00000482905 502 ntBASIC2.03□□□□□ -2.08
HMGA1P17096 AC093591.1-201ENST00000491435 481 ntBASIC2.03□□□□□ -2.08
HMGA1P17096 RPL21P16-201ENST00000495531 483 ntBASIC2.03□□□□□ -2.08
HMGA1P17096 CTD-2350J17.1-201ENST00000509228 362 ntTSL 2 BASIC2.03□□□□□ -2.08
HMGA1P17096 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC2.03□□□□□ -2.08
HMGA1P17096 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC2.03□□□□□ -2.08
HMGA1P17096 PPFIA2-AS1-210ENST00000553197 875 ntTSL 5 BASIC2.03□□□□□ -2.08
HMGA1P17096 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC2.03□□□□□ -2.08
HMGA1P17096 AL161713.1-201ENST00000555538 145 ntBASIC2.03□□□□□ -2.08
HMGA1P17096 AC244517.12-201ENST00000623581 663 ntBASIC2.03□□□□□ -2.08
HMGA1P17096 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.03□□□□□ -2.08
HMGA1P17096 AC103988.1-201ENST00000566382 2177 ntBASIC2.03□□□□□ -2.08
HMGA1P17096 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC2.03□□□□□ -2.08
HMGA1P17096 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC2.03□□□□□ -2.08
HMGA1P17096 AC011978.2-201ENST00000569835 2054 ntBASIC2.03□□□□□ -2.08
HMGA1P17096 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC2.03□□□□□ -2.08
HMGA1P17096 AC011460.1-201ENST00000636268 1834 ntBASIC2.03□□□□□ -2.09
HMGA1P17096 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
HMGA1P17096 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.02□□□□□ -2.09
HMGA1P17096 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.02□□□□□ -2.09
HMGA1P17096 METTL21EP-201ENST00000298105 713 ntBASIC2.02□□□□□ -2.09
HMGA1P17096 RNA5SP99-201ENST00000364020 114 ntBASIC2.02□□□□□ -2.09
HMGA1P17096 MIR583-201ENST00000384846 75 ntBASIC2.02□□□□□ -2.09
HMGA1P17096 SNORA40.18-201ENST00000391200 128 ntBASIC2.02□□□□□ -2.09
HMGA1P17096 AC073464.3-201ENST00000422564 712 ntBASIC2.02□□□□□ -2.09
HMGA1P17096 AL121882.1-201ENST00000422893 417 ntBASIC2.02□□□□□ -2.09
HMGA1P17096 AC022022.1-201ENST00000430304 178 ntBASIC2.02□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 116 ms