Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 RPS24P8-201ENST00000431490 402 ntBASIC2.02□□□□□ -2.09
VCANP13611 CLEC5A-202ENST00000438351 743 ntTSL 3 BASIC2.02□□□□□ -2.09
VCANP13611 CALM1P2-201ENST00000452941 448 ntBASIC2.02□□□□□ -2.09
VCANP13611 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC2.02□□□□□ -2.09
VCANP13611 DDX10P1-201ENST00000448545 1933 ntBASIC2.02□□□□□ -2.09
VCANP13611 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
VCANP13611 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
VCANP13611 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
VCANP13611 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC2.02□□□□□ -2.09
VCANP13611 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
VCANP13611 AC092650.2-201ENST00000619984 902 ntBASIC2.02□□□□□ -2.09
VCANP13611 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC2.02□□□□□ -2.09
VCANP13611 RNU6-1032P-201ENST00000384100 107 ntBASIC2.01□□□□□ -2.09
VCANP13611 AC116535.2-201ENST00000532365 441 ntTSL 5 BASIC2.01□□□□□ -2.09
VCANP13611 MIR151B-201ENST00000584249 96 ntBASIC2.01□□□□□ -2.09
VCANP13611 AL031274.2-201ENST00000599419 203 ntBASIC2.01□□□□□ -2.09
VCANP13611 PSMA6P4-201ENST00000603247 718 ntBASIC2.01□□□□□ -2.09
VCANP13611 uc_338.5-201ENST00000611839 155 ntBASIC2.01□□□□□ -2.09
VCANP13611 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC2.01□□□□□ -2.09
VCANP13611 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
VCANP13611 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
VCANP13611 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
VCANP13611 RNU1-87P-201ENST00000363727 170 ntBASIC2.01□□□□□ -2.09
VCANP13611 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC2.01□□□□□ -2.09
VCANP13611 RNU2-6P-201ENST00000411404 190 ntBASIC2.01□□□□□ -2.09
VCANP13611 RPL7P46-201ENST00000425129 740 ntBASIC2.01□□□□□ -2.09
VCANP13611 LNCPRESS2-201ENST00000502518 616 ntTSL 5 BASIC2.01□□□□□ -2.09
VCANP13611 AC078906.1-201ENST00000523602 798 ntTSL 3 BASIC2.01□□□□□ -2.09
VCANP13611 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC2.01□□□□□ -2.09
VCANP13611 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC2.01□□□□□ -2.09
VCANP13611 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC2.01□□□□□ -2.09
VCANP13611 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC2.01□□□□□ -2.09
VCANP13611 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC2.01□□□□□ -2.09
VCANP13611 AL049548.1-201ENST00000458194 385 ntTSL 2 BASIC2.01□□□□□ -2.09
VCANP13611 RNU6ATAC12P-201ENST00000516542 115 ntBASIC2.01□□□□□ -2.09
VCANP13611 IGLVIV-53-201ENST00000520107 367 ntBASIC2.01□□□□□ -2.09
VCANP13611 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
VCANP13611 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC2□□□□□ -2.09
VCANP13611 AL590432.1-201ENST00000420071 566 ntTSL 2 BASIC2□□□□□ -2.09
VCANP13611 AL161670.1-201ENST00000554348 137 ntBASIC2□□□□□ -2.09
VCANP13611 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC2□□□□□ -2.09
VCANP13611 AC104574.1-201ENST00000561182 925 ntTSL 1 (best) BASIC2□□□□□ -2.09
VCANP13611 AL645944.1-201ENST00000603857 493 ntBASIC2□□□□□ -2.09
VCANP13611 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC2□□□□□ -2.09
VCANP13611 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC2□□□□□ -2.09
VCANP13611 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC2□□□□□ -2.09
VCANP13611 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC2□□□□□ -2.09
VCANP13611 AL356489.2-201ENST00000566968 3528 ntBASIC2□□□□□ -2.09
VCANP13611 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC2□□□□□ -2.09
VCANP13611 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC2□□□□□ -2.09
VCANP13611 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC2□□□□□ -2.09
VCANP13611 AL390334.1-201ENST00000556395 450 ntBASIC2□□□□□ -2.09
VCANP13611 RN7SL793P-201ENST00000583259 296 ntBASIC2□□□□□ -2.09
VCANP13611 AC011712.1-201ENST00000588959 234 ntBASIC2□□□□□ -2.09
VCANP13611 Y_RNA.783-201ENST00000613546 102 ntBASIC2□□□□□ -2.09
VCANP13611 AC093311.1-201ENST00000506586 2021 ntBASIC2□□□□□ -2.09
VCANP13611 TTN-204ENST00000360870 18218 ntTSL 5 BASIC2□□□□□ -2.09
VCANP13611 OR1L3-201ENST00000304820 1118 ntAPPRIS P1 BASIC1.99□□□□□ -2.09
VCANP13611 U8.8-201ENST00000365399 135 ntBASIC1.99□□□□□ -2.09
VCANP13611 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC1.99□□□□□ -2.09
VCANP13611 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC1.99□□□□□ -2.09
VCANP13611 HMGB1P41-201ENST00000520234 440 ntBASIC1.99□□□□□ -2.09
VCANP13611 AL035411.2-201ENST00000604022 421 ntBASIC1.99□□□□□ -2.09
VCANP13611 AC092326.2-201ENST00000624772 1561 ntBASIC1.99□□□□□ -2.09
VCANP13611 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
VCANP13611 RNU1-138P-201ENST00000384093 164 ntBASIC1.99□□□□□ -2.09
VCANP13611 PLCE1-AS2-201ENST00000419353 459 ntTSL 5 BASIC1.99□□□□□ -2.09
VCANP13611 RPL36AP6-201ENST00000435770 321 ntBASIC1.99□□□□□ -2.09
VCANP13611 MTCYBP31-201ENST00000438855 1122 ntBASIC1.99□□□□□ -2.09
VCANP13611 AL365204.2-201ENST00000446754 687 ntTSL 2 BASIC1.99□□□□□ -2.09
VCANP13611 RPL9P33-201ENST00000484311 566 ntBASIC1.99□□□□□ -2.09
VCANP13611 RPL23AP55-201ENST00000498163 452 ntBASIC1.99□□□□□ -2.09
VCANP13611 CBX3P4-201ENST00000538909 354 ntBASIC1.99□□□□□ -2.09
VCANP13611 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC1.99□□□□□ -2.09
VCANP13611 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC1.99□□□□□ -2.09
VCANP13611 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
VCANP13611 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC1.99□□□□□ -2.09
VCANP13611 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.99□□□□□ -2.09
VCANP13611 RNU6-516P-201ENST00000411381 104 ntBASIC1.99□□□□□ -2.09
VCANP13611 AMD1P2-201ENST00000412936 992 ntBASIC1.99□□□□□ -2.09
VCANP13611 MTCYBP7-201ENST00000419540 1134 ntBASIC1.99□□□□□ -2.09
VCANP13611 RNU6ATAC9P-201ENST00000516210 116 ntBASIC1.99□□□□□ -2.09
VCANP13611 AL121821.2-201ENST00000556081 394 ntBASIC1.99□□□□□ -2.09
VCANP13611 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC1.99□□□□□ -2.09
VCANP13611 AC120053.1-201ENST00000607706 736 ntBASIC1.99□□□□□ -2.09
VCANP13611 AC131902.3-201ENST00000611767 581 ntBASIC1.99□□□□□ -2.09
VCANP13611 RNA5SP139-201ENST00000364340 117 ntBASIC1.98□□□□□ -2.09
VCANP13611 RNY1P4-201ENST00000384595 115 ntBASIC1.98□□□□□ -2.09
VCANP13611 RNU6-1105P-201ENST00000384774 107 ntBASIC1.98□□□□□ -2.09
VCANP13611 SAR1AP2-201ENST00000392696 594 ntBASIC1.98□□□□□ -2.09
VCANP13611 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC1.98□□□□□ -2.09
VCANP13611 AC104564.1-201ENST00000493028 407 ntBASIC1.98□□□□□ -2.09
VCANP13611 AC025300.1-201ENST00000526616 384 ntTSL 3 BASIC1.98□□□□□ -2.09
VCANP13611 ZFAND6-208ENST00000558688 780 ntTSL 2 BASIC1.98□□□□□ -2.09
VCANP13611 MIR4421-201ENST00000578133 69 ntBASIC1.98□□□□□ -2.09
VCANP13611 AL583832.1-201ENST00000603227 784 ntBASIC1.98□□□□□ -2.09
VCANP13611 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.98□□□□□ -2.09
VCANP13611 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
VCANP13611 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
VCANP13611 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 102.7 ms