Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 AL645937.1-202ENST00000421799 937 ntBASIC3.21□□□□□ -1.9
MSH4O15457 AC023469.2-201ENST00000425983 657 ntTSL 5 BASIC3.21□□□□□ -1.9
MSH4O15457 C1DP1-201ENST00000426049 402 ntBASIC3.21□□□□□ -1.9
MSH4O15457 AC006548.1-201ENST00000427470 102 ntBASIC3.21□□□□□ -1.9
MSH4O15457 OFD1P12Y-201ENST00000427963 1207 ntBASIC3.21□□□□□ -1.9
MSH4O15457 OFD1P13Y-201ENST00000431179 1232 ntBASIC3.21□□□□□ -1.9
MSH4O15457 RPS20P5-201ENST00000434808 360 ntBASIC3.21□□□□□ -1.9
MSH4O15457 MTCYBP31-201ENST00000438855 1122 ntBASIC3.21□□□□□ -1.9
MSH4O15457 AL831737.1-201ENST00000441288 271 ntBASIC3.21□□□□□ -1.9
MSH4O15457 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC3.21□□□□□ -1.9
MSH4O15457 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC3.21□□□□□ -1.9
MSH4O15457 PABPC1P3-201ENST00000469174 459 ntBASIC3.21□□□□□ -1.9
MSH4O15457 LINC02053-202ENST00000488262 940 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
MSH4O15457 AP001025.2-201ENST00000490908 477 ntBASIC3.21□□□□□ -1.9
MSH4O15457 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
MSH4O15457 SUMO2P5-201ENST00000506790 245 ntBASIC3.21□□□□□ -1.9
MSH4O15457 AC111000.2-201ENST00000507775 550 ntBASIC3.21□□□□□ -1.9
MSH4O15457 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC3.21□□□□□ -1.9
MSH4O15457 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC3.21□□□□□ -1.9
MSH4O15457 MTCYBP27-201ENST00000555160 670 ntBASIC3.21□□□□□ -1.9
MSH4O15457 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC3.21□□□□□ -1.9
MSH4O15457 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC3.21□□□□□ -1.9
MSH4O15457 AC025682.1-201ENST00000582389 437 ntTSL 5 BASIC3.21□□□□□ -1.9
MSH4O15457 DNAJC19P3-201ENST00000594491 331 ntBASIC3.21□□□□□ -1.9
MSH4O15457 AL162591.3-201ENST00000607963 681 ntTSL 3 BASIC3.21□□□□□ -1.9
MSH4O15457 AC090425.2-201ENST00000608818 501 ntBASIC3.21□□□□□ -1.9
MSH4O15457 AC092954.1-201ENST00000609121 445 ntBASIC3.21□□□□□ -1.9
MSH4O15457 AC099778.2-201ENST00000610904 211 ntBASIC3.21□□□□□ -1.9
MSH4O15457 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC3.21□□□□□ -1.9
MSH4O15457 CR381572.1-201ENST00000625098 102 ntBASIC3.21□□□□□ -1.9
MSH4O15457 AC106858.1-201ENST00000637497 429 ntBASIC3.21□□□□□ -1.9
MSH4O15457 MTND2P41-201ENST00000637599 773 ntBASIC3.21□□□□□ -1.9
MSH4O15457 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.2□□□□□ -1.9
MSH4O15457 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
MSH4O15457 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
MSH4O15457 UGT2A2-201ENST00000604021 1544 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
MSH4O15457 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
MSH4O15457 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
MSH4O15457 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
MSH4O15457 ANKRD36P1-201ENST00000344424 659 ntBASIC3.2□□□□□ -1.9
MSH4O15457 Y_RNA.111-201ENST00000363248 100 ntBASIC3.2□□□□□ -1.9
MSH4O15457 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC3.2□□□□□ -1.9
MSH4O15457 RNU6-1181P-201ENST00000384191 106 ntBASIC3.2□□□□□ -1.9
MSH4O15457 RNU6-1257P-201ENST00000384625 110 ntBASIC3.2□□□□□ -1.9
MSH4O15457 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
MSH4O15457 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC3.2□□□□□ -1.9
MSH4O15457 AL592148.1-201ENST00000413568 445 ntBASIC3.2□□□□□ -1.9
MSH4O15457 AC007390.1-201ENST00000415722 356 ntBASIC3.2□□□□□ -1.9
MSH4O15457 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC3.2□□□□□ -1.9
MSH4O15457 USP9YP21-201ENST00000420603 432 ntBASIC3.2□□□□□ -1.9
MSH4O15457 RPL21P66-201ENST00000426566 466 ntBASIC3.2□□□□□ -1.9
MSH4O15457 RAC1P8-201ENST00000427086 527 ntBASIC3.2□□□□□ -1.9
MSH4O15457 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC3.2□□□□□ -1.9
MSH4O15457 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC3.2□□□□□ -1.9
MSH4O15457 AL050338.2-202ENST00000431609 956 ntTSL 2 BASIC3.2□□□□□ -1.9
MSH4O15457 NEK4P1-201ENST00000433383 879 ntBASIC3.2□□□□□ -1.9
MSH4O15457 VDAC1P3-201ENST00000434069 851 ntBASIC3.2□□□□□ -1.9
MSH4O15457 SETP5-201ENST00000437270 562 ntBASIC3.2□□□□□ -1.9
MSH4O15457 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC3.2□□□□□ -1.9
MSH4O15457 MTCYBP42-201ENST00000444653 1130 ntBASIC3.2□□□□□ -1.9
MSH4O15457 MTCO1P48-201ENST00000448024 1096 ntBASIC3.2□□□□□ -1.9
MSH4O15457 AC010285.1-201ENST00000470580 392 ntBASIC3.2□□□□□ -1.9
MSH4O15457 VPS26AP1-201ENST00000483197 979 ntBASIC3.2□□□□□ -1.9
MSH4O15457 AC073359.1-201ENST00000486545 521 ntTSL 2 BASIC3.2□□□□□ -1.9
MSH4O15457 AC093767.1-201ENST00000504523 156 ntBASIC3.2□□□□□ -1.9
MSH4O15457 BOLA3P3-201ENST00000505182 232 ntBASIC3.2□□□□□ -1.9
MSH4O15457 HMGB1P22-201ENST00000505315 124 ntBASIC3.2□□□□□ -1.9
MSH4O15457 AC091826.1-201ENST00000514065 313 ntBASIC3.2□□□□□ -1.9
MSH4O15457 RN7SKP132-201ENST00000516001 208 ntBASIC3.2□□□□□ -1.9
MSH4O15457 RNA5SP367-201ENST00000516557 118 ntBASIC3.2□□□□□ -1.9
MSH4O15457 RNU6-1028P-201ENST00000517164 93 ntBASIC3.2□□□□□ -1.9
MSH4O15457 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC3.2□□□□□ -1.9
MSH4O15457 AC109635.4-202ENST00000531666 412 ntBASIC3.2□□□□□ -1.9
MSH4O15457 AC079600.2-201ENST00000550076 130 ntBASIC3.2□□□□□ -1.9
MSH4O15457 AC091588.1-201ENST00000578504 359 ntTSL 3 BASIC3.2□□□□□ -1.9
MSH4O15457 MIR5708-201ENST00000579723 85 ntBASIC3.2□□□□□ -1.9
MSH4O15457 MIR3690-201ENST00000580266 75 ntBASIC3.2□□□□□ -1.9
MSH4O15457 AC103881.1-201ENST00000603476 538 ntBASIC3.2□□□□□ -1.9
MSH4O15457 AC093673.2-201ENST00000609674 331 ntBASIC3.2□□□□□ -1.9
MSH4O15457 AC006329.2-201ENST00000611491 394 ntBASIC3.2□□□□□ -1.9
MSH4O15457 AL355493.4-201ENST00000618530 292 ntBASIC3.2□□□□□ -1.9
MSH4O15457 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.2□□□□□ -1.9
MSH4O15457 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC3.2□□□□□ -1.9
MSH4O15457 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC3.2□□□□□ -1.9
MSH4O15457 AC092326.2-201ENST00000624772 1561 ntBASIC3.2□□□□□ -1.9
MSH4O15457 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
MSH4O15457 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC3.19□□□□□ -1.9
MSH4O15457 OR5J1P-201ENST00000313544 939 ntBASIC3.19□□□□□ -1.9
MSH4O15457 RNU6-1249P-201ENST00000363237 111 ntBASIC3.19□□□□□ -1.9
MSH4O15457 RNU6-707P-201ENST00000364647 95 ntBASIC3.19□□□□□ -1.9
MSH4O15457 SNORA51.6-201ENST00000384151 125 ntBASIC3.19□□□□□ -1.9
MSH4O15457 MIR512-1-201ENST00000384913 84 ntBASIC3.19□□□□□ -1.9
MSH4O15457 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
MSH4O15457 Y_RNA.578-201ENST00000390903 88 ntBASIC3.19□□□□□ -1.9
MSH4O15457 RNU6-821P-201ENST00000390995 107 ntBASIC3.19□□□□□ -1.9
MSH4O15457 RNU6-1300P-201ENST00000391046 108 ntBASIC3.19□□□□□ -1.9
MSH4O15457 U3.26-201ENST00000391236 204 ntBASIC3.19□□□□□ -1.9
MSH4O15457 SLC9B1P2-201ENST00000398120 1184 ntBASIC3.19□□□□□ -1.9
MSH4O15457 AL024474.1-201ENST00000404655 591 ntBASIC3.19□□□□□ -1.9
MSH4O15457 AC106053.1-201ENST00000431697 368 ntTSL 3 BASIC3.19□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms