Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 CBX3P5-201ENST00000552017 521 ntBASIC4.75□□□□□ -1.65
CBX4O00257 AC136624.4-201ENST00000573044 370 ntBASIC4.75□□□□□ -1.65
CBX4O00257 GLUD1P4-201ENST00000590914 418 ntBASIC4.75□□□□□ -1.65
CBX4O00257 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC4.75□□□□□ -1.65
CBX4O00257 AP001429.1-201ENST00000602568 530 ntBASIC4.75□□□□□ -1.65
CBX4O00257 AC020910.2-201ENST00000603635 610 ntBASIC4.75□□□□□ -1.65
CBX4O00257 LARP7P1-201ENST00000605576 316 ntBASIC4.75□□□□□ -1.65
CBX4O00257 AP002360.3-201ENST00000607673 710 ntBASIC4.75□□□□□ -1.65
CBX4O00257 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC4.75□□□□□ -1.65
CBX4O00257 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC4.75□□□□□ -1.65
CBX4O00257 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC4.75□□□□□ -1.65
CBX4O00257 YWHAEP7-203ENST00000622054 312 ntBASIC4.75□□□□□ -1.65
CBX4O00257 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
CBX4O00257 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
CBX4O00257 DDX18P3-201ENST00000404856 2007 ntBASIC4.75□□□□□ -1.65
CBX4O00257 CKAP2P1-201ENST00000555477 2049 ntBASIC4.75□□□□□ -1.65
CBX4O00257 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC4.75□□□□□ -1.65
CBX4O00257 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
CBX4O00257 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC4.75□□□□□ -1.65
CBX4O00257 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
CBX4O00257 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
CBX4O00257 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC4.74□□□□□ -1.65
CBX4O00257 AC083843.3-201ENST00000623679 2186 ntBASIC4.74□□□□□ -1.65
CBX4O00257 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
CBX4O00257 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
CBX4O00257 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC4.74□□□□□ -1.65
CBX4O00257 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC4.74□□□□□ -1.65
CBX4O00257 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
CBX4O00257 Y_RNA.381-201ENST00000365666 102 ntBASIC4.74□□□□□ -1.65
CBX4O00257 SNORA70F-201ENST00000384142 135 ntBASIC4.74□□□□□ -1.65
CBX4O00257 MIR1-2-201ENST00000384961 85 ntBASIC4.74□□□□□ -1.65
CBX4O00257 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC4.74□□□□□ -1.65
CBX4O00257 RNU6-908P-201ENST00000410160 94 ntBASIC4.74□□□□□ -1.65
CBX4O00257 BEND7P1-201ENST00000422058 457 ntBASIC4.74□□□□□ -1.65
CBX4O00257 RPL23AP38-201ENST00000423801 469 ntBASIC4.74□□□□□ -1.65
CBX4O00257 AC012498.1-201ENST00000424037 437 ntBASIC4.74□□□□□ -1.65
CBX4O00257 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC4.74□□□□□ -1.65
CBX4O00257 RPEP3-201ENST00000425462 676 ntBASIC4.74□□□□□ -1.65
CBX4O00257 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC4.74□□□□□ -1.65
CBX4O00257 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC4.74□□□□□ -1.65
CBX4O00257 RPS20P5-201ENST00000434808 360 ntBASIC4.74□□□□□ -1.65
CBX4O00257 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC4.74□□□□□ -1.65
CBX4O00257 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC4.74□□□□□ -1.65
CBX4O00257 AC092832.2-201ENST00000456621 389 ntTSL 2 BASIC4.74□□□□□ -1.65
CBX4O00257 RPL36AP13-201ENST00000457490 317 ntBASIC4.74□□□□□ -1.65
CBX4O00257 RNU7-63P-201ENST00000459054 62 ntBASIC4.74□□□□□ -1.65
CBX4O00257 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC4.74□□□□□ -1.65
CBX4O00257 RNU7-51P-201ENST00000516560 62 ntBASIC4.74□□□□□ -1.65
CBX4O00257 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC4.74□□□□□ -1.65
CBX4O00257 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC4.74□□□□□ -1.65
CBX4O00257 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC4.74□□□□□ -1.65
CBX4O00257 CARD16-203ENST00000525374 503 ntTSL 3 BASIC4.74□□□□□ -1.65
CBX4O00257 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC4.74□□□□□ -1.65
CBX4O00257 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC4.74□□□□□ -1.65
CBX4O00257 PDCD5P1-201ENST00000543528 309 ntBASIC4.74□□□□□ -1.65
CBX4O00257 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC4.74□□□□□ -1.65
CBX4O00257 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC4.74□□□□□ -1.65
CBX4O00257 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC4.74□□□□□ -1.65
CBX4O00257 AC074050.1-201ENST00000563247 211 ntBASIC4.74□□□□□ -1.65
CBX4O00257 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC4.74□□□□□ -1.65
CBX4O00257 AC090948.1-201ENST00000607464 549 ntBASIC4.74□□□□□ -1.65
CBX4O00257 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
CBX4O00257 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC4.74□□□□□ -1.65
CBX4O00257 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
CBX4O00257 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
CBX4O00257 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC4.74□□□□□ -1.65
CBX4O00257 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC4.73□□□□□ -1.65
CBX4O00257 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
CBX4O00257 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
CBX4O00257 PAPPA-AS1-201ENST00000445861 2450 ntBASIC4.73□□□□□ -1.65
CBX4O00257 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC4.73□□□□□ -1.65
CBX4O00257 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
CBX4O00257 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC4.73□□□□□ -1.65
CBX4O00257 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC4.73□□□□□ -1.65
CBX4O00257 AC244517.1-201ENST00000606030 2086 ntBASIC4.73□□□□□ -1.65
CBX4O00257 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
CBX4O00257 HSPE1P11-201ENST00000339579 310 ntBASIC4.73□□□□□ -1.65
CBX4O00257 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
CBX4O00257 Y_RNA.126-201ENST00000363382 111 ntBASIC4.73□□□□□ -1.65
CBX4O00257 RNY3P3-201ENST00000363816 102 ntBASIC4.73□□□□□ -1.65
CBX4O00257 RNA5SP397-201ENST00000391323 118 ntBASIC4.73□□□□□ -1.65
CBX4O00257 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC4.73□□□□□ -1.65
CBX4O00257 GTF2IP20-201ENST00000431663 360 ntBASIC4.73□□□□□ -1.65
CBX4O00257 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC4.73□□□□□ -1.65
CBX4O00257 AL591178.1-201ENST00000439239 454 ntTSL 5 BASIC4.73□□□□□ -1.65
CBX4O00257 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC4.73□□□□□ -1.65
CBX4O00257 AL671855.1-201ENST00000446875 1203 ntBASIC4.73□□□□□ -1.65
CBX4O00257 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC4.73□□□□□ -1.65
CBX4O00257 RPS29P25-201ENST00000481709 171 ntBASIC4.73□□□□□ -1.65
CBX4O00257 RPS3AP50-201ENST00000487064 803 ntBASIC4.73□□□□□ -1.65
CBX4O00257 AC020890.1-201ENST00000491837 504 ntBASIC4.73□□□□□ -1.65
CBX4O00257 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC4.73□□□□□ -1.65
CBX4O00257 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC4.73□□□□□ -1.65
CBX4O00257 RN7SKP122-201ENST00000515923 296 ntBASIC4.73□□□□□ -1.65
CBX4O00257 SNORA40.12-201ENST00000516329 111 ntBASIC4.73□□□□□ -1.65
CBX4O00257 AF235103.2-201ENST00000525753 346 ntBASIC4.73□□□□□ -1.65
CBX4O00257 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
CBX4O00257 AC128657.1-201ENST00000549459 145 ntBASIC4.73□□□□□ -1.65
CBX4O00257 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC4.73□□□□□ -1.65
CBX4O00257 AL020997.2-201ENST00000602607 184 ntBASIC4.73□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 117.5 ms