Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC3.28□□□□□ -1.88
CCDC88BA6NC98 AC009452.1-201ENST00000640823 606 ntBASIC3.28□□□□□ -1.88
CCDC88BA6NC98 ATP8A2P2-201ENST00000437678 1568 ntBASIC3.28□□□□□ -1.88
CCDC88BA6NC98 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC3.28□□□□□ -1.88
CCDC88BA6NC98 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC3.28□□□□□ -1.88
CCDC88BA6NC98 AC011155.1-201ENST00000316512 456 ntBASIC3.28□□□□□ -1.88
CCDC88BA6NC98 CD3D-202ENST00000392884 476 ntTSL 2 BASIC3.28□□□□□ -1.88
CCDC88BA6NC98 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC3.28□□□□□ -1.88
CCDC88BA6NC98 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC3.28□□□□□ -1.88
CCDC88BA6NC98 HMGB3P15-201ENST00000507326 574 ntBASIC3.28□□□□□ -1.88
CCDC88BA6NC98 RNU6-1053P-201ENST00000515930 101 ntBASIC3.28□□□□□ -1.88
CCDC88BA6NC98 OR4U1P-201ENST00000554958 912 ntBASIC3.28□□□□□ -1.88
CCDC88BA6NC98 AP004372.1-201ENST00000604842 844 ntBASIC3.28□□□□□ -1.88
CCDC88BA6NC98 AC010678.1-201ENST00000614118 713 ntBASIC3.28□□□□□ -1.88
CCDC88BA6NC98 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.28□□□□□ -1.88
CCDC88BA6NC98 RBMS3-AS3-202ENST00000635847 738 ntTSL 5 BASIC3.28□□□□□ -1.88
CCDC88BA6NC98 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
CCDC88BA6NC98 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC3.27□□□□□ -1.89
CCDC88BA6NC98 RNU4-62P-201ENST00000410125 130 ntBASIC3.27□□□□□ -1.89
CCDC88BA6NC98 AC010723.1-201ENST00000435111 540 ntTSL 3 BASIC3.27□□□□□ -1.89
CCDC88BA6NC98 IFNWP4-201ENST00000453148 294 ntBASIC3.27□□□□□ -1.89
CCDC88BA6NC98 AC121764.2-201ENST00000469806 587 ntTSL 2 BASIC3.27□□□□□ -1.89
CCDC88BA6NC98 TMEM248P1-201ENST00000510579 951 ntBASIC3.27□□□□□ -1.89
CCDC88BA6NC98 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC3.27□□□□□ -1.89
CCDC88BA6NC98 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC3.27□□□□□ -1.89
CCDC88BA6NC98 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC3.27□□□□□ -1.89
CCDC88BA6NC98 AC068790.3-201ENST00000602988 553 ntBASIC3.27□□□□□ -1.89
CCDC88BA6NC98 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC3.27□□□□□ -1.89
CCDC88BA6NC98 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC3.27□□□□□ -1.89
CCDC88BA6NC98 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
CCDC88BA6NC98 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
CCDC88BA6NC98 RNU2-20P-201ENST00000410425 191 ntBASIC3.26□□□□□ -1.89
CCDC88BA6NC98 RAD23BP2-201ENST00000416003 1207 ntBASIC3.26□□□□□ -1.89
CCDC88BA6NC98 SEC63P1-201ENST00000425785 1258 ntBASIC3.26□□□□□ -1.89
CCDC88BA6NC98 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC3.26□□□□□ -1.89
CCDC88BA6NC98 CR769767.1-201ENST00000436337 346 ntBASIC3.26□□□□□ -1.89
CCDC88BA6NC98 AC090543.1-201ENST00000492168 485 ntBASIC3.26□□□□□ -1.89
CCDC88BA6NC98 AC011352.3-201ENST00000505162 593 ntBASIC3.26□□□□□ -1.89
CCDC88BA6NC98 MIR4303-201ENST00000581299 66 ntBASIC3.26□□□□□ -1.89
CCDC88BA6NC98 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC3.26□□□□□ -1.89
CCDC88BA6NC98 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC3.26□□□□□ -1.89
CCDC88BA6NC98 GMCL1P2-201ENST00000605230 823 ntBASIC3.26□□□□□ -1.89
CCDC88BA6NC98 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC3.26□□□□□ -1.89
CCDC88BA6NC98 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
CCDC88BA6NC98 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
CCDC88BA6NC98 AC007390.1-201ENST00000415722 356 ntBASIC3.25□□□□□ -1.89
CCDC88BA6NC98 AC104332.2-201ENST00000429959 156 ntBASIC3.25□□□□□ -1.89
CCDC88BA6NC98 ELOCP13-201ENST00000443934 329 ntBASIC3.25□□□□□ -1.89
CCDC88BA6NC98 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC3.25□□□□□ -1.89
CCDC88BA6NC98 MTCYBP14-201ENST00000457471 715 ntBASIC3.25□□□□□ -1.89
CCDC88BA6NC98 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
CCDC88BA6NC98 AC025881.1-201ENST00000518851 512 ntBASIC3.25□□□□□ -1.89
CCDC88BA6NC98 COX6CP5-201ENST00000527162 228 ntBASIC3.25□□□□□ -1.89
CCDC88BA6NC98 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC3.25□□□□□ -1.89
CCDC88BA6NC98 AL138828.1-203ENST00000419926 1570 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
CCDC88BA6NC98 AL512283.1-201ENST00000606756 1384 ntBASIC3.25□□□□□ -1.89
CCDC88BA6NC98 ATP6V1G3-201ENST00000281087 630 ntAPPRIS P1 TSL 5 BASIC3.24□□□□□ -1.89
CCDC88BA6NC98 S100G-201ENST00000380200 455 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
CCDC88BA6NC98 MTCYBP31-201ENST00000438855 1122 ntBASIC3.24□□□□□ -1.89
CCDC88BA6NC98 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC3.24□□□□□ -1.89
CCDC88BA6NC98 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC3.24□□□□□ -1.89
CCDC88BA6NC98 RNA5SP309-201ENST00000516670 106 ntBASIC3.24□□□□□ -1.89
CCDC88BA6NC98 AL358333.1-201ENST00000555115 467 ntTSL 3 BASIC3.24□□□□□ -1.89
CCDC88BA6NC98 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.24□□□□□ -1.89
CCDC88BA6NC98 MIR4781-201ENST00000585250 76 ntBASIC3.24□□□□□ -1.89
CCDC88BA6NC98 AL096701.2-201ENST00000416920 238 ntBASIC3.23□□□□□ -1.89
CCDC88BA6NC98 BTF3P4-201ENST00000418852 495 ntBASIC3.23□□□□□ -1.89
CCDC88BA6NC98 RLIMP2-201ENST00000427891 1563 ntBASIC3.23□□□□□ -1.89
CCDC88BA6NC98 LINC01935-201ENST00000431897 437 ntTSL 3 BASIC3.23□□□□□ -1.89
CCDC88BA6NC98 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC3.23□□□□□ -1.89
CCDC88BA6NC98 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC3.23□□□□□ -1.89
CCDC88BA6NC98 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC3.23□□□□□ -1.89
CCDC88BA6NC98 RNU6ATAC12P-201ENST00000516542 115 ntBASIC3.23□□□□□ -1.89
CCDC88BA6NC98 IGHV3-76-201ENST00000522465 295 ntBASIC3.23□□□□□ -1.89
CCDC88BA6NC98 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC3.23□□□□□ -1.89
CCDC88BA6NC98 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC3.23□□□□□ -1.89
CCDC88BA6NC98 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC3.23□□□□□ -1.89
CCDC88BA6NC98 AL356280.1-201ENST00000603614 379 ntBASIC3.23□□□□□ -1.89
CCDC88BA6NC98 VIS1.1-201ENST00000610517 203 ntBASIC3.23□□□□□ -1.89
CCDC88BA6NC98 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC3.23□□□□□ -1.89
CCDC88BA6NC98 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC3.23□□□□□ -1.89
CCDC88BA6NC98 MFSD8-245ENST00000641743 948 ntBASIC3.23□□□□□ -1.89
CCDC88BA6NC98 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
CCDC88BA6NC98 AL355578.1-201ENST00000607405 1328 ntBASIC3.23□□□□□ -1.89
CCDC88BA6NC98 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
CCDC88BA6NC98 RNA5SP338-201ENST00000410495 85 ntBASIC3.22□□□□□ -1.89
CCDC88BA6NC98 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC3.22□□□□□ -1.89
CCDC88BA6NC98 AC104564.1-201ENST00000493028 407 ntBASIC3.22□□□□□ -1.89
CCDC88BA6NC98 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC3.22□□□□□ -1.89
CCDC88BA6NC98 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC3.22□□□□□ -1.89
CCDC88BA6NC98 AC009314.1-201ENST00000603871 304 ntBASIC3.22□□□□□ -1.89
CCDC88BA6NC98 AL589740.1-205ENST00000635561 565 ntTSL 5 BASIC3.22□□□□□ -1.89
CCDC88BA6NC98 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC3.22□□□□□ -1.89
CCDC88BA6NC98 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.22□□□□□ -1.89
CCDC88BA6NC98 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC3.22□□□□□ -1.89
CCDC88BA6NC98 ZNF271P-202ENST00000465539 1970 ntBASIC3.22□□□□□ -1.89
CCDC88BA6NC98 MTND5P23-201ENST00000430812 1655 ntBASIC3.22□□□□□ -1.89
CCDC88BA6NC98 DEFB106A-201ENST00000335186 303 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
CCDC88BA6NC98 MIR378A-201ENST00000362177 66 ntBASIC3.22□□□□□ -1.89
CCDC88BA6NC98 AL021407.1-201ENST00000404531 386 ntBASIC3.22□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 97.2 ms