Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 AC092070.2-201ENST00000597550 545 ntTSL 4 BASIC5.12□□□□□ -1.59
HIF3AQ9Y2N7 HMGB1P50-201ENST00000605814 607 ntBASIC5.12□□□□□ -1.59
HIF3AQ9Y2N7 PHKBP1-201ENST00000450951 1951 ntBASIC5.12□□□□□ -1.59
HIF3AQ9Y2N7 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC5.12□□□□□ -1.59
HIF3AQ9Y2N7 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
HIF3AQ9Y2N7 LEPR-208ENST00000616738 5081 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
HIF3AQ9Y2N7 GHR-209ENST00000612626 4524 ntAPPRIS P1 TSL 5 BASIC5.12□□□□□ -1.59
HIF3AQ9Y2N7 LINC02401-201ENST00000550185 3059 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
HIF3AQ9Y2N7 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
HIF3AQ9Y2N7 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
HIF3AQ9Y2N7 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC5.11□□□□□ -1.59
HIF3AQ9Y2N7 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC5.11□□□□□ -1.59
HIF3AQ9Y2N7 GPATCH11-201ENST00000281932 3570 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
HIF3AQ9Y2N7 CALCOCO2-204ENST00000448105 1916 ntTSL 2 BASIC5.11□□□□□ -1.59
HIF3AQ9Y2N7 MYBPC1-201ENST00000361466 3899 ntAPPRIS P4 TSL 1 (best) BASIC5.11□□□□□ -1.59
HIF3AQ9Y2N7 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC5.11□□□□□ -1.59
HIF3AQ9Y2N7 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
HIF3AQ9Y2N7 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC5.11□□□□□ -1.59
HIF3AQ9Y2N7 FILIP1L-201ENST00000331335 4219 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
HIF3AQ9Y2N7 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
HIF3AQ9Y2N7 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC5.11□□□□□ -1.59
HIF3AQ9Y2N7 AL159987.1-201ENST00000347911 293 ntBASIC5.11□□□□□ -1.59
HIF3AQ9Y2N7 SNORD62.1-201ENST00000362541 86 ntBASIC5.11□□□□□ -1.59
HIF3AQ9Y2N7 RNA5SP477-201ENST00000362639 119 ntBASIC5.11□□□□□ -1.59
HIF3AQ9Y2N7 RNU6-774P-201ENST00000363238 107 ntBASIC5.11□□□□□ -1.59
HIF3AQ9Y2N7 RNU1-65P-201ENST00000363919 148 ntBASIC5.11□□□□□ -1.59
HIF3AQ9Y2N7 SNORD14.1-201ENST00000365609 90 ntBASIC5.11□□□□□ -1.59
HIF3AQ9Y2N7 Y_RNA.376-201ENST00000365638 108 ntBASIC5.11□□□□□ -1.59
HIF3AQ9Y2N7 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC5.11□□□□□ -1.59
HIF3AQ9Y2N7 RNU6-637P-201ENST00000384050 107 ntBASIC5.11□□□□□ -1.59
HIF3AQ9Y2N7 RN7SKP126-201ENST00000411143 300 ntBASIC5.11□□□□□ -1.59
HIF3AQ9Y2N7 AC011933.1-201ENST00000413334 321 ntBASIC5.11□□□□□ -1.59
HIF3AQ9Y2N7 TRAPPC2P10-201ENST00000415662 323 ntBASIC5.11□□□□□ -1.59
HIF3AQ9Y2N7 RPS12P5-201ENST00000423449 371 ntBASIC5.11□□□□□ -1.59
HIF3AQ9Y2N7 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC5.11□□□□□ -1.59
HIF3AQ9Y2N7 RPL21P112-201ENST00000434403 463 ntBASIC5.11□□□□□ -1.59
HIF3AQ9Y2N7 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC5.11□□□□□ -1.59
HIF3AQ9Y2N7 AC092162.2-201ENST00000438143 532 ntTSL 4 BASIC5.11□□□□□ -1.59
HIF3AQ9Y2N7 MTND4LP30-201ENST00000454092 297 ntBASIC5.11□□□□□ -1.59
HIF3AQ9Y2N7 SNORD5.1-201ENST00000458800 75 ntBASIC5.11□□□□□ -1.59
HIF3AQ9Y2N7 RN7SL432P-201ENST00000484057 298 ntBASIC5.11□□□□□ -1.59
HIF3AQ9Y2N7 AC026979.1-201ENST00000492525 396 ntBASIC5.11□□□□□ -1.59
HIF3AQ9Y2N7 AC009120.1-201ENST00000493458 473 ntBASIC5.11□□□□□ -1.59
HIF3AQ9Y2N7 AC092916.1-201ENST00000497896 411 ntTSL 3 BASIC5.11□□□□□ -1.59
HIF3AQ9Y2N7 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC5.11□□□□□ -1.59
HIF3AQ9Y2N7 AC025458.1-201ENST00000506046 166 ntBASIC5.11□□□□□ -1.59
HIF3AQ9Y2N7 AC006499.3-201ENST00000506077 748 ntBASIC5.11□□□□□ -1.59
HIF3AQ9Y2N7 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC5.11□□□□□ -1.59
HIF3AQ9Y2N7 AC025465.3-201ENST00000510570 311 ntBASIC5.11□□□□□ -1.59
HIF3AQ9Y2N7 Y_RNA.667-201ENST00000516212 107 ntBASIC5.11□□□□□ -1.59
HIF3AQ9Y2N7 RNU6-685P-201ENST00000517088 95 ntBASIC5.11□□□□□ -1.59
HIF3AQ9Y2N7 AP000424.2-201ENST00000523784 233 ntTSL 3 BASIC5.11□□□□□ -1.59
HIF3AQ9Y2N7 LINC02366-202ENST00000541949 696 ntTSL 3 BASIC5.11□□□□□ -1.59
HIF3AQ9Y2N7 AL121576.1-201ENST00000556055 276 ntBASIC5.11□□□□□ -1.59
HIF3AQ9Y2N7 AC091231.1-201ENST00000558443 391 ntTSL 5 BASIC5.11□□□□□ -1.59
HIF3AQ9Y2N7 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC5.11□□□□□ -1.59
HIF3AQ9Y2N7 LINC01906-201ENST00000582962 499 ntTSL 4 BASIC5.11□□□□□ -1.59
HIF3AQ9Y2N7 AC008521.1-201ENST00000587471 187 ntBASIC5.11□□□□□ -1.59
HIF3AQ9Y2N7 Z98751.3-201ENST00000604447 521 ntBASIC5.11□□□□□ -1.59
HIF3AQ9Y2N7 AC104695.2-201ENST00000605056 775 ntBASIC5.11□□□□□ -1.59
HIF3AQ9Y2N7 FAM27E4-201ENST00000605259 342 ntBASIC5.11□□□□□ -1.59
HIF3AQ9Y2N7 AL161423.1-201ENST00000613700 262 ntBASIC5.11□□□□□ -1.59
HIF3AQ9Y2N7 RNA5SP439-201ENST00000617595 124 ntBASIC5.11□□□□□ -1.59
HIF3AQ9Y2N7 AL031665.2-201ENST00000620712 209 ntTSL 3 BASIC5.11□□□□□ -1.59
HIF3AQ9Y2N7 AC073592.6-201ENST00000624271 415 ntBASIC5.11□□□□□ -1.59
HIF3AQ9Y2N7 AL355480.1-201ENST00000629041 99 ntBASIC5.11□□□□□ -1.59
HIF3AQ9Y2N7 PDE4D-229ENST00000638939 375 ntTSL 5 BASIC5.11□□□□□ -1.59
HIF3AQ9Y2N7 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC5.11□□□□□ -1.59
HIF3AQ9Y2N7 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
HIF3AQ9Y2N7 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC5.11□□□□□ -1.59
HIF3AQ9Y2N7 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC5.11□□□□□ -1.59
HIF3AQ9Y2N7 PIGK-202ENST00000370812 4596 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
HIF3AQ9Y2N7 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC5.11□□□□□ -1.59
HIF3AQ9Y2N7 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC5.11□□□□□ -1.59
HIF3AQ9Y2N7 YPEL5-202ENST00000379519 2499 ntAPPRIS P1 TSL 2 BASIC5.11□□□□□ -1.59
HIF3AQ9Y2N7 RRM1-201ENST00000300738 3076 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
HIF3AQ9Y2N7 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
HIF3AQ9Y2N7 XIAPP3-201ENST00000312918 795 ntBASIC5.1□□□□□ -1.59
HIF3AQ9Y2N7 RNA5SP326-201ENST00000363209 110 ntBASIC5.1□□□□□ -1.59
HIF3AQ9Y2N7 RNU6-806P-201ENST00000365147 105 ntBASIC5.1□□□□□ -1.59
HIF3AQ9Y2N7 RNA5SP30-201ENST00000365552 115 ntBASIC5.1□□□□□ -1.59
HIF3AQ9Y2N7 SDAD1-203ENST00000395711 2513 ntTSL 2 BASIC5.1□□□□□ -1.59
HIF3AQ9Y2N7 MIR1203-201ENST00000408812 85 ntBASIC5.1□□□□□ -1.59
HIF3AQ9Y2N7 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC5.1□□□□□ -1.59
HIF3AQ9Y2N7 ST7-212ENST00000422922 1887 ntTSL 5 BASIC5.1□□□□□ -1.59
HIF3AQ9Y2N7 AC139712.2-201ENST00000424302 339 ntBASIC5.1□□□□□ -1.59
HIF3AQ9Y2N7 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC5.1□□□□□ -1.59
HIF3AQ9Y2N7 AC004990.1-201ENST00000431722 564 ntTSL 4 BASIC5.1□□□□□ -1.59
HIF3AQ9Y2N7 AL353597.2-202ENST00000434901 373 ntBASIC5.1□□□□□ -1.59
HIF3AQ9Y2N7 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC5.1□□□□□ -1.59
HIF3AQ9Y2N7 AC099799.1-201ENST00000439809 192 ntBASIC5.1□□□□□ -1.59
HIF3AQ9Y2N7 AL590664.1-201ENST00000448065 339 ntBASIC5.1□□□□□ -1.59
HIF3AQ9Y2N7 ZNF347-202ENST00000452676 4553 ntAPPRIS ALT2 TSL 2 BASIC5.1□□□□□ -1.59
HIF3AQ9Y2N7 RPL39P38-201ENST00000467018 153 ntBASIC5.1□□□□□ -1.59
HIF3AQ9Y2N7 AC087884.1-201ENST00000469738 328 ntBASIC5.1□□□□□ -1.59
HIF3AQ9Y2N7 RPL32P33-201ENST00000487023 394 ntBASIC5.1□□□□□ -1.59
HIF3AQ9Y2N7 RN7SL170P-201ENST00000487098 295 ntBASIC5.1□□□□□ -1.59
HIF3AQ9Y2N7 AC021678.3-201ENST00000517893 476 ntBASIC5.1□□□□□ -1.59
HIF3AQ9Y2N7 IGKV2D-23-201ENST00000518179 286 ntBASIC5.1□□□□□ -1.59
HIF3AQ9Y2N7 AC011853.1-201ENST00000518911 454 ntBASIC5.1□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 104.7 ms