Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 AP001541.1-201ENST00000623322 1904 ntBASIC6.18□□□□□ -1.42
LIMD1Q9UGP4 ROR1-AS1-202ENST00000424995 2189 ntTSL 2 BASIC6.18□□□□□ -1.42
LIMD1Q9UGP4 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
LIMD1Q9UGP4 FILIP1L-202ENST00000354552 3970 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
LIMD1Q9UGP4 GPM6A-201ENST00000280187 2854 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
LIMD1Q9UGP4 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC6.18□□□□□ -1.42
LIMD1Q9UGP4 NBPF12-204ENST00000613714 2701 ntTSL 5 BASIC6.18□□□□□ -1.42
LIMD1Q9UGP4 GTDC1-204ENST00000392869 10514 ntAPPRIS P1 TSL 5 BASIC6.18□□□□□ -1.42
LIMD1Q9UGP4 PYHIN1-203ENST00000368140 2083 ntAPPRIS P4 TSL 1 (best) BASIC6.18□□□□□ -1.42
LIMD1Q9UGP4 POT1-202ENST00000393329 3950 ntTSL 5 BASIC6.17□□□□□ -1.42
LIMD1Q9UGP4 CERS3-203ENST00000538112 1856 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
LIMD1Q9UGP4 KCNJ16-202ENST00000392670 4009 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
LIMD1Q9UGP4 RALGAPA2-201ENST00000202677 6152 ntAPPRIS P1 TSL 5 BASIC6.17□□□□□ -1.42
LIMD1Q9UGP4 PCGF5-204ENST00000543648 7144 ntAPPRIS P1 TSL 2 BASIC6.17□□□□□ -1.42
LIMD1Q9UGP4 PSD3-202ENST00000327040 11689 ntAPPRIS ALT2 TSL 1 (best) BASIC6.17□□□□□ -1.42
LIMD1Q9UGP4 RORB-201ENST00000376896 9551 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
LIMD1Q9UGP4 ATP2C1-203ENST00000422190 3386 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
LIMD1Q9UGP4 IRF5P1-201ENST00000504852 2164 ntBASIC6.17□□□□□ -1.42
LIMD1Q9UGP4 CCDC129-211ENST00000615280 4142 ntAPPRIS ALT2 TSL 2 BASIC6.17□□□□□ -1.42
LIMD1Q9UGP4 PRKDC-201ENST00000314191 13509 ntAPPRIS P4 TSL 1 (best) BASIC6.17□□□□□ -1.42
LIMD1Q9UGP4 LINC02183-201ENST00000637822 1732 ntTSL 5 BASIC6.17□□□□□ -1.42
LIMD1Q9UGP4 AC107027.3-201ENST00000565095 3473 ntBASIC6.17□□□□□ -1.42
LIMD1Q9UGP4 CLMN-201ENST00000298912 12747 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
LIMD1Q9UGP4 RGPD1-206ENST00000641458 5271 ntAPPRIS ALT2 BASIC6.17□□□□□ -1.42
LIMD1Q9UGP4 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC6.17□□□□□ -1.42
LIMD1Q9UGP4 RIMS1-205ENST00000414192 1787 ntTSL 2 BASIC6.17□□□□□ -1.42
LIMD1Q9UGP4 Y_RNA.60-201ENST00000362831 98 ntBASIC6.17□□□□□ -1.42
LIMD1Q9UGP4 Y_RNA.222-201ENST00000364264 102 ntBASIC6.17□□□□□ -1.42
LIMD1Q9UGP4 Y_RNA.376-201ENST00000365638 108 ntBASIC6.17□□□□□ -1.42
LIMD1Q9UGP4 Y_RNA.483-201ENST00000384380 101 ntBASIC6.17□□□□□ -1.42
LIMD1Q9UGP4 RNU6-933P-201ENST00000384424 107 ntBASIC6.17□□□□□ -1.42
LIMD1Q9UGP4 AL133388.1-201ENST00000404509 287 ntBASIC6.17□□□□□ -1.42
LIMD1Q9UGP4 RNU2-38P-201ENST00000410856 79 ntBASIC6.17□□□□□ -1.42
LIMD1Q9UGP4 ATP6V1G1P7-201ENST00000415853 349 ntBASIC6.17□□□□□ -1.42
LIMD1Q9UGP4 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC6.17□□□□□ -1.42
LIMD1Q9UGP4 H3F3BP1-201ENST00000440551 403 ntBASIC6.17□□□□□ -1.42
LIMD1Q9UGP4 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC6.17□□□□□ -1.42
LIMD1Q9UGP4 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
LIMD1Q9UGP4 CHEK2P4-201ENST00000450340 246 ntBASIC6.17□□□□□ -1.42
LIMD1Q9UGP4 IGHV5-78-201ENST00000450948 295 ntBASIC6.17□□□□□ -1.42
LIMD1Q9UGP4 RN7SL72P-201ENST00000460697 269 ntBASIC6.17□□□□□ -1.42
LIMD1Q9UGP4 RPS23P6-201ENST00000466136 431 ntBASIC6.17□□□□□ -1.42
LIMD1Q9UGP4 COPS8P2-201ENST00000473228 627 ntBASIC6.17□□□□□ -1.42
LIMD1Q9UGP4 RN7SL727P-201ENST00000482164 296 ntBASIC6.17□□□□□ -1.42
LIMD1Q9UGP4 RN7SL30P-201ENST00000488416 306 ntBASIC6.17□□□□□ -1.42
LIMD1Q9UGP4 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC6.17□□□□□ -1.42
LIMD1Q9UGP4 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC6.17□□□□□ -1.42
LIMD1Q9UGP4 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC6.17□□□□□ -1.42
LIMD1Q9UGP4 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC6.17□□□□□ -1.42
LIMD1Q9UGP4 LRRC37A5P-203ENST00000580181 585 ntBASIC6.17□□□□□ -1.42
LIMD1Q9UGP4 MIR548AC-201ENST00000585049 88 ntBASIC6.17□□□□□ -1.42
LIMD1Q9UGP4 HMGB2P1-201ENST00000591146 634 ntBASIC6.17□□□□□ -1.42
LIMD1Q9UGP4 AC006363.1-201ENST00000603806 463 ntBASIC6.17□□□□□ -1.42
LIMD1Q9UGP4 IMMP1LP3-201ENST00000604197 224 ntBASIC6.17□□□□□ -1.42
LIMD1Q9UGP4 AC024940.4-201ENST00000605507 246 ntBASIC6.17□□□□□ -1.42
LIMD1Q9UGP4 AL109954.2-201ENST00000611020 530 ntTSL 4 BASIC6.17□□□□□ -1.42
LIMD1Q9UGP4 PRO1804-201ENST00000623780 2050 ntBASIC6.17□□□□□ -1.42
LIMD1Q9UGP4 AC011369.2-201ENST00000624423 1567 ntBASIC6.17□□□□□ -1.42
LIMD1Q9UGP4 DPH5-203ENST00000370109 1316 ntAPPRIS P4 TSL 1 (best) BASIC6.17□□□□□ -1.42
LIMD1Q9UGP4 OBSCN-201ENST00000284548 20432 ntTSL 2 BASIC6.17□□□□□ -1.42
LIMD1Q9UGP4 CUZD1-205ENST00000368904 2903 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
LIMD1Q9UGP4 NSF-206ENST00000575068 2667 ntTSL 2 BASIC6.17□□□□□ -1.42
LIMD1Q9UGP4 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
LIMD1Q9UGP4 FTO-204ENST00000463855 3056 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
LIMD1Q9UGP4 MACF1-232ENST00000567887 24319 ntAPPRIS P5 TSL 5 BASIC6.17□□□□□ -1.42
LIMD1Q9UGP4 MSL2-202ENST00000434835 2272 ntTSL 2 BASIC6.16□□□□□ -1.42
LIMD1Q9UGP4 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC6.16□□□□□ -1.42
LIMD1Q9UGP4 OR9Q2-202ENST00000641291 3774 ntAPPRIS P1 BASIC6.16□□□□□ -1.42
LIMD1Q9UGP4 TRIM64-201ENST00000533122 2691 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
LIMD1Q9UGP4 RFX3-212ENST00000617270 9253 ntAPPRIS P1 TSL 2 BASIC6.16□□□□□ -1.42
LIMD1Q9UGP4 HECTD4-211ENST00000550722 15450 ntAPPRIS ALT2 TSL 5 BASIC6.16□□□□□ -1.42
LIMD1Q9UGP4 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
LIMD1Q9UGP4 RNU6-770P-201ENST00000363929 105 ntBASIC6.16□□□□□ -1.42
LIMD1Q9UGP4 RNU6-398P-201ENST00000384143 109 ntBASIC6.16□□□□□ -1.42
LIMD1Q9UGP4 AL109941.1-201ENST00000401925 229 ntBASIC6.16□□□□□ -1.42
LIMD1Q9UGP4 ELOCP20-201ENST00000422460 345 ntBASIC6.16□□□□□ -1.42
LIMD1Q9UGP4 AC139712.2-201ENST00000424302 339 ntBASIC6.16□□□□□ -1.42
LIMD1Q9UGP4 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC6.16□□□□□ -1.42
LIMD1Q9UGP4 AC004990.1-201ENST00000431722 564 ntTSL 4 BASIC6.16□□□□□ -1.42
LIMD1Q9UGP4 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC6.16□□□□□ -1.42
LIMD1Q9UGP4 RPL12P46-201ENST00000436610 195 ntBASIC6.16□□□□□ -1.42
LIMD1Q9UGP4 AL390119.1-201ENST00000440329 312 ntBASIC6.16□□□□□ -1.42
LIMD1Q9UGP4 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC6.16□□□□□ -1.42
LIMD1Q9UGP4 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
LIMD1Q9UGP4 AC009120.1-201ENST00000493458 473 ntBASIC6.16□□□□□ -1.42
LIMD1Q9UGP4 AC008953.1-201ENST00000497334 318 ntBASIC6.16□□□□□ -1.42
LIMD1Q9UGP4 RNU6-615P-201ENST00000516065 106 ntBASIC6.16□□□□□ -1.42
LIMD1Q9UGP4 RNU6-914P-201ENST00000516749 109 ntBASIC6.16□□□□□ -1.42
LIMD1Q9UGP4 RN7SKP234-201ENST00000517173 224 ntBASIC6.16□□□□□ -1.42
LIMD1Q9UGP4 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC6.16□□□□□ -1.42
LIMD1Q9UGP4 IGLV3-30-201ENST00000524362 298 ntBASIC6.16□□□□□ -1.42
LIMD1Q9UGP4 IGBP1P1-201ENST00000554337 1009 ntBASIC6.16□□□□□ -1.42
LIMD1Q9UGP4 RN7SL652P-201ENST00000577769 300 ntBASIC6.16□□□□□ -1.42
LIMD1Q9UGP4 AC068790.4-201ENST00000602474 263 ntBASIC6.16□□□□□ -1.42
LIMD1Q9UGP4 SNORD91B-202ENST00000608459 222 ntBASIC6.16□□□□□ -1.42
LIMD1Q9UGP4 AC096772.1-201ENST00000609146 564 ntBASIC6.16□□□□□ -1.42
LIMD1Q9UGP4 BEND2-201ENST00000380030 1938 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
LIMD1Q9UGP4 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
LIMD1Q9UGP4 NDST4-204ENST00000613194 3439 ntTSL 5 BASIC6.16□□□□□ -1.42
LIMD1Q9UGP4 ZNF402P-201ENST00000404435 3100 ntBASIC6.16□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 123.1 ms