Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 RPL26P30-202ENST00000602923 645 ntBASIC5.56□□□□□ -1.52
CCDC39Q9UFE4 AC104785.1-201ENST00000603220 588 ntBASIC5.56□□□□□ -1.52
CCDC39Q9UFE4 AL627230.1-201ENST00000613077 211 ntBASIC5.56□□□□□ -1.52
CCDC39Q9UFE4 MIR7973-1-201ENST00000614683 76 ntBASIC5.56□□□□□ -1.52
CCDC39Q9UFE4 AL591926.8-201ENST00000616876 211 ntBASIC5.56□□□□□ -1.52
CCDC39Q9UFE4 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC5.56□□□□□ -1.52
CCDC39Q9UFE4 AP001005.3-201ENST00000622049 129 ntBASIC5.56□□□□□ -1.52
CCDC39Q9UFE4 OR2L1P-202ENST00000641567 1023 ntBASIC5.56□□□□□ -1.52
CCDC39Q9UFE4 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
CCDC39Q9UFE4 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC5.56□□□□□ -1.52
CCDC39Q9UFE4 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC5.56□□□□□ -1.52
CCDC39Q9UFE4 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC5.56□□□□□ -1.52
CCDC39Q9UFE4 MTND5P27-201ENST00000428871 1720 ntBASIC5.56□□□□□ -1.52
CCDC39Q9UFE4 IRF5P1-201ENST00000504852 2164 ntBASIC5.56□□□□□ -1.52
CCDC39Q9UFE4 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC39Q9UFE4 AC009643.2-201ENST00000603543 1448 ntBASIC5.56□□□□□ -1.52
CCDC39Q9UFE4 AC006020.1-201ENST00000420179 1854 ntBASIC5.56□□□□□ -1.52
CCDC39Q9UFE4 LDHAL6CP-202ENST00000550738 3224 ntBASIC5.55□□□□□ -1.52
CCDC39Q9UFE4 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC5.55□□□□□ -1.52
CCDC39Q9UFE4 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC5.55□□□□□ -1.52
CCDC39Q9UFE4 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC39Q9UFE4 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
CCDC39Q9UFE4 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC39Q9UFE4 SNRPEP3-201ENST00000338402 276 ntBASIC5.55□□□□□ -1.52
CCDC39Q9UFE4 U8.4-201ENST00000363626 134 ntBASIC5.55□□□□□ -1.52
CCDC39Q9UFE4 Y_RNA.176-201ENST00000363815 109 ntBASIC5.55□□□□□ -1.52
CCDC39Q9UFE4 RNU6-317P-201ENST00000384031 107 ntBASIC5.55□□□□□ -1.52
CCDC39Q9UFE4 AL121972.1-201ENST00000402023 252 ntBASIC5.55□□□□□ -1.52
CCDC39Q9UFE4 RPL7P25-201ENST00000404151 721 ntBASIC5.55□□□□□ -1.52
CCDC39Q9UFE4 GNG12-AS1-202ENST00000414904 796 ntTSL 3 BASIC5.55□□□□□ -1.52
CCDC39Q9UFE4 GJA6P-201ENST00000415117 1042 ntBASIC5.55□□□□□ -1.52
CCDC39Q9UFE4 AL807761.1-201ENST00000417622 171 ntBASIC5.55□□□□□ -1.52
CCDC39Q9UFE4 AF186996.5-201ENST00000418098 904 ntBASIC5.55□□□□□ -1.52
CCDC39Q9UFE4 EIF4EP1-201ENST00000422311 642 ntBASIC5.55□□□□□ -1.52
CCDC39Q9UFE4 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC5.55□□□□□ -1.52
CCDC39Q9UFE4 RPS24P8-201ENST00000431490 402 ntBASIC5.55□□□□□ -1.52
CCDC39Q9UFE4 SNRPEP7-201ENST00000438350 220 ntBASIC5.55□□□□□ -1.52
CCDC39Q9UFE4 UBE2V1P5-201ENST00000440070 405 ntBASIC5.55□□□□□ -1.52
CCDC39Q9UFE4 TDGF1P1-201ENST00000445734 527 ntBASIC5.55□□□□□ -1.52
CCDC39Q9UFE4 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC5.55□□□□□ -1.52
CCDC39Q9UFE4 RNU6-1218P-201ENST00000458990 108 ntBASIC5.55□□□□□ -1.52
CCDC39Q9UFE4 RPS4XP10-201ENST00000465034 731 ntBASIC5.55□□□□□ -1.52
CCDC39Q9UFE4 RN7SL97P-201ENST00000486780 299 ntBASIC5.55□□□□□ -1.52
CCDC39Q9UFE4 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC5.55□□□□□ -1.52
CCDC39Q9UFE4 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC39Q9UFE4 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC39Q9UFE4 APOOP3-201ENST00000536787 586 ntBASIC5.55□□□□□ -1.52
CCDC39Q9UFE4 AL389895.1-201ENST00000554127 252 ntBASIC5.55□□□□□ -1.52
CCDC39Q9UFE4 AL583810.3-201ENST00000555713 584 ntTSL 4 BASIC5.55□□□□□ -1.52
CCDC39Q9UFE4 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC5.55□□□□□ -1.52
CCDC39Q9UFE4 AC007599.2-201ENST00000573040 493 ntTSL 5 BASIC5.55□□□□□ -1.52
CCDC39Q9UFE4 MIR3691-201ENST00000578066 90 ntBASIC5.55□□□□□ -1.52
CCDC39Q9UFE4 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC5.55□□□□□ -1.52
CCDC39Q9UFE4 AC073539.2-201ENST00000597113 165 ntBASIC5.55□□□□□ -1.52
CCDC39Q9UFE4 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC5.55□□□□□ -1.52
CCDC39Q9UFE4 5S_rRNA.16-201ENST00000612928 119 ntBASIC5.55□□□□□ -1.52
CCDC39Q9UFE4 EIF3FP1-201ENST00000613970 806 ntBASIC5.55□□□□□ -1.52
CCDC39Q9UFE4 AC009237.17-201ENST00000618111 748 ntBASIC5.55□□□□□ -1.52
CCDC39Q9UFE4 AL353662.3-201ENST00000625131 237 ntBASIC5.55□□□□□ -1.52
CCDC39Q9UFE4 AC026634.1-201ENST00000634369 198 ntBASIC5.55□□□□□ -1.52
CCDC39Q9UFE4 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC39Q9UFE4 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC39Q9UFE4 C8orf4-201ENST00000315792 1854 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
CCDC39Q9UFE4 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC5.55□□□□□ -1.52
CCDC39Q9UFE4 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC39Q9UFE4 EOGT-210ENST00000615922 1931 ntBASIC5.54□□□□□ -1.52
CCDC39Q9UFE4 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
CCDC39Q9UFE4 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
CCDC39Q9UFE4 Y_RNA.135-201ENST00000363439 95 ntBASIC5.54□□□□□ -1.52
CCDC39Q9UFE4 RNU5E-8P-201ENST00000363502 116 ntBASIC5.54□□□□□ -1.52
CCDC39Q9UFE4 Y_RNA.307-201ENST00000365022 117 ntBASIC5.54□□□□□ -1.52
CCDC39Q9UFE4 MDM4-202ENST00000367180 547 ntTSL 3 BASIC5.54□□□□□ -1.52
CCDC39Q9UFE4 MIR506-201ENST00000384998 124 ntBASIC5.54□□□□□ -1.52
CCDC39Q9UFE4 U3.35-201ENST00000408405 208 ntBASIC5.54□□□□□ -1.52
CCDC39Q9UFE4 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC5.54□□□□□ -1.52
CCDC39Q9UFE4 RPL6P29-201ENST00000414863 865 ntBASIC5.54□□□□□ -1.52
CCDC39Q9UFE4 AL160004.2-201ENST00000432935 350 ntBASIC5.54□□□□□ -1.52
CCDC39Q9UFE4 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC5.54□□□□□ -1.52
CCDC39Q9UFE4 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC5.54□□□□□ -1.52
CCDC39Q9UFE4 RNU7-63P-201ENST00000459054 62 ntBASIC5.54□□□□□ -1.52
CCDC39Q9UFE4 AC005532.2-201ENST00000467154 373 ntBASIC5.54□□□□□ -1.52
CCDC39Q9UFE4 RN7SL41P-201ENST00000476144 297 ntBASIC5.54□□□□□ -1.52
CCDC39Q9UFE4 RN7SL809P-201ENST00000482040 297 ntBASIC5.54□□□□□ -1.52
CCDC39Q9UFE4 RN7SL558P-201ENST00000497468 299 ntBASIC5.54□□□□□ -1.52
CCDC39Q9UFE4 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC5.54□□□□□ -1.52
CCDC39Q9UFE4 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC5.54□□□□□ -1.52
CCDC39Q9UFE4 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC5.54□□□□□ -1.52
CCDC39Q9UFE4 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC5.54□□□□□ -1.52
CCDC39Q9UFE4 AC022616.6-201ENST00000520479 119 ntBASIC5.54□□□□□ -1.52
CCDC39Q9UFE4 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC5.54□□□□□ -1.52
CCDC39Q9UFE4 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC5.54□□□□□ -1.52
CCDC39Q9UFE4 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC5.54□□□□□ -1.52
CCDC39Q9UFE4 MIR4691-201ENST00000583764 85 ntBASIC5.54□□□□□ -1.52
CCDC39Q9UFE4 AC114684.1-201ENST00000587659 352 ntTSL 3 BASIC5.54□□□□□ -1.52
CCDC39Q9UFE4 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC5.54□□□□□ -1.52
CCDC39Q9UFE4 AC245389.1-201ENST00000605141 529 ntBASIC5.54□□□□□ -1.52
CCDC39Q9UFE4 AL008729.2-201ENST00000606393 473 ntBASIC5.54□□□□□ -1.52
CCDC39Q9UFE4 AC243773.3-201ENST00000613270 256 ntBASIC5.54□□□□□ -1.52
CCDC39Q9UFE4 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC5.54□□□□□ -1.52
CCDC39Q9UFE4 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 109.8 ms