Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
VSX1Q9NZR4 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC4.2□□□□□ -1.74
VSX1Q9NZR4 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC4.2□□□□□ -1.74
VSX1Q9NZR4 PMCHL2-203ENST00000457791 237 ntBASIC4.2□□□□□ -1.74
VSX1Q9NZR4 AL049714.1-201ENST00000466686 347 ntBASIC4.2□□□□□ -1.74
VSX1Q9NZR4 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC4.2□□□□□ -1.74
VSX1Q9NZR4 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC4.2□□□□□ -1.74
VSX1Q9NZR4 PTPN20-213ENST00000502705 854 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
VSX1Q9NZR4 SCARNA22-201ENST00000503991 125 ntBASIC4.2□□□□□ -1.74
VSX1Q9NZR4 AC091868.1-201ENST00000508746 304 ntBASIC4.2□□□□□ -1.74
VSX1Q9NZR4 AC114786.4-201ENST00000508771 728 ntBASIC4.2□□□□□ -1.74
VSX1Q9NZR4 AC105417.1-201ENST00000514691 285 ntBASIC4.2□□□□□ -1.74
VSX1Q9NZR4 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC4.2□□□□□ -1.74
VSX1Q9NZR4 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC4.2□□□□□ -1.74
VSX1Q9NZR4 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC4.2□□□□□ -1.74
VSX1Q9NZR4 HMGN2P6-201ENST00000551091 273 ntBASIC4.2□□□□□ -1.74
VSX1Q9NZR4 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC4.2□□□□□ -1.74
VSX1Q9NZR4 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC4.2□□□□□ -1.74
VSX1Q9NZR4 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC4.2□□□□□ -1.74
VSX1Q9NZR4 AC011487.3-201ENST00000593607 453 ntBASIC4.2□□□□□ -1.74
VSX1Q9NZR4 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC4.2□□□□□ -1.74
VSX1Q9NZR4 YWHAQP7-201ENST00000603536 658 ntBASIC4.2□□□□□ -1.74
VSX1Q9NZR4 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC4.2□□□□□ -1.74
VSX1Q9NZR4 AC113194.1-201ENST00000606037 500 ntBASIC4.2□□□□□ -1.74
VSX1Q9NZR4 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC4.2□□□□□ -1.74
VSX1Q9NZR4 AC007038.2-201ENST00000608095 740 ntBASIC4.2□□□□□ -1.74
VSX1Q9NZR4 AC004825.2-201ENST00000616634 455 ntBASIC4.2□□□□□ -1.74
VSX1Q9NZR4 AL603758.1-201ENST00000618654 241 ntBASIC4.2□□□□□ -1.74
VSX1Q9NZR4 AL356585.4-201ENST00000623078 1229 ntBASIC4.2□□□□□ -1.74
VSX1Q9NZR4 AC091925.2-201ENST00000625059 256 ntBASIC4.2□□□□□ -1.74
VSX1Q9NZR4 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC4.2□□□□□ -1.74
VSX1Q9NZR4 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC4.2□□□□□ -1.74
VSX1Q9NZR4 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
VSX1Q9NZR4 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
VSX1Q9NZR4 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC4.2□□□□□ -1.74
VSX1Q9NZR4 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC4.2□□□□□ -1.74
VSX1Q9NZR4 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
VSX1Q9NZR4 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
VSX1Q9NZR4 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
VSX1Q9NZR4 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC4.2□□□□□ -1.74
VSX1Q9NZR4 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC4.19□□□□□ -1.74
VSX1Q9NZR4 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
VSX1Q9NZR4 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC4.19□□□□□ -1.74
VSX1Q9NZR4 AL359893.1-201ENST00000447628 1580 ntBASIC4.19□□□□□ -1.74
VSX1Q9NZR4 AC026951.1-201ENST00000559530 2459 ntBASIC4.19□□□□□ -1.74
VSX1Q9NZR4 SAMMSON-226ENST00000642089 1582 ntBASIC4.19□□□□□ -1.74
VSX1Q9NZR4 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
VSX1Q9NZR4 AL139811.1-201ENST00000424779 2299 ntBASIC4.19□□□□□ -1.74
VSX1Q9NZR4 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC4.19□□□□□ -1.74
VSX1Q9NZR4 AC011266.1-201ENST00000624119 3569 ntBASIC4.19□□□□□ -1.74
VSX1Q9NZR4 RNU6-223P-201ENST00000362830 107 ntBASIC4.19□□□□□ -1.74
VSX1Q9NZR4 RNA5SP123-201ENST00000363244 119 ntBASIC4.19□□□□□ -1.74
VSX1Q9NZR4 RNA5SP507-201ENST00000363603 121 ntBASIC4.19□□□□□ -1.74
VSX1Q9NZR4 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
VSX1Q9NZR4 SNORA69-201ENST00000383895 132 ntBASIC4.19□□□□□ -1.74
VSX1Q9NZR4 MIR19A-201ENST00000384878 82 ntBASIC4.19□□□□□ -1.74
VSX1Q9NZR4 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
VSX1Q9NZR4 RNU4-34P-201ENST00000410431 124 ntBASIC4.19□□□□□ -1.74
VSX1Q9NZR4 RSU1P3-201ENST00000412878 835 ntBASIC4.19□□□□□ -1.74
VSX1Q9NZR4 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC4.19□□□□□ -1.74
VSX1Q9NZR4 AC009237.10-201ENST00000414112 510 ntBASIC4.19□□□□□ -1.74
VSX1Q9NZR4 RPL23AP27-201ENST00000415161 451 ntBASIC4.19□□□□□ -1.74
VSX1Q9NZR4 RBM6-203ENST00000421682 684 ntTSL 2 BASIC4.19□□□□□ -1.74
VSX1Q9NZR4 OR2AM1P-201ENST00000422137 422 ntBASIC4.19□□□□□ -1.74
VSX1Q9NZR4 Z74021.1-201ENST00000423610 407 ntBASIC4.19□□□□□ -1.74
VSX1Q9NZR4 RPL23AP38-201ENST00000423801 469 ntBASIC4.19□□□□□ -1.74
VSX1Q9NZR4 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC4.19□□□□□ -1.74
VSX1Q9NZR4 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC4.19□□□□□ -1.74
VSX1Q9NZR4 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC4.19□□□□□ -1.74
VSX1Q9NZR4 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
VSX1Q9NZR4 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC4.19□□□□□ -1.74
VSX1Q9NZR4 AC093019.1-201ENST00000443135 252 ntBASIC4.19□□□□□ -1.74
VSX1Q9NZR4 IGKV2-30-201ENST00000468494 390 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
VSX1Q9NZR4 LINC01206-203ENST00000476815 482 ntTSL 3 BASIC4.19□□□□□ -1.74
VSX1Q9NZR4 AC093270.2-201ENST00000486157 792 ntBASIC4.19□□□□□ -1.74
VSX1Q9NZR4 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC4.19□□□□□ -1.74
VSX1Q9NZR4 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
VSX1Q9NZR4 HMGN1P12-201ENST00000499125 195 ntBASIC4.19□□□□□ -1.74
VSX1Q9NZR4 AC139783.2-201ENST00000504847 1145 ntBASIC4.19□□□□□ -1.74
VSX1Q9NZR4 MTCO3P44-201ENST00000510977 541 ntBASIC4.19□□□□□ -1.74
VSX1Q9NZR4 BTF3P13-201ENST00000513224 490 ntBASIC4.19□□□□□ -1.74
VSX1Q9NZR4 RNU6-507P-201ENST00000516045 100 ntBASIC4.19□□□□□ -1.74
VSX1Q9NZR4 IGLV2-28-201ENST00000520681 304 ntBASIC4.19□□□□□ -1.74
VSX1Q9NZR4 AP003385.6-201ENST00000531603 374 ntBASIC4.19□□□□□ -1.74
VSX1Q9NZR4 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC4.19□□□□□ -1.74
VSX1Q9NZR4 HIF1AP1-201ENST00000553642 175 ntBASIC4.19□□□□□ -1.74
VSX1Q9NZR4 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC4.19□□□□□ -1.74
VSX1Q9NZR4 AL110505.1-201ENST00000557062 522 ntTSL 3 BASIC4.19□□□□□ -1.74
VSX1Q9NZR4 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC4.19□□□□□ -1.74
VSX1Q9NZR4 AC209154.1-201ENST00000582156 337 ntBASIC4.19□□□□□ -1.74
VSX1Q9NZR4 OR7E18P-201ENST00000592589 702 ntBASIC4.19□□□□□ -1.74
VSX1Q9NZR4 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC4.19□□□□□ -1.74
VSX1Q9NZR4 AL391813.2-201ENST00000609113 322 ntBASIC4.19□□□□□ -1.74
VSX1Q9NZR4 AC090510.2-201ENST00000617465 629 ntBASIC4.19□□□□□ -1.74
VSX1Q9NZR4 AC140113.4-201ENST00000622087 222 ntBASIC4.19□□□□□ -1.74
VSX1Q9NZR4 FRG1KP-201ENST00000623592 341 ntBASIC4.19□□□□□ -1.74
VSX1Q9NZR4 AP003400.5-201ENST00000624827 617 ntBASIC4.19□□□□□ -1.74
VSX1Q9NZR4 AC087632.1-216ENST00000625619 487 ntAPPRIS P1 TSL 3 BASIC4.19□□□□□ -1.74
VSX1Q9NZR4 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC4.19□□□□□ -1.74
VSX1Q9NZR4 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 112.9 ms