Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 MTCO2P19-201ENST00000427513 598 ntBASIC4.5□□□□□ -1.69
TDP1Q9NUW8 LAMTOR3P1-201ENST00000428620 370 ntBASIC4.5□□□□□ -1.69
TDP1Q9NUW8 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC4.5□□□□□ -1.69
TDP1Q9NUW8 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC4.5□□□□□ -1.69
TDP1Q9NUW8 USP9YP15-201ENST00000442391 422 ntBASIC4.5□□□□□ -1.69
TDP1Q9NUW8 HSFY6P-201ENST00000445573 403 ntBASIC4.5□□□□□ -1.69
TDP1Q9NUW8 AL136380.1-201ENST00000447970 162 ntBASIC4.5□□□□□ -1.69
TDP1Q9NUW8 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC4.5□□□□□ -1.69
TDP1Q9NUW8 AL591473.1-201ENST00000464297 313 ntBASIC4.5□□□□□ -1.69
TDP1Q9NUW8 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC4.5□□□□□ -1.69
TDP1Q9NUW8 AL139099.1-201ENST00000497398 403 ntBASIC4.5□□□□□ -1.69
TDP1Q9NUW8 FAM92A1P2-202ENST00000504766 877 ntBASIC4.5□□□□□ -1.69
TDP1Q9NUW8 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC4.5□□□□□ -1.69
TDP1Q9NUW8 OR5AQ1P-201ENST00000527596 927 ntBASIC4.5□□□□□ -1.69
TDP1Q9NUW8 STX3-204ENST00000530221 534 ntTSL 5 BASIC4.5□□□□□ -1.69
TDP1Q9NUW8 AK6P1-201ENST00000540219 478 ntBASIC4.5□□□□□ -1.69
TDP1Q9NUW8 SETP7-201ENST00000552169 453 ntBASIC4.5□□□□□ -1.69
TDP1Q9NUW8 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC4.5□□□□□ -1.69
TDP1Q9NUW8 MIR3146-201ENST00000580367 79 ntBASIC4.5□□□□□ -1.69
TDP1Q9NUW8 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC4.5□□□□□ -1.69
TDP1Q9NUW8 AL669831.4-202ENST00000590817 238 ntBASIC4.5□□□□□ -1.69
TDP1Q9NUW8 AL391646.1-201ENST00000603860 190 ntBASIC4.5□□□□□ -1.69
TDP1Q9NUW8 MIR8069-1-201ENST00000616627 86 ntBASIC4.5□□□□□ -1.69
TDP1Q9NUW8 AC022106.2-201ENST00000620114 757 ntBASIC4.5□□□□□ -1.69
TDP1Q9NUW8 MIR8069-2-201ENST00000621412 86 ntBASIC4.5□□□□□ -1.69
TDP1Q9NUW8 CR381572.1-201ENST00000625098 102 ntBASIC4.5□□□□□ -1.69
TDP1Q9NUW8 AL159972.1-201ENST00000625150 448 ntBASIC4.5□□□□□ -1.69
TDP1Q9NUW8 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC4.5□□□□□ -1.69
TDP1Q9NUW8 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC4.5□□□□□ -1.69
TDP1Q9NUW8 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
TDP1Q9NUW8 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
TDP1Q9NUW8 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC4.5□□□□□ -1.69
TDP1Q9NUW8 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
TDP1Q9NUW8 LINC01355-201ENST00000566551 5444 ntBASIC4.5□□□□□ -1.69
TDP1Q9NUW8 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
TDP1Q9NUW8 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
TDP1Q9NUW8 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC4.5□□□□□ -1.69
TDP1Q9NUW8 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
TDP1Q9NUW8 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
TDP1Q9NUW8 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC4.49□□□□□ -1.69
TDP1Q9NUW8 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
TDP1Q9NUW8 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC4.49□□□□□ -1.69
TDP1Q9NUW8 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
TDP1Q9NUW8 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
TDP1Q9NUW8 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
TDP1Q9NUW8 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
TDP1Q9NUW8 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
TDP1Q9NUW8 SPRR2C-201ENST00000290702 219 ntBASIC4.49□□□□□ -1.69
TDP1Q9NUW8 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC4.49□□□□□ -1.69
TDP1Q9NUW8 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
TDP1Q9NUW8 RNY3P14-201ENST00000384309 102 ntBASIC4.49□□□□□ -1.69
TDP1Q9NUW8 SNORA37-201ENST00000384504 129 ntBASIC4.49□□□□□ -1.69
TDP1Q9NUW8 RNU6-821P-201ENST00000390995 107 ntBASIC4.49□□□□□ -1.69
TDP1Q9NUW8 AL583835.1-201ENST00000399570 407 ntBASIC4.49□□□□□ -1.69
TDP1Q9NUW8 MTCYBP24-201ENST00000420387 1106 ntBASIC4.49□□□□□ -1.69
TDP1Q9NUW8 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC4.49□□□□□ -1.69
TDP1Q9NUW8 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC4.49□□□□□ -1.69
TDP1Q9NUW8 BTF3P10-201ENST00000433415 495 ntBASIC4.49□□□□□ -1.69
TDP1Q9NUW8 AC119618.1-201ENST00000434191 222 ntBASIC4.49□□□□□ -1.69
TDP1Q9NUW8 FTH1P1-201ENST00000437933 532 ntBASIC4.49□□□□□ -1.69
TDP1Q9NUW8 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC4.49□□□□□ -1.69
TDP1Q9NUW8 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
TDP1Q9NUW8 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
TDP1Q9NUW8 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC4.49□□□□□ -1.69
TDP1Q9NUW8 RPL35AP15-201ENST00000468042 339 ntBASIC4.49□□□□□ -1.69
TDP1Q9NUW8 HMGB1P25-201ENST00000468402 607 ntBASIC4.49□□□□□ -1.69
TDP1Q9NUW8 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC4.49□□□□□ -1.69
TDP1Q9NUW8 AL592156.1-201ENST00000508758 304 ntBASIC4.49□□□□□ -1.69
TDP1Q9NUW8 TMEM248P1-201ENST00000510579 951 ntBASIC4.49□□□□□ -1.69
TDP1Q9NUW8 AC017037.2-201ENST00000513850 890 ntBASIC4.49□□□□□ -1.69
TDP1Q9NUW8 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC4.49□□□□□ -1.69
TDP1Q9NUW8 AP003385.6-201ENST00000531603 374 ntBASIC4.49□□□□□ -1.69
TDP1Q9NUW8 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC4.49□□□□□ -1.69
TDP1Q9NUW8 OR8R1P-201ENST00000543943 764 ntBASIC4.49□□□□□ -1.69
TDP1Q9NUW8 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC4.49□□□□□ -1.69
TDP1Q9NUW8 HMGB1P33-201ENST00000563485 527 ntBASIC4.49□□□□□ -1.69
TDP1Q9NUW8 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC4.49□□□□□ -1.69
TDP1Q9NUW8 MIR3167-201ENST00000579623 85 ntBASIC4.49□□□□□ -1.69
TDP1Q9NUW8 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC4.49□□□□□ -1.69
TDP1Q9NUW8 AC006504.3-201ENST00000586818 523 ntBASIC4.49□□□□□ -1.69
TDP1Q9NUW8 AC093227.2-201ENST00000589357 285 ntBASIC4.49□□□□□ -1.69
TDP1Q9NUW8 AL161729.3-201ENST00000603533 673 ntBASIC4.49□□□□□ -1.69
TDP1Q9NUW8 AL354984.3-201ENST00000604803 325 ntBASIC4.49□□□□□ -1.69
TDP1Q9NUW8 AC105429.2-201ENST00000610567 517 ntBASIC4.49□□□□□ -1.69
TDP1Q9NUW8 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC4.49□□□□□ -1.69
TDP1Q9NUW8 AC002550.2-201ENST00000621246 394 ntBASIC4.49□□□□□ -1.69
TDP1Q9NUW8 AC112204.3-201ENST00000623822 332 ntBASIC4.49□□□□□ -1.69
TDP1Q9NUW8 BMS1P21-201ENST00000634565 365 ntBASIC4.49□□□□□ -1.69
TDP1Q9NUW8 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC4.49□□□□□ -1.69
TDP1Q9NUW8 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC4.49□□□□□ -1.69
TDP1Q9NUW8 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
TDP1Q9NUW8 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC4.49□□□□□ -1.69
TDP1Q9NUW8 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
TDP1Q9NUW8 AL049555.1-201ENST00000562834 1933 ntBASIC4.48□□□□□ -1.69
TDP1Q9NUW8 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC4.48□□□□□ -1.69
TDP1Q9NUW8 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
TDP1Q9NUW8 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC4.48□□□□□ -1.69
TDP1Q9NUW8 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
TDP1Q9NUW8 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
TDP1Q9NUW8 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 127.2 ms