Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 BMS1P21-201ENST00000634565 365 ntBASIC4.17□□□□□ -1.74
PAAF1Q9BRP4 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC4.17□□□□□ -1.74
PAAF1Q9BRP4 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC4.17□□□□□ -1.74
PAAF1Q9BRP4 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC4.17□□□□□ -1.74
PAAF1Q9BRP4 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC4.17□□□□□ -1.74
PAAF1Q9BRP4 NMD3P1-201ENST00000439704 1488 ntBASIC4.17□□□□□ -1.74
PAAF1Q9BRP4 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC4.17□□□□□ -1.74
PAAF1Q9BRP4 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
PAAF1Q9BRP4 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
PAAF1Q9BRP4 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC4.16□□□□□ -1.74
PAAF1Q9BRP4 CCT4P2-201ENST00000233836 1548 ntBASIC4.16□□□□□ -1.74
PAAF1Q9BRP4 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
PAAF1Q9BRP4 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC4.16□□□□□ -1.74
PAAF1Q9BRP4 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC4.16□□□□□ -1.74
PAAF1Q9BRP4 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
PAAF1Q9BRP4 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC4.16□□□□□ -1.74
PAAF1Q9BRP4 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
PAAF1Q9BRP4 Y_RNA.234-201ENST00000364409 97 ntBASIC4.16□□□□□ -1.74
PAAF1Q9BRP4 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
PAAF1Q9BRP4 Y_RNA.505-201ENST00000384489 102 ntBASIC4.16□□□□□ -1.74
PAAF1Q9BRP4 RNU6-821P-201ENST00000390995 107 ntBASIC4.16□□□□□ -1.74
PAAF1Q9BRP4 MIR1251-201ENST00000408552 70 ntBASIC4.16□□□□□ -1.74
PAAF1Q9BRP4 RPL7AP73-201ENST00000413490 353 ntBASIC4.16□□□□□ -1.74
PAAF1Q9BRP4 AC093578.1-201ENST00000415219 368 ntBASIC4.16□□□□□ -1.74
PAAF1Q9BRP4 RPS12P23-201ENST00000419579 400 ntBASIC4.16□□□□□ -1.74
PAAF1Q9BRP4 AC069157.1-201ENST00000421749 137 ntBASIC4.16□□□□□ -1.74
PAAF1Q9BRP4 AL391219.1-201ENST00000422570 483 ntBASIC4.16□□□□□ -1.74
PAAF1Q9BRP4 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC4.16□□□□□ -1.74
PAAF1Q9BRP4 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC4.16□□□□□ -1.74
PAAF1Q9BRP4 RPS24P1-201ENST00000438550 371 ntBASIC4.16□□□□□ -1.74
PAAF1Q9BRP4 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC4.16□□□□□ -1.74
PAAF1Q9BRP4 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC4.16□□□□□ -1.74
PAAF1Q9BRP4 SNORD42A-201ENST00000459584 64 ntBASIC4.16□□□□□ -1.74
PAAF1Q9BRP4 AC146507.1-201ENST00000468335 354 ntBASIC4.16□□□□□ -1.74
PAAF1Q9BRP4 ST13P14-201ENST00000474095 734 ntBASIC4.16□□□□□ -1.74
PAAF1Q9BRP4 RN7SL271P-201ENST00000487601 295 ntBASIC4.16□□□□□ -1.74
PAAF1Q9BRP4 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC4.16□□□□□ -1.74
PAAF1Q9BRP4 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC4.16□□□□□ -1.74
PAAF1Q9BRP4 AC022695.1-201ENST00000522089 237 ntBASIC4.16□□□□□ -1.74
PAAF1Q9BRP4 OR5M7P-201ENST00000526140 972 ntBASIC4.16□□□□□ -1.74
PAAF1Q9BRP4 AL669831.4-202ENST00000590817 238 ntBASIC4.16□□□□□ -1.74
PAAF1Q9BRP4 AC015871.2-201ENST00000603605 948 ntBASIC4.16□□□□□ -1.74
PAAF1Q9BRP4 Z99129.1-201ENST00000612510 255 ntBASIC4.16□□□□□ -1.74
PAAF1Q9BRP4 AL603839.4-201ENST00000624658 1005 ntBASIC4.16□□□□□ -1.74
PAAF1Q9BRP4 AC092447.7-201ENST00000422212 1621 ntBASIC4.16□□□□□ -1.74
PAAF1Q9BRP4 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC4.16□□□□□ -1.74
PAAF1Q9BRP4 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
PAAF1Q9BRP4 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC4.16□□□□□ -1.74
PAAF1Q9BRP4 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC4.16□□□□□ -1.74
PAAF1Q9BRP4 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC4.16□□□□□ -1.74
PAAF1Q9BRP4 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
PAAF1Q9BRP4 MTND4P5-201ENST00000435821 1374 ntBASIC4.15□□□□□ -1.74
PAAF1Q9BRP4 ZNF962P-201ENST00000443465 3140 ntBASIC4.15□□□□□ -1.74
PAAF1Q9BRP4 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC4.15□□□□□ -1.74
PAAF1Q9BRP4 Z73965.1-201ENST00000623412 2297 ntBASIC4.15□□□□□ -1.74
PAAF1Q9BRP4 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC4.15□□□□□ -1.74
PAAF1Q9BRP4 AP001273.1-201ENST00000624493 3152 ntBASIC4.15□□□□□ -1.74
PAAF1Q9BRP4 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
PAAF1Q9BRP4 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
PAAF1Q9BRP4 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
PAAF1Q9BRP4 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC4.15□□□□□ -1.74
PAAF1Q9BRP4 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC4.15□□□□□ -1.75
PAAF1Q9BRP4 MIR124-3-201ENST00000384866 87 ntBASIC4.15□□□□□ -1.75
PAAF1Q9BRP4 MIR200C-201ENST00000384980 68 ntBASIC4.15□□□□□ -1.75
PAAF1Q9BRP4 FCF1P10-201ENST00000407590 479 ntBASIC4.15□□□□□ -1.75
PAAF1Q9BRP4 AL359704.1-201ENST00000411586 781 ntBASIC4.15□□□□□ -1.75
PAAF1Q9BRP4 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC4.15□□□□□ -1.75
PAAF1Q9BRP4 HMGB3P23-201ENST00000414981 585 ntBASIC4.15□□□□□ -1.75
PAAF1Q9BRP4 AC127526.1-201ENST00000417526 366 ntBASIC4.15□□□□□ -1.75
PAAF1Q9BRP4 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC4.15□□□□□ -1.75
PAAF1Q9BRP4 AC091286.1-201ENST00000431233 461 ntBASIC4.15□□□□□ -1.75
PAAF1Q9BRP4 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC4.15□□□□□ -1.75
PAAF1Q9BRP4 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
PAAF1Q9BRP4 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC4.15□□□□□ -1.75
PAAF1Q9BRP4 AP1S2P1-201ENST00000457344 379 ntBASIC4.15□□□□□ -1.75
PAAF1Q9BRP4 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC4.15□□□□□ -1.75
PAAF1Q9BRP4 LARP1BP2-201ENST00000486594 519 ntBASIC4.15□□□□□ -1.75
PAAF1Q9BRP4 RPL7P24-201ENST00000493052 752 ntBASIC4.15□□□□□ -1.75
PAAF1Q9BRP4 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC4.15□□□□□ -1.75
PAAF1Q9BRP4 AC017037.1-201ENST00000508460 471 ntBASIC4.15□□□□□ -1.75
PAAF1Q9BRP4 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
PAAF1Q9BRP4 RNU1-95P-201ENST00000516357 160 ntBASIC4.15□□□□□ -1.75
PAAF1Q9BRP4 RNU1-128P-201ENST00000516704 160 ntBASIC4.15□□□□□ -1.75
PAAF1Q9BRP4 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC4.15□□□□□ -1.75
PAAF1Q9BRP4 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC4.15□□□□□ -1.75
PAAF1Q9BRP4 AP003733.3-201ENST00000524942 788 ntTSL 2 BASIC4.15□□□□□ -1.75
PAAF1Q9BRP4 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC4.15□□□□□ -1.75
PAAF1Q9BRP4 EEF1B2P4-201ENST00000551398 348 ntBASIC4.15□□□□□ -1.75
PAAF1Q9BRP4 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC4.15□□□□□ -1.75
PAAF1Q9BRP4 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC4.15□□□□□ -1.75
PAAF1Q9BRP4 MTND6P33-201ENST00000571794 183 ntBASIC4.15□□□□□ -1.75
PAAF1Q9BRP4 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC4.15□□□□□ -1.75
PAAF1Q9BRP4 ZNF415P1-201ENST00000582279 1166 ntBASIC4.15□□□□□ -1.75
PAAF1Q9BRP4 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC4.15□□□□□ -1.75
PAAF1Q9BRP4 DEFB131E-202ENST00000602581 683 ntBASIC4.15□□□□□ -1.75
PAAF1Q9BRP4 AC024220.1-201ENST00000603675 484 ntBASIC4.15□□□□□ -1.75
PAAF1Q9BRP4 AC004853.1-201ENST00000604902 698 ntBASIC4.15□□□□□ -1.75
PAAF1Q9BRP4 AC131902.3-201ENST00000611767 581 ntBASIC4.15□□□□□ -1.75
PAAF1Q9BRP4 AC005344.1-201ENST00000613391 459 ntBASIC4.15□□□□□ -1.75
PAAF1Q9BRP4 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC4.15□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 86.8 ms