Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AL022400.1-201ENST00000423946 935 ntBASIC3.51□□□□□ -1.85
CCDC3Q9BQI4 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC3.51□□□□□ -1.85
CCDC3Q9BQI4 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC3.51□□□□□ -1.85
CCDC3Q9BQI4 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC3.51□□□□□ -1.85
CCDC3Q9BQI4 MRPS18BP2-201ENST00000434310 759 ntBASIC3.51□□□□□ -1.85
CCDC3Q9BQI4 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC3.51□□□□□ -1.85
CCDC3Q9BQI4 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC3.51□□□□□ -1.85
CCDC3Q9BQI4 MTND5P2-201ENST00000442927 1142 ntBASIC3.51□□□□□ -1.85
CCDC3Q9BQI4 AL731568.1-201ENST00000445111 434 ntTSL 2 BASIC3.51□□□□□ -1.85
CCDC3Q9BQI4 RPS20P24-201ENST00000457473 361 ntBASIC3.51□□□□□ -1.85
CCDC3Q9BQI4 RPL21P10-201ENST00000463521 490 ntBASIC3.51□□□□□ -1.85
CCDC3Q9BQI4 RN7SL601P-201ENST00000471221 293 ntBASIC3.51□□□□□ -1.85
CCDC3Q9BQI4 RPS3AP22-201ENST00000488297 769 ntBASIC3.51□□□□□ -1.85
CCDC3Q9BQI4 AP001086.1-201ENST00000494882 321 ntBASIC3.51□□□□□ -1.85
CCDC3Q9BQI4 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC3.51□□□□□ -1.85
CCDC3Q9BQI4 IL7R-204ENST00000506850 1004 ntTSL 2 BASIC3.51□□□□□ -1.85
CCDC3Q9BQI4 MRPS33P3-201ENST00000513456 322 ntBASIC3.51□□□□□ -1.85
CCDC3Q9BQI4 AC104619.2-201ENST00000514293 646 ntTSL 3 BASIC3.51□□□□□ -1.85
CCDC3Q9BQI4 SNORA70.18-201ENST00000516696 98 ntBASIC3.51□□□□□ -1.85
CCDC3Q9BQI4 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC3.51□□□□□ -1.85
CCDC3Q9BQI4 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC3.51□□□□□ -1.85
CCDC3Q9BQI4 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC3.51□□□□□ -1.85
CCDC3Q9BQI4 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC3.51□□□□□ -1.85
CCDC3Q9BQI4 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC3.51□□□□□ -1.85
CCDC3Q9BQI4 AP000857.2-201ENST00000532123 419 ntTSL 3 BASIC3.51□□□□□ -1.85
CCDC3Q9BQI4 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC3.51□□□□□ -1.85
CCDC3Q9BQI4 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
CCDC3Q9BQI4 MIR5186-201ENST00000577504 120 ntBASIC3.51□□□□□ -1.85
CCDC3Q9BQI4 ZNF415P1-201ENST00000582279 1166 ntBASIC3.51□□□□□ -1.85
CCDC3Q9BQI4 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC3.51□□□□□ -1.85
CCDC3Q9BQI4 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC3.51□□□□□ -1.85
CCDC3Q9BQI4 ST7-OT4_4.1-201ENST00000614993 213 ntBASIC3.51□□□□□ -1.85
CCDC3Q9BQI4 AL355365.1-201ENST00000616480 294 ntBASIC3.51□□□□□ -1.85
CCDC3Q9BQI4 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC3.51□□□□□ -1.85
CCDC3Q9BQI4 AC004009.2-201ENST00000623016 728 ntBASIC3.51□□□□□ -1.85
CCDC3Q9BQI4 MTND2P41-201ENST00000637599 773 ntBASIC3.51□□□□□ -1.85
CCDC3Q9BQI4 AC103706.2-201ENST00000638080 240 ntBASIC3.51□□□□□ -1.85
CCDC3Q9BQI4 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC3.51□□□□□ -1.85
CCDC3Q9BQI4 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC3.51□□□□□ -1.85
CCDC3Q9BQI4 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
CCDC3Q9BQI4 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
CCDC3Q9BQI4 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
CCDC3Q9BQI4 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
CCDC3Q9BQI4 ZNF33BP1-201ENST00000452497 1834 ntBASIC3.51□□□□□ -1.85
CCDC3Q9BQI4 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
CCDC3Q9BQI4 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
CCDC3Q9BQI4 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC3.5□□□□□ -1.85
CCDC3Q9BQI4 OTUD4P1-201ENST00000237841 3067 ntBASIC3.5□□□□□ -1.85
CCDC3Q9BQI4 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC3.5□□□□□ -1.85
CCDC3Q9BQI4 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.5□□□□□ -1.85
CCDC3Q9BQI4 AC011477.1-204ENST00000623416 1325 ntBASIC3.5□□□□□ -1.85
CCDC3Q9BQI4 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
CCDC3Q9BQI4 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
CCDC3Q9BQI4 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
CCDC3Q9BQI4 TTC41P-203ENST00000548527 1475 ntTSL 5 BASIC3.5□□□□□ -1.85
CCDC3Q9BQI4 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
CCDC3Q9BQI4 RNU6-1200P-201ENST00000384162 107 ntBASIC3.5□□□□□ -1.85
CCDC3Q9BQI4 RNU6-821P-201ENST00000390995 107 ntBASIC3.5□□□□□ -1.85
CCDC3Q9BQI4 RNU6-837P-201ENST00000391056 108 ntBASIC3.5□□□□□ -1.85
CCDC3Q9BQI4 CASP3-203ENST00000393588 677 ntTSL 4 BASIC3.5□□□□□ -1.85
CCDC3Q9BQI4 AL138878.1-201ENST00000405131 347 ntBASIC3.5□□□□□ -1.85
CCDC3Q9BQI4 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC3.5□□□□□ -1.85
CCDC3Q9BQI4 ZYG11AP1-201ENST00000430329 837 ntBASIC3.5□□□□□ -1.85
CCDC3Q9BQI4 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC3.5□□□□□ -1.85
CCDC3Q9BQI4 BX510359.1-201ENST00000456973 237 ntBASIC3.5□□□□□ -1.85
CCDC3Q9BQI4 CEACAMP4-201ENST00000457676 421 ntBASIC3.5□□□□□ -1.85
CCDC3Q9BQI4 RNU7-136P-201ENST00000458819 69 ntBASIC3.5□□□□□ -1.85
CCDC3Q9BQI4 RPL9P32-201ENST00000464118 620 ntBASIC3.5□□□□□ -1.85
CCDC3Q9BQI4 RPS4XP10-201ENST00000465034 731 ntBASIC3.5□□□□□ -1.85
CCDC3Q9BQI4 SYPL1P1-201ENST00000473622 768 ntBASIC3.5□□□□□ -1.85
CCDC3Q9BQI4 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC3.5□□□□□ -1.85
CCDC3Q9BQI4 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC3.5□□□□□ -1.85
CCDC3Q9BQI4 AC026784.1-201ENST00000507986 352 ntBASIC3.5□□□□□ -1.85
CCDC3Q9BQI4 AC093281.2-201ENST00000510153 597 ntBASIC3.5□□□□□ -1.85
CCDC3Q9BQI4 TEMN3-AS1-201ENST00000510211 401 ntTSL 3 BASIC3.5□□□□□ -1.85
CCDC3Q9BQI4 AC010625.1-201ENST00000511296 403 ntBASIC3.5□□□□□ -1.85
CCDC3Q9BQI4 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC3.5□□□□□ -1.85
CCDC3Q9BQI4 MTND2P38-201ENST00000522536 667 ntBASIC3.5□□□□□ -1.85
CCDC3Q9BQI4 AC239860.2-201ENST00000525886 270 ntBASIC3.5□□□□□ -1.85
CCDC3Q9BQI4 OR7K1P-201ENST00000546439 926 ntBASIC3.5□□□□□ -1.85
CCDC3Q9BQI4 NCAPGP2-201ENST00000557911 754 ntBASIC3.5□□□□□ -1.85
CCDC3Q9BQI4 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.5□□□□□ -1.85
CCDC3Q9BQI4 AL360157.1-201ENST00000565962 87 ntBASIC3.5□□□□□ -1.85
CCDC3Q9BQI4 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.5□□□□□ -1.85
CCDC3Q9BQI4 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC3.5□□□□□ -1.85
CCDC3Q9BQI4 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC3.5□□□□□ -1.85
CCDC3Q9BQI4 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC3.5□□□□□ -1.85
CCDC3Q9BQI4 VN1R90P-201ENST00000595717 726 ntBASIC3.5□□□□□ -1.85
CCDC3Q9BQI4 AL357094.1-201ENST00000603845 844 ntBASIC3.5□□□□□ -1.85
CCDC3Q9BQI4 AC068313.1-201ENST00000604028 1008 ntBASIC3.5□□□□□ -1.85
CCDC3Q9BQI4 AC012531.5-201ENST00000611375 151 ntBASIC3.5□□□□□ -1.85
CCDC3Q9BQI4 AL445264.1-201ENST00000621719 171 ntBASIC3.5□□□□□ -1.85
CCDC3Q9BQI4 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC3.5□□□□□ -1.85
CCDC3Q9BQI4 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC3.5□□□□□ -1.85
CCDC3Q9BQI4 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC3.5□□□□□ -1.85
CCDC3Q9BQI4 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC3.5□□□□□ -1.85
CCDC3Q9BQI4 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC3.5□□□□□ -1.85
CCDC3Q9BQI4 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC3.5□□□□□ -1.85
CCDC3Q9BQI4 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
CCDC3Q9BQI4 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 98.4 ms