Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 AC103706.2-201ENST00000638080 240 ntBASIC4.05□□□□□ -1.76
SKA1Q96BD8 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC4.05□□□□□ -1.76
SKA1Q96BD8 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC4.05□□□□□ -1.76
SKA1Q96BD8 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC4.05□□□□□ -1.76
SKA1Q96BD8 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
SKA1Q96BD8 AC092326.2-201ENST00000624772 1561 ntBASIC4.05□□□□□ -1.76
SKA1Q96BD8 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC4.05□□□□□ -1.76
SKA1Q96BD8 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC4.05□□□□□ -1.76
SKA1Q96BD8 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
SKA1Q96BD8 CUL1P1-201ENST00000509510 2425 ntBASIC4.04□□□□□ -1.76
SKA1Q96BD8 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC4.04□□□□□ -1.76
SKA1Q96BD8 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC4.04□□□□□ -1.76
SKA1Q96BD8 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC4.04□□□□□ -1.76
SKA1Q96BD8 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC4.04□□□□□ -1.76
SKA1Q96BD8 RNU6-1078P-201ENST00000364522 103 ntBASIC4.04□□□□□ -1.76
SKA1Q96BD8 RNA5SP97-201ENST00000365006 84 ntBASIC4.04□□□□□ -1.76
SKA1Q96BD8 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC4.04□□□□□ -1.76
SKA1Q96BD8 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC4.04□□□□□ -1.76
SKA1Q96BD8 RPL21P109-201ENST00000422213 475 ntBASIC4.04□□□□□ -1.76
SKA1Q96BD8 AL035407.1-201ENST00000429211 571 ntBASIC4.04□□□□□ -1.76
SKA1Q96BD8 NEK4P1-201ENST00000433383 879 ntBASIC4.04□□□□□ -1.76
SKA1Q96BD8 AC096638.2-201ENST00000434965 711 ntBASIC4.04□□□□□ -1.76
SKA1Q96BD8 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC4.04□□□□□ -1.76
SKA1Q96BD8 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC4.04□□□□□ -1.76
SKA1Q96BD8 AL358232.1-201ENST00000448030 501 ntBASIC4.04□□□□□ -1.76
SKA1Q96BD8 AL133547.1-201ENST00000448546 220 ntBASIC4.04□□□□□ -1.76
SKA1Q96BD8 VN1R40P-201ENST00000455196 941 ntBASIC4.04□□□□□ -1.76
SKA1Q96BD8 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC4.04□□□□□ -1.76
SKA1Q96BD8 AC104685.1-201ENST00000502445 371 ntBASIC4.04□□□□□ -1.76
SKA1Q96BD8 AC093809.1-201ENST00000509155 340 ntBASIC4.04□□□□□ -1.76
SKA1Q96BD8 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC4.04□□□□□ -1.76
SKA1Q96BD8 LEF1-218ENST00000512172 598 ntTSL 2 BASIC4.04□□□□□ -1.76
SKA1Q96BD8 SNORA70.16-201ENST00000516390 95 ntBASIC4.04□□□□□ -1.76
SKA1Q96BD8 CYCSP30-201ENST00000546447 172 ntBASIC4.04□□□□□ -1.76
SKA1Q96BD8 GLIPR1L1-204ENST00000548623 484 ntTSL 3 BASIC4.04□□□□□ -1.76
SKA1Q96BD8 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC4.04□□□□□ -1.76
SKA1Q96BD8 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC4.04□□□□□ -1.76
SKA1Q96BD8 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC4.04□□□□□ -1.76
SKA1Q96BD8 MIR5684-201ENST00000585074 65 ntBASIC4.04□□□□□ -1.76
SKA1Q96BD8 AC020914.6-201ENST00000594327 272 ntBASIC4.04□□□□□ -1.76
SKA1Q96BD8 AC024563.1-202ENST00000597533 419 ntTSL 3 BASIC4.04□□□□□ -1.76
SKA1Q96BD8 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC4.04□□□□□ -1.76
SKA1Q96BD8 AL450472.3-201ENST00000615578 367 ntBASIC4.04□□□□□ -1.76
SKA1Q96BD8 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC4.04□□□□□ -1.76
SKA1Q96BD8 U7.8-201ENST00000619968 63 ntBASIC4.04□□□□□ -1.76
SKA1Q96BD8 AL139089.1-201ENST00000620372 975 ntBASIC4.04□□□□□ -1.76
SKA1Q96BD8 CR392039.5-201ENST00000623201 510 ntBASIC4.04□□□□□ -1.76
SKA1Q96BD8 MIR4275-201ENST00000636486 87 ntBASIC4.04□□□□□ -1.76
SKA1Q96BD8 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC4.04□□□□□ -1.76
SKA1Q96BD8 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC4.03□□□□□ -1.76
SKA1Q96BD8 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC4.03□□□□□ -1.76
SKA1Q96BD8 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC4.03□□□□□ -1.76
SKA1Q96BD8 RPS4XP5-202ENST00000449995 1334 ntBASIC4.03□□□□□ -1.76
SKA1Q96BD8 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC4.03□□□□□ -1.76
SKA1Q96BD8 IPO8P1-201ENST00000455509 3109 ntBASIC4.03□□□□□ -1.76
SKA1Q96BD8 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
SKA1Q96BD8 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
SKA1Q96BD8 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC4.03□□□□□ -1.76
SKA1Q96BD8 MIR449B-201ENST00000384995 97 ntBASIC4.03□□□□□ -1.76
SKA1Q96BD8 MIR493-201ENST00000385254 89 ntBASIC4.03□□□□□ -1.76
SKA1Q96BD8 RNA5SP171-201ENST00000391071 115 ntBASIC4.03□□□□□ -1.76
SKA1Q96BD8 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
SKA1Q96BD8 PVALB-202ENST00000404171 422 ntTSL 2 BASIC4.03□□□□□ -1.76
SKA1Q96BD8 FAT1P1-201ENST00000406588 507 ntBASIC4.03□□□□□ -1.76
SKA1Q96BD8 U3.42-201ENST00000408746 214 ntBASIC4.03□□□□□ -1.76
SKA1Q96BD8 PIGPP2-201ENST00000411569 458 ntBASIC4.03□□□□□ -1.76
SKA1Q96BD8 AC006946.1-201ENST00000429106 328 ntBASIC4.03□□□□□ -1.76
SKA1Q96BD8 HIGD1AP4-201ENST00000430194 280 ntBASIC4.03□□□□□ -1.76
SKA1Q96BD8 UBE2V1P13-201ENST00000436983 439 ntBASIC4.03□□□□□ -1.76
SKA1Q96BD8 AC108734.1-201ENST00000439549 399 ntBASIC4.03□□□□□ -1.76
SKA1Q96BD8 AL353743.2-203ENST00000443630 492 ntTSL 3 BASIC4.03□□□□□ -1.76
SKA1Q96BD8 AC112653.1-201ENST00000443851 386 ntBASIC4.03□□□□□ -1.76
SKA1Q96BD8 RPS11P1-201ENST00000451072 473 ntBASIC4.03□□□□□ -1.76
SKA1Q96BD8 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC4.03□□□□□ -1.76
SKA1Q96BD8 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC4.03□□□□□ -1.76
SKA1Q96BD8 RPS3AP6-201ENST00000484430 795 ntBASIC4.03□□□□□ -1.76
SKA1Q96BD8 RPS3A-204ENST00000506126 862 ntTSL 5 BASIC4.03□□□□□ -1.76
SKA1Q96BD8 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC4.03□□□□□ -1.76
SKA1Q96BD8 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC4.03□□□□□ -1.76
SKA1Q96BD8 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC4.03□□□□□ -1.76
SKA1Q96BD8 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC4.03□□□□□ -1.76
SKA1Q96BD8 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC4.03□□□□□ -1.76
SKA1Q96BD8 AC009097.3-201ENST00000563557 1018 ntBASIC4.03□□□□□ -1.76
SKA1Q96BD8 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC4.03□□□□□ -1.76
SKA1Q96BD8 MIR4444-1-201ENST00000581696 74 ntBASIC4.03□□□□□ -1.76
SKA1Q96BD8 MIR4444-2-201ENST00000584390 74 ntBASIC4.03□□□□□ -1.76
SKA1Q96BD8 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC4.03□□□□□ -1.76
SKA1Q96BD8 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC4.03□□□□□ -1.76
SKA1Q96BD8 AC008962.1-201ENST00000605729 304 ntBASIC4.03□□□□□ -1.76
SKA1Q96BD8 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC4.03□□□□□ -1.76
SKA1Q96BD8 AC018816.2-201ENST00000621460 353 ntBASIC4.03□□□□□ -1.76
SKA1Q96BD8 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC4.03□□□□□ -1.76
SKA1Q96BD8 TNPO1P3-201ENST00000436471 2662 ntBASIC4.03□□□□□ -1.76
SKA1Q96BD8 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC4.03□□□□□ -1.76
SKA1Q96BD8 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC4.02□□□□□ -1.77
SKA1Q96BD8 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
SKA1Q96BD8 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
SKA1Q96BD8 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
SKA1Q96BD8 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
SKA1Q96BD8 U1.1-201ENST00000384101 164 ntBASIC4.02□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 105.2 ms