Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AC037471.2-201ENST00000564941 598 ntBASIC3.23□□□□□ -1.89
ZNF540Q8NDQ6 AC087499.8-201ENST00000578406 226 ntBASIC3.23□□□□□ -1.89
ZNF540Q8NDQ6 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
ZNF540Q8NDQ6 AC018926.1-201ENST00000616335 435 ntBASIC3.23□□□□□ -1.89
ZNF540Q8NDQ6 AC244100.1-202ENST00000621554 382 ntBASIC3.23□□□□□ -1.89
ZNF540Q8NDQ6 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
ZNF540Q8NDQ6 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC3.23□□□□□ -1.89
ZNF540Q8NDQ6 AC004972.1-201ENST00000623934 2209 ntBASIC3.23□□□□□ -1.89
ZNF540Q8NDQ6 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.22□□□□□ -1.89
ZNF540Q8NDQ6 POU1F1-202ENST00000350375 1491 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
ZNF540Q8NDQ6 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
ZNF540Q8NDQ6 CFAP97-201ENST00000296775 903 ntTSL 5 BASIC3.22□□□□□ -1.89
ZNF540Q8NDQ6 GSTA1-201ENST00000334575 1019 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
ZNF540Q8NDQ6 SNORA5A-201ENST00000384111 134 ntBASIC3.22□□□□□ -1.89
ZNF540Q8NDQ6 AL035423.1-201ENST00000420331 213 ntBASIC3.22□□□□□ -1.89
ZNF540Q8NDQ6 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC3.22□□□□□ -1.89
ZNF540Q8NDQ6 Z97206.2-201ENST00000423489 589 ntTSL 3 BASIC3.22□□□□□ -1.89
ZNF540Q8NDQ6 GTF2IP23-201ENST00000423746 351 ntBASIC3.22□□□□□ -1.89
ZNF540Q8NDQ6 BX890604.2-201ENST00000427883 474 ntBASIC3.22□□□□□ -1.89
ZNF540Q8NDQ6 AP000907.1-201ENST00000428428 510 ntBASIC3.22□□□□□ -1.89
ZNF540Q8NDQ6 MTCO1P3-201ENST00000429327 192 ntBASIC3.22□□□□□ -1.89
ZNF540Q8NDQ6 AC011891.1-201ENST00000437088 432 ntTSL 3 BASIC3.22□□□□□ -1.89
ZNF540Q8NDQ6 FTH1P1-201ENST00000437933 532 ntBASIC3.22□□□□□ -1.89
ZNF540Q8NDQ6 MTCO3P11-201ENST00000455103 774 ntBASIC3.22□□□□□ -1.89
ZNF540Q8NDQ6 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC3.22□□□□□ -1.89
ZNF540Q8NDQ6 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC3.22□□□□□ -1.89
ZNF540Q8NDQ6 SNORD105B-201ENST00000458770 79 ntBASIC3.22□□□□□ -1.89
ZNF540Q8NDQ6 snoU13.22-201ENST00000459428 104 ntBASIC3.22□□□□□ -1.89
ZNF540Q8NDQ6 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC3.22□□□□□ -1.89
ZNF540Q8NDQ6 AC114967.1-201ENST00000504890 259 ntBASIC3.22□□□□□ -1.89
ZNF540Q8NDQ6 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC3.22□□□□□ -1.89
ZNF540Q8NDQ6 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC3.22□□□□□ -1.89
ZNF540Q8NDQ6 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC3.22□□□□□ -1.89
ZNF540Q8NDQ6 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC3.22□□□□□ -1.89
ZNF540Q8NDQ6 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC3.22□□□□□ -1.89
ZNF540Q8NDQ6 AC087894.1-201ENST00000538359 518 ntBASIC3.22□□□□□ -1.89
ZNF540Q8NDQ6 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC3.22□□□□□ -1.89
ZNF540Q8NDQ6 AC125611.1-201ENST00000549563 229 ntBASIC3.22□□□□□ -1.89
ZNF540Q8NDQ6 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.22□□□□□ -1.89
ZNF540Q8NDQ6 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC3.22□□□□□ -1.89
ZNF540Q8NDQ6 LARP7P2-201ENST00000575306 125 ntBASIC3.22□□□□□ -1.89
ZNF540Q8NDQ6 AC105224.1-201ENST00000587055 421 ntBASIC3.22□□□□□ -1.89
ZNF540Q8NDQ6 DUXAP11-201ENST00000603858 526 ntBASIC3.22□□□□□ -1.89
ZNF540Q8NDQ6 AC026790.2-201ENST00000606282 430 ntBASIC3.22□□□□□ -1.89
ZNF540Q8NDQ6 AC004009.2-201ENST00000623016 728 ntBASIC3.22□□□□□ -1.89
ZNF540Q8NDQ6 AC004777.1-201ENST00000624317 287 ntBASIC3.22□□□□□ -1.89
ZNF540Q8NDQ6 MKKS-204ENST00000639674 192 ntBASIC3.22□□□□□ -1.89
ZNF540Q8NDQ6 AC138915.1-201ENST00000565427 1685 ntBASIC3.22□□□□□ -1.89
ZNF540Q8NDQ6 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC3.22□□□□□ -1.89
ZNF540Q8NDQ6 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.22□□□□□ -1.89
ZNF540Q8NDQ6 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.22□□□□□ -1.89
ZNF540Q8NDQ6 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
ZNF540Q8NDQ6 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC3.21□□□□□ -1.9
ZNF540Q8NDQ6 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC3.21□□□□□ -1.9
ZNF540Q8NDQ6 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
ZNF540Q8NDQ6 TAS2R10-201ENST00000240619 1042 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
ZNF540Q8NDQ6 SNORA71.3-201ENST00000362582 128 ntBASIC3.21□□□□□ -1.9
ZNF540Q8NDQ6 RNA5SP72-201ENST00000364442 117 ntBASIC3.21□□□□□ -1.9
ZNF540Q8NDQ6 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC3.21□□□□□ -1.9
ZNF540Q8NDQ6 AC126124.2-201ENST00000413542 321 ntBASIC3.21□□□□□ -1.9
ZNF540Q8NDQ6 HMGN2P30-201ENST00000423237 256 ntBASIC3.21□□□□□ -1.9
ZNF540Q8NDQ6 RPL23AP82-202ENST00000427528 469 ntBASIC3.21□□□□□ -1.9
ZNF540Q8NDQ6 AC092634.2-201ENST00000428146 1010 ntBASIC3.21□□□□□ -1.9
ZNF540Q8NDQ6 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC3.21□□□□□ -1.9
ZNF540Q8NDQ6 AL357507.1-201ENST00000435946 669 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
ZNF540Q8NDQ6 AL157387.1-201ENST00000436077 335 ntTSL 2 BASIC3.21□□□□□ -1.9
ZNF540Q8NDQ6 RPL23AP22-201ENST00000437556 453 ntBASIC3.21□□□□□ -1.9
ZNF540Q8NDQ6 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC3.21□□□□□ -1.9
ZNF540Q8NDQ6 SNRPGP6-201ENST00000451124 220 ntBASIC3.21□□□□□ -1.9
ZNF540Q8NDQ6 AC244505.3-201ENST00000454598 187 ntBASIC3.21□□□□□ -1.9
ZNF540Q8NDQ6 AC026410.2-201ENST00000460281 156 ntBASIC3.21□□□□□ -1.9
ZNF540Q8NDQ6 CENPBD1P1-201ENST00000464061 469 ntBASIC3.21□□□□□ -1.9
ZNF540Q8NDQ6 RPL23AP67-201ENST00000465341 474 ntBASIC3.21□□□□□ -1.9
ZNF540Q8NDQ6 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
ZNF540Q8NDQ6 LINC02325-201ENST00000499910 1115 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
ZNF540Q8NDQ6 LINC02144-201ENST00000511417 592 ntTSL 4 BASIC3.21□□□□□ -1.9
ZNF540Q8NDQ6 AC034223.2-201ENST00000511840 425 ntTSL 3 BASIC3.21□□□□□ -1.9
ZNF540Q8NDQ6 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC3.21□□□□□ -1.9
ZNF540Q8NDQ6 AC107934.2-201ENST00000518653 310 ntBASIC3.21□□□□□ -1.9
ZNF540Q8NDQ6 NAT2-202ENST00000520116 716 ntTSL 3 BASIC3.21□□□□□ -1.9
ZNF540Q8NDQ6 AC068657.1-201ENST00000520807 306 ntBASIC3.21□□□□□ -1.9
ZNF540Q8NDQ6 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC3.21□□□□□ -1.9
ZNF540Q8NDQ6 AC104027.1-201ENST00000521887 300 ntBASIC3.21□□□□□ -1.9
ZNF540Q8NDQ6 OR8I1P-201ENST00000529291 931 ntBASIC3.21□□□□□ -1.9
ZNF540Q8NDQ6 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
ZNF540Q8NDQ6 AC024224.1-201ENST00000538284 609 ntBASIC3.21□□□□□ -1.9
ZNF540Q8NDQ6 AC092451.2-201ENST00000538746 658 ntBASIC3.21□□□□□ -1.9
ZNF540Q8NDQ6 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC3.21□□□□□ -1.9
ZNF540Q8NDQ6 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC3.21□□□□□ -1.9
ZNF540Q8NDQ6 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC3.21□□□□□ -1.9
ZNF540Q8NDQ6 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC3.21□□□□□ -1.9
ZNF540Q8NDQ6 U73023.1-201ENST00000603134 700 ntBASIC3.21□□□□□ -1.9
ZNF540Q8NDQ6 AL133507.1-201ENST00000605269 557 ntBASIC3.21□□□□□ -1.9
ZNF540Q8NDQ6 AL583856.2-201ENST00000606298 543 ntBASIC3.21□□□□□ -1.9
ZNF540Q8NDQ6 U3.45-201ENST00000607547 219 ntBASIC3.21□□□□□ -1.9
ZNF540Q8NDQ6 AC084824.5-201ENST00000612009 413 ntBASIC3.21□□□□□ -1.9
ZNF540Q8NDQ6 AC009093.8-201ENST00000641769 292 ntBASIC3.21□□□□□ -1.9
ZNF540Q8NDQ6 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.21□□□□□ -1.9
ZNF540Q8NDQ6 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.21□□□□□ -1.9
ZNF540Q8NDQ6 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 80.5 ms