Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC2.96□□□□□ -1.94
SKA3Q8IX90 AL355365.1-201ENST00000616480 294 ntBASIC2.96□□□□□ -1.94
SKA3Q8IX90 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC2.96□□□□□ -1.94
SKA3Q8IX90 AC092650.2-201ENST00000619984 902 ntBASIC2.96□□□□□ -1.94
SKA3Q8IX90 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
SKA3Q8IX90 AC040168.1-201ENST00000623594 991 ntBASIC2.96□□□□□ -1.94
SKA3Q8IX90 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
SKA3Q8IX90 MTND2P41-201ENST00000637599 773 ntBASIC2.96□□□□□ -1.94
SKA3Q8IX90 U6.101-201ENST00000637707 76 ntBASIC2.96□□□□□ -1.94
SKA3Q8IX90 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
SKA3Q8IX90 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC2.96□□□□□ -1.94
SKA3Q8IX90 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
SKA3Q8IX90 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
SKA3Q8IX90 ZNF33BP1-201ENST00000452497 1834 ntBASIC2.96□□□□□ -1.94
SKA3Q8IX90 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC2.96□□□□□ -1.94
SKA3Q8IX90 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC2.95□□□□□ -1.94
SKA3Q8IX90 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC2.95□□□□□ -1.94
SKA3Q8IX90 SNORA71.3-201ENST00000362582 128 ntBASIC2.95□□□□□ -1.94
SKA3Q8IX90 SNORA72.3-201ENST00000365074 132 ntBASIC2.95□□□□□ -1.94
SKA3Q8IX90 SNORD116.1-201ENST00000365628 92 ntBASIC2.95□□□□□ -1.94
SKA3Q8IX90 CCDC169-203ENST00000379862 624 ntTSL 5 BASIC2.95□□□□□ -1.94
SKA3Q8IX90 RNU6-1242P-201ENST00000391052 103 ntBASIC2.95□□□□□ -1.94
SKA3Q8IX90 AC068533.2-201ENST00000411872 306 ntBASIC2.95□□□□□ -1.94
SKA3Q8IX90 AL513175.2-201ENST00000422071 443 ntBASIC2.95□□□□□ -1.94
SKA3Q8IX90 AC006548.1-201ENST00000427470 102 ntBASIC2.95□□□□□ -1.94
SKA3Q8IX90 RPL23AP82-202ENST00000427528 469 ntBASIC2.95□□□□□ -1.94
SKA3Q8IX90 AC093151.1-201ENST00000427711 313 ntBASIC2.95□□□□□ -1.94
SKA3Q8IX90 AL050321.1-201ENST00000432363 400 ntBASIC2.95□□□□□ -1.94
SKA3Q8IX90 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC2.95□□□□□ -1.94
SKA3Q8IX90 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC2.95□□□□□ -1.94
SKA3Q8IX90 RPL5P24-201ENST00000463742 885 ntBASIC2.95□□□□□ -1.94
SKA3Q8IX90 CENPBD1P1-201ENST00000464061 469 ntBASIC2.95□□□□□ -1.94
SKA3Q8IX90 VN1R17P-201ENST00000472048 1090 ntBASIC2.95□□□□□ -1.94
SKA3Q8IX90 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC2.95□□□□□ -1.94
SKA3Q8IX90 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
SKA3Q8IX90 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC2.95□□□□□ -1.94
SKA3Q8IX90 AC104803.1-201ENST00000506917 529 ntTSL 3 BASIC2.95□□□□□ -1.94
SKA3Q8IX90 MTND4LP22-201ENST00000508209 276 ntBASIC2.95□□□□□ -1.94
SKA3Q8IX90 AC026412.2-201ENST00000512270 1075 ntBASIC2.95□□□□□ -1.94
SKA3Q8IX90 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC2.95□□□□□ -1.94
SKA3Q8IX90 SMILR-201ENST00000533992 553 ntTSL 4 BASIC2.95□□□□□ -1.94
SKA3Q8IX90 AP003170.4-201ENST00000543486 586 ntTSL 3 BASIC2.95□□□□□ -1.94
SKA3Q8IX90 CCNG2P1-201ENST00000549521 1000 ntBASIC2.95□□□□□ -1.94
SKA3Q8IX90 AC008147.1-201ENST00000551284 325 ntTSL 3 BASIC2.95□□□□□ -1.94
SKA3Q8IX90 AL163153.1-201ENST00000554223 283 ntBASIC2.95□□□□□ -1.94
SKA3Q8IX90 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC2.95□□□□□ -1.94
SKA3Q8IX90 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC2.95□□□□□ -1.94
SKA3Q8IX90 AL355812.1-201ENST00000603215 216 ntBASIC2.95□□□□□ -1.94
SKA3Q8IX90 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC2.95□□□□□ -1.94
SKA3Q8IX90 AL451074.6-201ENST00000608512 729 ntBASIC2.95□□□□□ -1.94
SKA3Q8IX90 AC107075.1-201ENST00000613695 314 ntBASIC2.95□□□□□ -1.94
SKA3Q8IX90 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC2.95□□□□□ -1.94
SKA3Q8IX90 CR381572.1-201ENST00000625098 102 ntBASIC2.95□□□□□ -1.94
SKA3Q8IX90 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC2.95□□□□□ -1.94
SKA3Q8IX90 MIR1322-201ENST00000638013 71 ntBASIC2.95□□□□□ -1.94
SKA3Q8IX90 OR8B1P-202ENST00000641132 1178 ntBASIC2.95□□□□□ -1.94
SKA3Q8IX90 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC2.95□□□□□ -1.94
SKA3Q8IX90 AC017071.1-201ENST00000564407 2204 ntBASIC2.95□□□□□ -1.94
SKA3Q8IX90 SLC10A5P1-201ENST00000379063 1306 ntBASIC2.94□□□□□ -1.94
SKA3Q8IX90 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC2.94□□□□□ -1.94
SKA3Q8IX90 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC2.94□□□□□ -1.94
SKA3Q8IX90 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC2.94□□□□□ -1.94
SKA3Q8IX90 MTCO1P12-201ENST00000414273 1543 ntBASIC2.94□□□□□ -1.94
SKA3Q8IX90 CR383658.2-201ENST00000547576 1525 ntBASIC2.94□□□□□ -1.94
SKA3Q8IX90 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC2.94□□□□□ -1.94
SKA3Q8IX90 RNA5SP258-201ENST00000362750 119 ntBASIC2.94□□□□□ -1.94
SKA3Q8IX90 SNORA51.2-201ENST00000364595 132 ntBASIC2.94□□□□□ -1.94
SKA3Q8IX90 RNU6-629P-201ENST00000384061 103 ntBASIC2.94□□□□□ -1.94
SKA3Q8IX90 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC2.94□□□□□ -1.94
SKA3Q8IX90 MIR887-201ENST00000401258 79 ntBASIC2.94□□□□□ -1.94
SKA3Q8IX90 AL138880.1-201ENST00000405824 642 ntBASIC2.94□□□□□ -1.94
SKA3Q8IX90 AL031121.1-201ENST00000406553 254 ntBASIC2.94□□□□□ -1.94
SKA3Q8IX90 RNA5SP344-201ENST00000411081 104 ntBASIC2.94□□□□□ -1.94
SKA3Q8IX90 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC2.94□□□□□ -1.94
SKA3Q8IX90 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
SKA3Q8IX90 BMS1P22-201ENST00000414726 313 ntBASIC2.94□□□□□ -1.94
SKA3Q8IX90 HSFY1P1-201ENST00000423928 1178 ntBASIC2.94□□□□□ -1.94
SKA3Q8IX90 AL159987.2-201ENST00000432754 307 ntBASIC2.94□□□□□ -1.94
SKA3Q8IX90 HMGB1P12-201ENST00000438594 598 ntBASIC2.94□□□□□ -1.94
SKA3Q8IX90 MTCYBP11-201ENST00000447254 1109 ntBASIC2.94□□□□□ -1.94
SKA3Q8IX90 RPL39P6-201ENST00000448289 150 ntBASIC2.94□□□□□ -1.94
SKA3Q8IX90 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC2.94□□□□□ -1.94
SKA3Q8IX90 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC2.94□□□□□ -1.94
SKA3Q8IX90 BTF3P5-201ENST00000457252 467 ntBASIC2.94□□□□□ -1.94
SKA3Q8IX90 AC026410.2-201ENST00000460281 156 ntBASIC2.94□□□□□ -1.94
SKA3Q8IX90 RPL21P10-201ENST00000463521 490 ntBASIC2.94□□□□□ -1.94
SKA3Q8IX90 RNU6-27P-201ENST00000516146 107 ntBASIC2.94□□□□□ -1.94
SKA3Q8IX90 DUXAP2-201ENST00000519198 589 ntBASIC2.94□□□□□ -1.94
SKA3Q8IX90 AC007536.1-201ENST00000533382 349 ntBASIC2.94□□□□□ -1.94
SKA3Q8IX90 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC2.94□□□□□ -1.94
SKA3Q8IX90 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC2.94□□□□□ -1.94
SKA3Q8IX90 AC133065.1-201ENST00000572017 575 ntTSL 3 BASIC2.94□□□□□ -1.94
SKA3Q8IX90 BNIP3P24-201ENST00000593398 557 ntBASIC2.94□□□□□ -1.94
SKA3Q8IX90 AC008739.3-201ENST00000603262 127 ntBASIC2.94□□□□□ -1.94
SKA3Q8IX90 AC009974.1-201ENST00000608881 455 ntBASIC2.94□□□□□ -1.94
SKA3Q8IX90 AL050303.3-201ENST00000613704 284 ntBASIC2.94□□□□□ -1.94
SKA3Q8IX90 RDM1-219ENST00000615378 542 ntTSL 3 BASIC2.94□□□□□ -1.94
SKA3Q8IX90 AC015967.1-201ENST00000619893 476 ntBASIC2.94□□□□□ -1.94
SKA3Q8IX90 AL356321.1-201ENST00000621360 228 ntBASIC2.94□□□□□ -1.94
SKA3Q8IX90 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC2.94□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 92.8 ms