Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC1.3□□□□□ -2.2
LINC00643Q86TS7 AC116618.1-201ENST00000634617 774 ntBASIC1.3□□□□□ -2.2
LINC00643Q86TS7 AC008432.1-201ENST00000615912 1320 ntBASIC1.3□□□□□ -2.2
LINC00643Q86TS7 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC1.3□□□□□ -2.2
LINC00643Q86TS7 AL137003.2-201ENST00000606924 2538 ntBASIC1.3□□□□□ -2.2
LINC00643Q86TS7 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC1.3□□□□□ -2.2
LINC00643Q86TS7 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC1.3□□□□□ -2.2
LINC00643Q86TS7 IL33-202ENST00000417746 2327 ntTSL 2 BASIC1.29□□□□□ -2.2
LINC00643Q86TS7 OFD1P5Y-201ENST00000447585 2590 ntBASIC1.29□□□□□ -2.2
LINC00643Q86TS7 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC1.29□□□□□ -2.2
LINC00643Q86TS7 SNORA63.1-201ENST00000362493 131 ntBASIC1.29□□□□□ -2.2
LINC00643Q86TS7 RNU1-33P-201ENST00000364249 162 ntBASIC1.29□□□□□ -2.2
LINC00643Q86TS7 RNU1-112P-201ENST00000364401 164 ntBASIC1.29□□□□□ -2.2
LINC00643Q86TS7 RNU1-13P-201ENST00000384499 162 ntBASIC1.29□□□□□ -2.2
LINC00643Q86TS7 SNORA67.4-201ENST00000384688 142 ntBASIC1.29□□□□□ -2.2
LINC00643Q86TS7 RNU6-997P-201ENST00000384725 107 ntBASIC1.29□□□□□ -2.2
LINC00643Q86TS7 MIR27B-201ENST00000385129 97 ntBASIC1.29□□□□□ -2.2
LINC00643Q86TS7 MIR9-1-201ENST00000385198 89 ntBASIC1.29□□□□□ -2.2
LINC00643Q86TS7 GSTA9P-201ENST00000406231 611 ntBASIC1.29□□□□□ -2.2
LINC00643Q86TS7 AL450338.1-201ENST00000407987 512 ntBASIC1.29□□□□□ -2.2
LINC00643Q86TS7 MIR1250-201ENST00000408098 113 ntBASIC1.29□□□□□ -2.2
LINC00643Q86TS7 RNU6-628P-201ENST00000410675 107 ntBASIC1.29□□□□□ -2.2
LINC00643Q86TS7 MYO16-AS2-201ENST00000412809 436 ntTSL 3 BASIC1.29□□□□□ -2.2
LINC00643Q86TS7 AC009480.2-201ENST00000422916 432 ntBASIC1.29□□□□□ -2.2
LINC00643Q86TS7 AC012668.2-201ENST00000431727 503 ntTSL 3 BASIC1.29□□□□□ -2.2
LINC00643Q86TS7 RPS3AP12-201ENST00000443616 753 ntBASIC1.29□□□□□ -2.2
LINC00643Q86TS7 RPL6P5-201ENST00000445678 828 ntBASIC1.29□□□□□ -2.2
LINC00643Q86TS7 LINC01376-204ENST00000449124 626 ntTSL 2 BASIC1.29□□□□□ -2.2
LINC00643Q86TS7 AC012355.1-201ENST00000450290 769 ntTSL 3 BASIC1.29□□□□□ -2.2
LINC00643Q86TS7 AC010099.1-201ENST00000455434 375 ntBASIC1.29□□□□□ -2.2
LINC00643Q86TS7 PPP1R2P5-201ENST00000457256 603 ntBASIC1.29□□□□□ -2.2
LINC00643Q86TS7 AC096992.1-201ENST00000459808 709 ntBASIC1.29□□□□□ -2.2
LINC00643Q86TS7 PDCD10-214ENST00000487947 716 ntTSL 5 BASIC1.29□□□□□ -2.2
LINC00643Q86TS7 AC024579.1-201ENST00000503685 371 ntTSL 5 BASIC1.29□□□□□ -2.2
LINC00643Q86TS7 LINC02224-201ENST00000505706 584 ntTSL 4 BASIC1.29□□□□□ -2.2
LINC00643Q86TS7 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC1.29□□□□□ -2.2
LINC00643Q86TS7 OR4V1P-201ENST00000525394 1140 ntBASIC1.29□□□□□ -2.2
LINC00643Q86TS7 GLYCAM1-201ENST00000546596 285 ntBASIC1.29□□□□□ -2.2
LINC00643Q86TS7 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC1.29□□□□□ -2.2
LINC00643Q86TS7 MTND4LP24-201ENST00000572277 291 ntBASIC1.29□□□□□ -2.2
LINC00643Q86TS7 MIR5007-201ENST00000583098 95 ntBASIC1.29□□□□□ -2.2
LINC00643Q86TS7 AL161423.1-201ENST00000613700 262 ntBASIC1.29□□□□□ -2.2
LINC00643Q86TS7 UCA1.1-201ENST00000620952 75 ntBASIC1.29□□□□□ -2.2
LINC00643Q86TS7 RBMS3-AS3-202ENST00000635847 738 ntTSL 5 BASIC1.29□□□□□ -2.2
LINC00643Q86TS7 OR5T1-202ENST00000641665 1471 ntAPPRIS P1 BASIC1.29□□□□□ -2.2
LINC00643Q86TS7 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC1.29□□□□□ -2.2
LINC00643Q86TS7 AC009487.4-201ENST00000624969 3585 ntBASIC1.29□□□□□ -2.2
LINC00643Q86TS7 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.28□□□□□ -2.2
LINC00643Q86TS7 DYNAP-201ENST00000321600 2027 ntAPPRIS P3 TSL 2 BASIC1.28□□□□□ -2.2
LINC00643Q86TS7 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.28□□□□□ -2.2
LINC00643Q86TS7 XGY1-201ENST00000381172 446 ntBASIC1.28□□□□□ -2.2
LINC00643Q86TS7 RAB28P1-201ENST00000411517 641 ntBASIC1.28□□□□□ -2.2
LINC00643Q86TS7 XKRYP1-201ENST00000423438 492 ntBASIC1.28□□□□□ -2.2
LINC00643Q86TS7 AC009414.1-201ENST00000427200 443 ntBASIC1.28□□□□□ -2.2
LINC00643Q86TS7 BRWD1P3-201ENST00000428816 390 ntBASIC1.28□□□□□ -2.2
LINC00643Q86TS7 XKRYP2-201ENST00000432915 492 ntBASIC1.28□□□□□ -2.2
LINC00643Q86TS7 CBWD4P-201ENST00000445695 655 ntBASIC1.28□□□□□ -2.2
LINC00643Q86TS7 AC004022.1-201ENST00000447766 1066 ntBASIC1.28□□□□□ -2.2
LINC00643Q86TS7 SNAP25-AS1-204ENST00000451151 867 ntTSL 2 BASIC1.28□□□□□ -2.2
LINC00643Q86TS7 TRGVB-201ENST00000453257 471 ntBASIC1.28□□□□□ -2.2
LINC00643Q86TS7 NDUFA12P1-201ENST00000455914 406 ntBASIC1.28□□□□□ -2.2
LINC00643Q86TS7 RPS29P33-201ENST00000456717 146 ntBASIC1.28□□□□□ -2.2
LINC00643Q86TS7 BZW1P2-201ENST00000473537 826 ntBASIC1.28□□□□□ -2.2
LINC00643Q86TS7 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC1.28□□□□□ -2.2
LINC00643Q86TS7 FO393419.2-201ENST00000492975 428 ntTSL 3 BASIC1.28□□□□□ -2.2
LINC00643Q86TS7 RPS27P26-201ENST00000494583 239 ntBASIC1.28□□□□□ -2.2
LINC00643Q86TS7 SOX2-OT-216ENST00000497122 578 ntTSL 4 BASIC1.28□□□□□ -2.2
LINC00643Q86TS7 AC008696.2-201ENST00000503323 825 ntTSL 3 BASIC1.28□□□□□ -2.2
LINC00643Q86TS7 AC010285.3-201ENST00000511668 676 ntBASIC1.28□□□□□ -2.2
LINC00643Q86TS7 AC096725.1-201ENST00000514266 313 ntBASIC1.28□□□□□ -2.2
LINC00643Q86TS7 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC1.28□□□□□ -2.2
LINC00643Q86TS7 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC1.28□□□□□ -2.2
LINC00643Q86TS7 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC1.28□□□□□ -2.2
LINC00643Q86TS7 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC1.28□□□□□ -2.2
LINC00643Q86TS7 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC1.28□□□□□ -2.2
LINC00643Q86TS7 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC1.28□□□□□ -2.2
LINC00643Q86TS7 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC1.28□□□□□ -2.2
LINC00643Q86TS7 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC1.28□□□□□ -2.2
LINC00643Q86TS7 AC105020.2-201ENST00000564683 572 ntTSL 5 BASIC1.28□□□□□ -2.2
LINC00643Q86TS7 MIR5096-201ENST00000583713 70 ntBASIC1.28□□□□□ -2.2
LINC00643Q86TS7 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC1.28□□□□□ -2.2
LINC00643Q86TS7 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC1.28□□□□□ -2.2
LINC00643Q86TS7 AC025594.3-201ENST00000613068 790 ntBASIC1.28□□□□□ -2.2
LINC00643Q86TS7 MIR6132-201ENST00000622083 109 ntBASIC1.28□□□□□ -2.2
LINC00643Q86TS7 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC1.28□□□□□ -2.2
LINC00643Q86TS7 OR5H6-202ENST00000641416 1032 ntAPPRIS P1 BASIC1.28□□□□□ -2.2
LINC00643Q86TS7 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC1.28□□□□□ -2.2
LINC00643Q86TS7 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC1.28□□□□□ -2.2
LINC00643Q86TS7 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC1.28□□□□□ -2.2
LINC00643Q86TS7 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC1.28□□□□□ -2.21
LINC00643Q86TS7 ADAM3A-203ENST00000461344 2157 ntBASIC1.27□□□□□ -2.21
LINC00643Q86TS7 RNU4-42P-201ENST00000364738 142 ntBASIC1.27□□□□□ -2.21
LINC00643Q86TS7 KLRC3-201ENST00000381903 798 ntAPPRIS P3 TSL 1 (best) BASIC1.27□□□□□ -2.21
LINC00643Q86TS7 IGKV5-2-201ENST00000390244 408 ntAPPRIS P1 BASIC1.27□□□□□ -2.21
LINC00643Q86TS7 U8.14-201ENST00000390843 143 ntBASIC1.27□□□□□ -2.21
LINC00643Q86TS7 RNA5SP354-201ENST00000391247 136 ntBASIC1.27□□□□□ -2.21
LINC00643Q86TS7 RPS4XP9-201ENST00000405151 780 ntBASIC1.27□□□□□ -2.21
LINC00643Q86TS7 RN7SKP140-201ENST00000411196 284 ntBASIC1.27□□□□□ -2.21
LINC00643Q86TS7 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC1.27□□□□□ -2.21
LINC00643Q86TS7 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC1.27□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 102.1 ms