Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 VN1R31P-201ENST00000417498 730 ntBASIC1.6□□□□□ -2.15
VPS13CQ709C8 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC1.6□□□□□ -2.15
VPS13CQ709C8 SSXP1-201ENST00000453640 473 ntBASIC1.6□□□□□ -2.15
VPS13CQ709C8 RPS15AP17-201ENST00000470598 390 ntBASIC1.6□□□□□ -2.15
VPS13CQ709C8 AP000852.1-201ENST00000472460 573 ntBASIC1.6□□□□□ -2.15
VPS13CQ709C8 AC012360.2-201ENST00000609349 391 ntBASIC1.6□□□□□ -2.15
VPS13CQ709C8 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
VPS13CQ709C8 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC1.6□□□□□ -2.15
VPS13CQ709C8 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC1.6□□□□□ -2.15
VPS13CQ709C8 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC1.6□□□□□ -2.15
VPS13CQ709C8 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC1.59□□□□□ -2.15
VPS13CQ709C8 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC1.59□□□□□ -2.15
VPS13CQ709C8 AC010723.1-201ENST00000435111 540 ntTSL 3 BASIC1.59□□□□□ -2.15
VPS13CQ709C8 MTND4LP16-201ENST00000440828 295 ntBASIC1.59□□□□□ -2.15
VPS13CQ709C8 CBWD4P-201ENST00000445695 655 ntBASIC1.59□□□□□ -2.15
VPS13CQ709C8 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC1.59□□□□□ -2.15
VPS13CQ709C8 AL161670.1-201ENST00000554348 137 ntBASIC1.59□□□□□ -2.15
VPS13CQ709C8 AL731537.2-201ENST00000561565 951 ntBASIC1.59□□□□□ -2.15
VPS13CQ709C8 HMGN2P28-201ENST00000606102 262 ntBASIC1.59□□□□□ -2.15
VPS13CQ709C8 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC1.59□□□□□ -2.15
VPS13CQ709C8 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.59□□□□□ -2.15
VPS13CQ709C8 Y_RNA.205-201ENST00000364128 113 ntBASIC1.59□□□□□ -2.15
VPS13CQ709C8 RNU6-1-201ENST00000383898 107 ntBASIC1.59□□□□□ -2.15
VPS13CQ709C8 RNU6-42P-201ENST00000384165 107 ntBASIC1.59□□□□□ -2.15
VPS13CQ709C8 RNU6-36P-201ENST00000384172 107 ntBASIC1.59□□□□□ -2.15
VPS13CQ709C8 RNU6-4P-201ENST00000384205 107 ntBASIC1.59□□□□□ -2.15
VPS13CQ709C8 RNU6-5P-201ENST00000384238 107 ntBASIC1.59□□□□□ -2.15
VPS13CQ709C8 RNU6-3P-201ENST00000384314 107 ntBASIC1.59□□□□□ -2.15
VPS13CQ709C8 RNU6-2-201ENST00000384627 107 ntBASIC1.59□□□□□ -2.15
VPS13CQ709C8 RNU6-9-201ENST00000384776 107 ntBASIC1.59□□□□□ -2.15
VPS13CQ709C8 RNU6-33P-201ENST00000384793 107 ntBASIC1.59□□□□□ -2.15
VPS13CQ709C8 RPL7P37-201ENST00000425095 738 ntBASIC1.59□□□□□ -2.15
VPS13CQ709C8 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC1.59□□□□□ -2.15
VPS13CQ709C8 RPS7P5-201ENST00000441482 581 ntBASIC1.59□□□□□ -2.15
VPS13CQ709C8 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC1.59□□□□□ -2.15
VPS13CQ709C8 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC1.59□□□□□ -2.15
VPS13CQ709C8 MIR5089-201ENST00000580047 84 ntBASIC1.59□□□□□ -2.15
VPS13CQ709C8 RNU6-6P-201ENST00000606623 107 ntBASIC1.59□□□□□ -2.15
VPS13CQ709C8 UBE2Q2P2-203ENST00000613592 761 ntBASIC1.59□□□□□ -2.15
VPS13CQ709C8 USF3-202ENST00000478658 8461 ntAPPRIS P2 TSL 5 BASIC1.59□□□□□ -2.15
VPS13CQ709C8 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC1.59□□□□□ -2.16
VPS13CQ709C8 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC1.59□□□□□ -2.16
VPS13CQ709C8 ANKRD30A-201ENST00000361713 4405 ntAPPRIS P2 TSL 5 BASIC1.59□□□□□ -2.16
VPS13CQ709C8 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC1.59□□□□□ -2.16
VPS13CQ709C8 RNU1-51P-201ENST00000365345 176 ntBASIC1.59□□□□□ -2.16
VPS13CQ709C8 DEFA7P-201ENST00000382676 285 ntBASIC1.59□□□□□ -2.16
VPS13CQ709C8 MUPP-201ENST00000438111 566 ntBASIC1.59□□□□□ -2.16
VPS13CQ709C8 RNU7-170P-201ENST00000459303 61 ntBASIC1.59□□□□□ -2.16
VPS13CQ709C8 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC1.59□□□□□ -2.16
VPS13CQ709C8 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC1.59□□□□□ -2.16
VPS13CQ709C8 RAB3IP-214ENST00000550847 670 ntTSL 3 BASIC1.59□□□□□ -2.16
VPS13CQ709C8 IQCM-206ENST00000636793 1900 ntAPPRIS P5 TSL 5 BASIC1.59□□□□□ -2.16
VPS13CQ709C8 AL606537.1-201ENST00000607258 2011 ntBASIC1.58□□□□□ -2.16
VPS13CQ709C8 Y_RNA.191-201ENST00000363972 113 ntBASIC1.58□□□□□ -2.16
VPS13CQ709C8 SNORD114-22-201ENST00000365423 72 ntBASIC1.58□□□□□ -2.16
VPS13CQ709C8 AL590762.3-201ENST00000436372 640 ntBASIC1.58□□□□□ -2.16
VPS13CQ709C8 AL591719.1-201ENST00000444669 744 ntBASIC1.58□□□□□ -2.16
VPS13CQ709C8 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC1.58□□□□□ -2.16
VPS13CQ709C8 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC1.58□□□□□ -2.16
VPS13CQ709C8 AL354943.1-201ENST00000572103 781 ntBASIC1.58□□□□□ -2.16
VPS13CQ709C8 Y_RNA.783-201ENST00000613546 102 ntBASIC1.58□□□□□ -2.16
VPS13CQ709C8 AL353748.2-201ENST00000622148 471 ntBASIC1.58□□□□□ -2.16
VPS13CQ709C8 AC084768.2-201ENST00000622736 221 ntBASIC1.58□□□□□ -2.16
VPS13CQ709C8 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.58□□□□□ -2.16
VPS13CQ709C8 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC1.58□□□□□ -2.16
VPS13CQ709C8 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.58□□□□□ -2.16
VPS13CQ709C8 NPY5R-202ENST00000506953 1418 ntAPPRIS P1 BASIC1.58□□□□□ -2.16
VPS13CQ709C8 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC1.58□□□□□ -2.16
VPS13CQ709C8 AF127577.6-201ENST00000623352 2191 ntBASIC1.58□□□□□ -2.16
VPS13CQ709C8 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC1.58□□□□□ -2.16
VPS13CQ709C8 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC1.58□□□□□ -2.16
VPS13CQ709C8 AC135279.1-201ENST00000543493 504 ntBASIC1.58□□□□□ -2.16
VPS13CQ709C8 LINC02463-201ENST00000546414 497 ntTSL 3 BASIC1.58□□□□□ -2.16
VPS13CQ709C8 AC114546.1-201ENST00000560140 473 ntTSL 3 BASIC1.58□□□□□ -2.16
VPS13CQ709C8 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC1.58□□□□□ -2.16
VPS13CQ709C8 AC006378.2-201ENST00000623178 2476 ntBASIC1.58□□□□□ -2.16
VPS13CQ709C8 FTX-214ENST00000638437 12267 ntTSL 5 BASIC1.58□□□□□ -2.16
VPS13CQ709C8 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC1.58□□□□□ -2.16
VPS13CQ709C8 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC1.58□□□□□ -2.16
VPS13CQ709C8 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC1.58□□□□□ -2.16
VPS13CQ709C8 PSMA3P-201ENST00000555485 635 ntBASIC1.58□□□□□ -2.16
VPS13CQ709C8 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC1.57□□□□□ -2.16
VPS13CQ709C8 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.57□□□□□ -2.16
VPS13CQ709C8 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.57□□□□□ -2.16
VPS13CQ709C8 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC1.57□□□□□ -2.16
VPS13CQ709C8 AC027124.2-201ENST00000428249 105 ntBASIC1.57□□□□□ -2.16
VPS13CQ709C8 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC1.57□□□□□ -2.16
VPS13CQ709C8 RNA5SP102-201ENST00000516865 106 ntBASIC1.57□□□□□ -2.16
VPS13CQ709C8 AP003170.4-201ENST00000543486 586 ntTSL 3 BASIC1.57□□□□□ -2.16
VPS13CQ709C8 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC1.57□□□□□ -2.16
VPS13CQ709C8 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC1.57□□□□□ -2.16
VPS13CQ709C8 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC1.57□□□□□ -2.16
VPS13CQ709C8 UBE2L2-201ENST00000254302 429 ntBASIC1.57□□□□□ -2.16
VPS13CQ709C8 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC1.57□□□□□ -2.16
VPS13CQ709C8 ERHP2-201ENST00000402323 299 ntBASIC1.57□□□□□ -2.16
VPS13CQ709C8 MIR1294-201ENST00000408503 142 ntBASIC1.57□□□□□ -2.16
VPS13CQ709C8 PPP1R2P5-201ENST00000457256 603 ntBASIC1.57□□□□□ -2.16
VPS13CQ709C8 AC079362.1-201ENST00000546865 525 ntTSL 3 BASIC1.57□□□□□ -2.16
VPS13CQ709C8 CDC27P2-201ENST00000425026 1922 ntBASIC1.57□□□□□ -2.16
VPS13CQ709C8 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC1.57□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 115.7 ms