Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AL589740.1-205ENST00000635561 565 ntTSL 5 BASIC1.99□□□□□ -2.09
CHD9Q3L8U1 RBMS3-AS3-202ENST00000635847 738 ntTSL 5 BASIC1.99□□□□□ -2.09
CHD9Q3L8U1 CDC27P2-201ENST00000425026 1922 ntBASIC1.99□□□□□ -2.09
CHD9Q3L8U1 AC103988.1-201ENST00000566382 2177 ntBASIC1.98□□□□□ -2.09
CHD9Q3L8U1 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
CHD9Q3L8U1 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC1.98□□□□□ -2.09
CHD9Q3L8U1 ARL4AP2-201ENST00000507378 601 ntBASIC1.98□□□□□ -2.09
CHD9Q3L8U1 MYOCOS-203ENST00000637303 564 ntAPPRIS P5 TSL 5 BASIC1.98□□□□□ -2.09
CHD9Q3L8U1 AC073869.7-201ENST00000640874 297 ntBASIC1.98□□□□□ -2.09
CHD9Q3L8U1 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC1.98□□□□□ -2.09
CHD9Q3L8U1 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC1.98□□□□□ -2.09
CHD9Q3L8U1 DCAF13P1-201ENST00000495256 1330 ntBASIC1.98□□□□□ -2.09
CHD9Q3L8U1 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC1.98□□□□□ -2.09
CHD9Q3L8U1 AC093311.1-201ENST00000506586 2021 ntBASIC1.98□□□□□ -2.09
CHD9Q3L8U1 RNU1-57P-201ENST00000384491 166 ntBASIC1.98□□□□□ -2.09
CHD9Q3L8U1 AC097512.1-203ENST00000506425 957 ntTSL 3 BASIC1.98□□□□□ -2.09
CHD9Q3L8U1 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.98□□□□□ -2.09
CHD9Q3L8U1 LINC02399-201ENST00000547094 400 ntTSL 2 BASIC1.98□□□□□ -2.09
CHD9Q3L8U1 VPS29-210ENST00000552130 1057 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
CHD9Q3L8U1 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC1.98□□□□□ -2.09
CHD9Q3L8U1 AC027458.1-201ENST00000563639 613 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
CHD9Q3L8U1 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
CHD9Q3L8U1 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC1.98□□□□□ -2.09
CHD9Q3L8U1 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC1.97□□□□□ -2.09
CHD9Q3L8U1 OR8K1-201ENST00000279783 1087 ntAPPRIS P1 BASIC1.97□□□□□ -2.09
CHD9Q3L8U1 SNORD114-22-201ENST00000365423 72 ntBASIC1.97□□□□□ -2.09
CHD9Q3L8U1 AL078590.2-202ENST00000422736 568 ntTSL 3 BASIC1.97□□□□□ -2.09
CHD9Q3L8U1 USP9YP8-201ENST00000441913 500 ntBASIC1.97□□□□□ -2.09
CHD9Q3L8U1 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC1.97□□□□□ -2.09
CHD9Q3L8U1 HMMR-AS1-202ENST00000521666 800 ntTSL 2 BASIC1.97□□□□□ -2.09
CHD9Q3L8U1 IGHV3-76-201ENST00000522465 295 ntBASIC1.97□□□□□ -2.09
CHD9Q3L8U1 OR10D4P-201ENST00000525892 951 ntBASIC1.97□□□□□ -2.09
CHD9Q3L8U1 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC1.97□□□□□ -2.09
CHD9Q3L8U1 LAMTOR5-AS1-203ENST00000585330 463 ntTSL 2 BASIC1.97□□□□□ -2.09
CHD9Q3L8U1 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC1.97□□□□□ -2.09
CHD9Q3L8U1 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC1.97□□□□□ -2.09
CHD9Q3L8U1 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC1.97□□□□□ -2.09
CHD9Q3L8U1 RNU6-356P-201ENST00000384140 107 ntBASIC1.97□□□□□ -2.09
CHD9Q3L8U1 AC093392.2-201ENST00000450682 337 ntBASIC1.97□□□□□ -2.09
CHD9Q3L8U1 AL645939.1-201ENST00000453429 797 ntBASIC1.97□□□□□ -2.09
CHD9Q3L8U1 AC068781.1-201ENST00000488231 618 ntBASIC1.97□□□□□ -2.09
CHD9Q3L8U1 PDCL2P2-201ENST00000533651 189 ntBASIC1.97□□□□□ -2.09
CHD9Q3L8U1 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC1.97□□□□□ -2.09
CHD9Q3L8U1 AC110741.2-201ENST00000605278 268 ntBASIC1.97□□□□□ -2.09
CHD9Q3L8U1 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC1.97□□□□□ -2.09
CHD9Q3L8U1 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC1.96□□□□□ -2.09
CHD9Q3L8U1 DEFA7P-201ENST00000382676 285 ntBASIC1.96□□□□□ -2.09
CHD9Q3L8U1 AC104564.1-201ENST00000493028 407 ntBASIC1.96□□□□□ -2.09
CHD9Q3L8U1 AC112496.1-201ENST00000497961 562 ntTSL 5 BASIC1.96□□□□□ -2.09
CHD9Q3L8U1 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC1.96□□□□□ -2.09
CHD9Q3L8U1 IGHVIII-5-1-201ENST00000523059 99 ntBASIC1.96□□□□□ -2.09
CHD9Q3L8U1 HPVC1-201ENST00000629899 1198 ntBASIC1.96□□□□□ -2.09
CHD9Q3L8U1 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC1.96□□□□□ -2.1
CHD9Q3L8U1 RNU4-74P-201ENST00000411280 161 ntBASIC1.96□□□□□ -2.1
CHD9Q3L8U1 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC1.96□□□□□ -2.1
CHD9Q3L8U1 AC034244.1-201ENST00000507687 207 ntBASIC1.96□□□□□ -2.1
CHD9Q3L8U1 AP003354.2-201ENST00000517983 563 ntTSL 4 BASIC1.96□□□□□ -2.1
CHD9Q3L8U1 OR4P1P-201ENST00000530808 1136 ntBASIC1.96□□□□□ -2.1
CHD9Q3L8U1 AC009101.2-201ENST00000564293 456 ntTSL 3 BASIC1.96□□□□□ -2.1
CHD9Q3L8U1 MIR3199-1-201ENST00000582434 88 ntBASIC1.96□□□□□ -2.1
CHD9Q3L8U1 AL008729.2-201ENST00000606393 473 ntBASIC1.96□□□□□ -2.1
CHD9Q3L8U1 AC241377.1-201ENST00000619797 406 ntBASIC1.96□□□□□ -2.1
CHD9Q3L8U1 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
CHD9Q3L8U1 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.96□□□□□ -2.1
CHD9Q3L8U1 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.96□□□□□ -2.1
CHD9Q3L8U1 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC1.96□□□□□ -2.1
CHD9Q3L8U1 Y_RNA.224-201ENST00000364308 111 ntBASIC1.96□□□□□ -2.1
CHD9Q3L8U1 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC1.96□□□□□ -2.1
CHD9Q3L8U1 RNU2-20P-201ENST00000410425 191 ntBASIC1.96□□□□□ -2.1
CHD9Q3L8U1 MUPP-201ENST00000438111 566 ntBASIC1.96□□□□□ -2.1
CHD9Q3L8U1 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC1.96□□□□□ -2.1
CHD9Q3L8U1 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC1.96□□□□□ -2.1
CHD9Q3L8U1 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
CHD9Q3L8U1 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC1.95□□□□□ -2.1
CHD9Q3L8U1 TRIM60P8Y-201ENST00000436338 762 ntBASIC1.95□□□□□ -2.1
CHD9Q3L8U1 AL590867.3-201ENST00000436953 438 ntTSL 3 BASIC1.95□□□□□ -2.1
CHD9Q3L8U1 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC1.95□□□□□ -2.1
CHD9Q3L8U1 RPL21P18-201ENST00000469899 480 ntBASIC1.95□□□□□ -2.1
CHD9Q3L8U1 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC1.95□□□□□ -2.1
CHD9Q3L8U1 AC114546.1-201ENST00000560140 473 ntTSL 3 BASIC1.95□□□□□ -2.1
CHD9Q3L8U1 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
CHD9Q3L8U1 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
CHD9Q3L8U1 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC1.95□□□□□ -2.1
CHD9Q3L8U1 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC1.95□□□□□ -2.1
CHD9Q3L8U1 AL590084.1-201ENST00000407885 387 ntBASIC1.95□□□□□ -2.1
CHD9Q3L8U1 HMGB1P27-201ENST00000431429 603 ntBASIC1.95□□□□□ -2.1
CHD9Q3L8U1 AC009238.1-201ENST00000442165 424 ntBASIC1.95□□□□□ -2.1
CHD9Q3L8U1 AC009237.6-201ENST00000446969 424 ntBASIC1.95□□□□□ -2.1
CHD9Q3L8U1 AL121594.1-201ENST00000475906 575 ntBASIC1.95□□□□□ -2.1
CHD9Q3L8U1 AC023632.5-201ENST00000521010 491 ntTSL 3 BASIC1.95□□□□□ -2.1
CHD9Q3L8U1 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
CHD9Q3L8U1 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
CHD9Q3L8U1 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
CHD9Q3L8U1 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
CHD9Q3L8U1 HMGB1P10-201ENST00000395823 563 ntBASIC1.94□□□□□ -2.1
CHD9Q3L8U1 AL512598.1-201ENST00000610158 273 ntBASIC1.94□□□□□ -2.1
CHD9Q3L8U1 AC010678.1-201ENST00000614118 713 ntBASIC1.94□□□□□ -2.1
CHD9Q3L8U1 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC1.94□□□□□ -2.1
CHD9Q3L8U1 AL445213.1-201ENST00000412589 747 ntBASIC1.94□□□□□ -2.1
CHD9Q3L8U1 AIMP1P1-201ENST00000418670 937 ntBASIC1.94□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 82.9 ms