Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AL024474.1-201ENST00000404655 591 ntBASIC4.49□□□□□ -1.69
MSX2P35548 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC4.49□□□□□ -1.69
MSX2P35548 AC009161.1-201ENST00000417306 376 ntBASIC4.49□□□□□ -1.69
MSX2P35548 RPS15AP12-201ENST00000419498 388 ntBASIC4.49□□□□□ -1.69
MSX2P35548 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC4.49□□□□□ -1.69
MSX2P35548 AC234779.1-201ENST00000425910 285 ntBASIC4.49□□□□□ -1.69
MSX2P35548 AC096632.1-201ENST00000427395 310 ntBASIC4.49□□□□□ -1.69
MSX2P35548 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC4.49□□□□□ -1.69
MSX2P35548 HMGB1P18-201ENST00000438801 619 ntBASIC4.49□□□□□ -1.69
MSX2P35548 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC4.49□□□□□ -1.69
MSX2P35548 AL137076.1-201ENST00000441046 551 ntTSL 2 BASIC4.49□□□□□ -1.69
MSX2P35548 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC4.49□□□□□ -1.69
MSX2P35548 AC079781.2-201ENST00000446424 169 ntBASIC4.49□□□□□ -1.69
MSX2P35548 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC4.49□□□□□ -1.69
MSX2P35548 RNU6-329P-201ENST00000459618 107 ntBASIC4.49□□□□□ -1.69
MSX2P35548 RPL23AP56-201ENST00000460778 453 ntBASIC4.49□□□□□ -1.69
MSX2P35548 RN7SL610P-201ENST00000463845 291 ntBASIC4.49□□□□□ -1.69
MSX2P35548 MRPS17P3-201ENST00000465453 385 ntBASIC4.49□□□□□ -1.69
MSX2P35548 RPS20P21-201ENST00000466859 343 ntBASIC4.49□□□□□ -1.69
MSX2P35548 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC4.49□□□□□ -1.69
MSX2P35548 AC093267.1-201ENST00000489176 961 ntBASIC4.49□□□□□ -1.69
MSX2P35548 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC4.49□□□□□ -1.69
MSX2P35548 MRPS33P2-201ENST00000507850 322 ntBASIC4.49□□□□□ -1.69
MSX2P35548 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
MSX2P35548 TMEM248P1-201ENST00000510579 951 ntBASIC4.49□□□□□ -1.69
MSX2P35548 AC091435.2-201ENST00000514586 565 ntTSL 4 BASIC4.49□□□□□ -1.69
MSX2P35548 RNU4-49P-201ENST00000516080 140 ntBASIC4.49□□□□□ -1.69
MSX2P35548 RNU6-410P-201ENST00000517006 107 ntBASIC4.49□□□□□ -1.69
MSX2P35548 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC4.49□□□□□ -1.69
MSX2P35548 AC025263.2-201ENST00000550437 548 ntAPPRIS P1 TSL 5 BASIC4.49□□□□□ -1.69
MSX2P35548 AL161713.1-201ENST00000555538 145 ntBASIC4.49□□□□□ -1.69
MSX2P35548 AC093249.1-201ENST00000567049 203 ntBASIC4.49□□□□□ -1.69
MSX2P35548 TVP23CP2-201ENST00000571473 623 ntBASIC4.49□□□□□ -1.69
MSX2P35548 HNRNPCP4-201ENST00000571636 900 ntBASIC4.49□□□□□ -1.69
MSX2P35548 MIR3146-201ENST00000580367 79 ntBASIC4.49□□□□□ -1.69
MSX2P35548 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC4.49□□□□□ -1.69
MSX2P35548 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC4.49□□□□□ -1.69
MSX2P35548 UBE2L4-201ENST00000587688 464 ntBASIC4.49□□□□□ -1.69
MSX2P35548 AC004853.1-201ENST00000604902 698 ntBASIC4.49□□□□□ -1.69
MSX2P35548 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC4.49□□□□□ -1.69
MSX2P35548 MIR6730-201ENST00000622213 67 ntBASIC4.49□□□□□ -1.69
MSX2P35548 AC099494.2-201ENST00000623371 978 ntBASIC4.49□□□□□ -1.69
MSX2P35548 AC079597.1-201ENST00000624306 508 ntBASIC4.49□□□□□ -1.69
MSX2P35548 AC055839.1-201ENST00000634467 498 ntBASIC4.49□□□□□ -1.69
MSX2P35548 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
MSX2P35548 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC4.49□□□□□ -1.69
MSX2P35548 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
MSX2P35548 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
MSX2P35548 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
MSX2P35548 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC4.48□□□□□ -1.69
MSX2P35548 EOGT-209ENST00000540955 1332 ntTSL 2 BASIC4.48□□□□□ -1.69
MSX2P35548 AL136164.3-201ENST00000624429 3978 ntBASIC4.48□□□□□ -1.69
MSX2P35548 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC4.48□□□□□ -1.69
MSX2P35548 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.48□□□□□ -1.69
MSX2P35548 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
MSX2P35548 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
MSX2P35548 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
MSX2P35548 RNU6-28P-201ENST00000362378 107 ntBASIC4.48□□□□□ -1.69
MSX2P35548 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC4.48□□□□□ -1.69
MSX2P35548 RNU6-606P-201ENST00000384721 111 ntBASIC4.48□□□□□ -1.69
MSX2P35548 SNORA75.4-201ENST00000391278 119 ntBASIC4.48□□□□□ -1.69
MSX2P35548 C2orf73-203ENST00000405749 576 ntTSL 4 BASIC4.48□□□□□ -1.69
MSX2P35548 ZSCAN12P1-201ENST00000406489 419 ntBASIC4.48□□□□□ -1.69
MSX2P35548 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC4.48□□□□□ -1.69
MSX2P35548 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC4.48□□□□□ -1.69
MSX2P35548 RPS26P56-201ENST00000444468 240 ntBASIC4.48□□□□□ -1.69
MSX2P35548 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC4.48□□□□□ -1.69
MSX2P35548 SNORD19B-201ENST00000459623 84 ntBASIC4.48□□□□□ -1.69
MSX2P35548 AC078785.3-201ENST00000476607 425 ntBASIC4.48□□□□□ -1.69
MSX2P35548 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC4.48□□□□□ -1.69
MSX2P35548 AL163973.1-201ENST00000484753 577 ntBASIC4.48□□□□□ -1.69
MSX2P35548 RPL23AP72-201ENST00000492447 435 ntBASIC4.48□□□□□ -1.69
MSX2P35548 RN7SL244P-201ENST00000493405 297 ntBASIC4.48□□□□□ -1.69
MSX2P35548 AK3P4-201ENST00000504283 583 ntBASIC4.48□□□□□ -1.69
MSX2P35548 HSPD1P15-201ENST00000505573 1122 ntBASIC4.48□□□□□ -1.69
MSX2P35548 COX6B1P5-201ENST00000509843 249 ntBASIC4.48□□□□□ -1.69
MSX2P35548 RNA5SP446-201ENST00000515955 82 ntBASIC4.48□□□□□ -1.69
MSX2P35548 RNA5SP34-201ENST00000516887 130 ntBASIC4.48□□□□□ -1.69
MSX2P35548 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
MSX2P35548 AC124068.1-201ENST00000563131 678 ntBASIC4.48□□□□□ -1.69
MSX2P35548 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC4.48□□□□□ -1.69
MSX2P35548 AC005668.1-201ENST00000571142 476 ntBASIC4.48□□□□□ -1.69
MSX2P35548 AC007151.1-201ENST00000572774 483 ntBASIC4.48□□□□□ -1.69
MSX2P35548 MIR1269B-201ENST00000580405 75 ntBASIC4.48□□□□□ -1.69
MSX2P35548 AC005324.5-201ENST00000584540 571 ntTSL 5 BASIC4.48□□□□□ -1.69
MSX2P35548 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC4.48□□□□□ -1.69
MSX2P35548 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC4.48□□□□□ -1.69
MSX2P35548 AL121932.1-201ENST00000605542 214 ntBASIC4.48□□□□□ -1.69
MSX2P35548 AC104237.2-201ENST00000612456 443 ntBASIC4.48□□□□□ -1.69
MSX2P35548 AL627230.1-201ENST00000613077 211 ntBASIC4.48□□□□□ -1.69
MSX2P35548 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC4.48□□□□□ -1.69
MSX2P35548 AL591926.8-201ENST00000616876 211 ntBASIC4.48□□□□□ -1.69
MSX2P35548 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC4.48□□□□□ -1.69
MSX2P35548 TEX41-265ENST00000627785 704 ntTSL 5 BASIC4.48□□□□□ -1.69
MSX2P35548 CYP3A51P-201ENST00000633513 256 ntBASIC4.48□□□□□ -1.69
MSX2P35548 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC4.48□□□□□ -1.69
MSX2P35548 ZNF736P3Y-201ENST00000428264 1465 ntBASIC4.48□□□□□ -1.69
MSX2P35548 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
MSX2P35548 OR2L13-202ENST00000641714 1948 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
MSX2P35548 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC4.48□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 77.1 ms