Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC4.14□□□□□ -1.75
HOXC9P31274 RPS6P15-201ENST00000431996 751 ntBASIC4.14□□□□□ -1.75
HOXC9P31274 HMGB3P11-201ENST00000440127 604 ntBASIC4.14□□□□□ -1.75
HOXC9P31274 AC104781.1-201ENST00000449838 397 ntTSL 3 BASIC4.14□□□□□ -1.75
HOXC9P31274 ATG12P2-201ENST00000456830 416 ntBASIC4.14□□□□□ -1.75
HOXC9P31274 AC092924.1-201ENST00000496084 487 ntTSL 4 BASIC4.14□□□□□ -1.75
HOXC9P31274 AC104090.1-201ENST00000506341 1171 ntBASIC4.14□□□□□ -1.75
HOXC9P31274 AC027309.2-201ENST00000520566 192 ntBASIC4.14□□□□□ -1.75
HOXC9P31274 NDUFB9P3-201ENST00000521269 501 ntBASIC4.14□□□□□ -1.75
HOXC9P31274 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC4.14□□□□□ -1.75
HOXC9P31274 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC4.14□□□□□ -1.75
HOXC9P31274 AP000790.1-201ENST00000528891 737 ntBASIC4.14□□□□□ -1.75
HOXC9P31274 AC090502.2-201ENST00000549267 280 ntBASIC4.14□□□□□ -1.75
HOXC9P31274 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC4.14□□□□□ -1.75
HOXC9P31274 AL358333.1-201ENST00000555115 467 ntTSL 3 BASIC4.14□□□□□ -1.75
HOXC9P31274 AL356022.1-201ENST00000557465 483 ntTSL 5 BASIC4.14□□□□□ -1.75
HOXC9P31274 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC4.14□□□□□ -1.75
HOXC9P31274 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC4.14□□□□□ -1.75
HOXC9P31274 MTCYBP28-201ENST00000566728 1132 ntBASIC4.14□□□□□ -1.75
HOXC9P31274 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC4.14□□□□□ -1.75
HOXC9P31274 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC4.14□□□□□ -1.75
HOXC9P31274 AL133507.1-201ENST00000605269 557 ntBASIC4.14□□□□□ -1.75
HOXC9P31274 AC091946.2-201ENST00000606105 291 ntBASIC4.14□□□□□ -1.75
HOXC9P31274 AL139418.1-201ENST00000613613 177 ntBASIC4.14□□□□□ -1.75
HOXC9P31274 Z99129.2-201ENST00000619967 314 ntBASIC4.14□□□□□ -1.75
HOXC9P31274 AC022079.1-201ENST00000621546 602 ntBASIC4.14□□□□□ -1.75
HOXC9P31274 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC4.14□□□□□ -1.75
HOXC9P31274 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC4.14□□□□□ -1.75
HOXC9P31274 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC4.14□□□□□ -1.75
HOXC9P31274 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC4.14□□□□□ -1.75
HOXC9P31274 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC4.13□□□□□ -1.75
HOXC9P31274 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
HOXC9P31274 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC4.13□□□□□ -1.75
HOXC9P31274 CDR1-202ENST00000625883 1485 ntBASIC4.13□□□□□ -1.75
HOXC9P31274 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC4.13□□□□□ -1.75
HOXC9P31274 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC4.13□□□□□ -1.75
HOXC9P31274 RNU6-251P-201ENST00000363235 104 ntBASIC4.13□□□□□ -1.75
HOXC9P31274 Y_RNA.169-201ENST00000363745 96 ntBASIC4.13□□□□□ -1.75
HOXC9P31274 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC4.13□□□□□ -1.75
HOXC9P31274 RNU2-21P-201ENST00000410368 188 ntBASIC4.13□□□□□ -1.75
HOXC9P31274 RAP1BP1-201ENST00000412709 553 ntBASIC4.13□□□□□ -1.75
HOXC9P31274 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC4.13□□□□□ -1.75
HOXC9P31274 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC4.13□□□□□ -1.75
HOXC9P31274 AC011233.1-201ENST00000422812 283 ntBASIC4.13□□□□□ -1.75
HOXC9P31274 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC4.13□□□□□ -1.75
HOXC9P31274 RPL31P54-201ENST00000429803 370 ntBASIC4.13□□□□□ -1.75
HOXC9P31274 B3GNT2P1-201ENST00000434960 952 ntBASIC4.13□□□□□ -1.75
HOXC9P31274 SETP5-201ENST00000437270 562 ntBASIC4.13□□□□□ -1.75
HOXC9P31274 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC4.13□□□□□ -1.75
HOXC9P31274 LINC00363-201ENST00000443228 210 ntTSL 5 BASIC4.13□□□□□ -1.75
HOXC9P31274 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC4.13□□□□□ -1.75
HOXC9P31274 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC4.13□□□□□ -1.75
HOXC9P31274 HCG17-214ENST00000453558 732 ntTSL 5 BASIC4.13□□□□□ -1.75
HOXC9P31274 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC4.13□□□□□ -1.75
HOXC9P31274 AC010486.2-201ENST00000505572 483 ntBASIC4.13□□□□□ -1.75
HOXC9P31274 RNY4P37-201ENST00000516225 96 ntBASIC4.13□□□□□ -1.75
HOXC9P31274 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC4.13□□□□□ -1.75
HOXC9P31274 ARL2BPP5-201ENST00000523141 481 ntBASIC4.13□□□□□ -1.75
HOXC9P31274 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC4.13□□□□□ -1.75
HOXC9P31274 AC009712.1-201ENST00000564938 316 ntBASIC4.13□□□□□ -1.75
HOXC9P31274 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC4.13□□□□□ -1.75
HOXC9P31274 VN1R82P-201ENST00000601481 356 ntBASIC4.13□□□□□ -1.75
HOXC9P31274 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC4.13□□□□□ -1.75
HOXC9P31274 AC092184.1-201ENST00000625042 715 ntBASIC4.13□□□□□ -1.75
HOXC9P31274 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC4.13□□□□□ -1.75
HOXC9P31274 CU459211.1-201ENST00000635667 749 ntBASIC4.13□□□□□ -1.75
HOXC9P31274 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
HOXC9P31274 AC090229.1-201ENST00000590983 1609 ntBASIC4.13□□□□□ -1.75
HOXC9P31274 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC4.13□□□□□ -1.75
HOXC9P31274 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC4.13□□□□□ -1.75
HOXC9P31274 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC4.12□□□□□ -1.75
HOXC9P31274 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
HOXC9P31274 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC4.12□□□□□ -1.75
HOXC9P31274 SNORA5B-201ENST00000363786 132 ntBASIC4.12□□□□□ -1.75
HOXC9P31274 RNY3P9-201ENST00000384727 106 ntBASIC4.12□□□□□ -1.75
HOXC9P31274 AC069218.2-201ENST00000411665 344 ntBASIC4.12□□□□□ -1.75
HOXC9P31274 EEF1A1P41-201ENST00000414667 207 ntBASIC4.12□□□□□ -1.75
HOXC9P31274 AC107081.1-201ENST00000414975 361 ntBASIC4.12□□□□□ -1.75
HOXC9P31274 ENOX1-AS2-201ENST00000434273 609 ntTSL 3 BASIC4.12□□□□□ -1.75
HOXC9P31274 RPS26P56-201ENST00000444468 240 ntBASIC4.12□□□□□ -1.75
HOXC9P31274 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC4.12□□□□□ -1.75
HOXC9P31274 AC010301.1-201ENST00000473936 355 ntBASIC4.12□□□□□ -1.75
HOXC9P31274 AC068724.1-201ENST00000487100 792 ntBASIC4.12□□□□□ -1.75
HOXC9P31274 NAA50-206ENST00000493454 964 ntTSL 2 BASIC4.12□□□□□ -1.75
HOXC9P31274 SNX5P1-201ENST00000505757 1041 ntBASIC4.12□□□□□ -1.75
HOXC9P31274 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC4.12□□□□□ -1.75
HOXC9P31274 SCARNA20.6-201ENST00000517251 106 ntBASIC4.12□□□□□ -1.75
HOXC9P31274 AC108515.1-201ENST00000517407 525 ntTSL 3 BASIC4.12□□□□□ -1.75
HOXC9P31274 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC4.12□□□□□ -1.75
HOXC9P31274 AP001636.2-201ENST00000525517 696 ntBASIC4.12□□□□□ -1.75
HOXC9P31274 AL161713.1-201ENST00000555538 145 ntBASIC4.12□□□□□ -1.75
HOXC9P31274 AC006023.1-201ENST00000603944 259 ntBASIC4.12□□□□□ -1.75
HOXC9P31274 AC010680.3-201ENST00000604215 520 ntBASIC4.12□□□□□ -1.75
HOXC9P31274 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC4.12□□□□□ -1.75
HOXC9P31274 AC067852.7-201ENST00000623270 535 ntBASIC4.12□□□□□ -1.75
HOXC9P31274 AC068057.2-201ENST00000624047 895 ntBASIC4.12□□□□□ -1.75
HOXC9P31274 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
HOXC9P31274 AL121759.2-201ENST00000636173 570 ntTSL 4 BASIC4.12□□□□□ -1.75
HOXC9P31274 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC4.12□□□□□ -1.75
HOXC9P31274 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 101.4 ms